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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKQI] human gut metagenome; human gut
HIT:
79 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182865097
OKQI01000291
[OKQI] human gut metagenome; human gut
63
138
+
Trp
CCA
[ENA]
¢þ
>WENV182865145
OKQI01004414
[OKQI] human gut metagenome; human gut
63
147
+
Tyr
GTA
[ENA]
¢þ
>WENV182865114
OKQI01000606
[OKQI] human gut metagenome; human gut
76
4
-
Phe
GAA
[ENA]
¢þ
>WENV182865088
OKQI01000110
[OKQI] human gut metagenome; human gut
77
1
-
Met
CAT
[ENA]
¢þ
>WENV182865070
OKQI01000002
[OKQI] human gut metagenome; human gut
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV182865131
OKQI01001733
[OKQI] human gut metagenome; human gut
88
-1
-
Ser
TGA
[ENA]
¢þ
>WENV182865084
OKQI01000096
[OKQI] human gut metagenome; human gut
96
172
+
Asp
GTC
[ENA]
¢þ
>WENV182865137
OKQI01002027
[OKQI] human gut metagenome; human gut
124
51
-
Cys
GCA
[ENA]
¢þ
>WENV182865143
OKQI01003387
[OKQI] human gut metagenome; human gut
152
238
+
Leu
TAA
[ENA]
¢þ
>WENV182865113
OKQI01000606
[OKQI] human gut metagenome; human gut
197
122
-
Asp
GTC
[ENA]
¢þ
>WENV182865146
OKQI01004414
[OKQI] human gut metagenome; human gut
264
338
+
Gly
TCC
[ENA]
¢þ
>WENV182865112
OKQI01000606
[OKQI] human gut metagenome; human gut
281
207
-
Val
TAC
[ENA]
¢þ
>WENV182865100
OKQI01000350
[OKQI] human gut metagenome; human gut
285
361
+
Arg
TCT
[ENA]
¢þ
>WENV182865147
OKQI01004414
[OKQI] human gut metagenome; human gut
345
420
+
Thr
GGT
[ENA]
¢þ
>WENV182865101
OKQI01000350
[OKQI] human gut metagenome; human gut
413
488
+
His
GTG
[ENA]
¢þ
>WENV182865148
OKQI01006465
[OKQI] human gut metagenome; human gut
415
501
+
Leu
GAG
[ENA]
¢þ
>WENV182865139
OKQI01002046
[OKQI] human gut metagenome; human gut
500
576
+
Val
GAC
[ENA]
¢þ
>WENV182865136
OKQI01002023
[OKQI] human gut metagenome; human gut
502
417
-
Leu
CAG
[ENA]
¢þ
>WENV182865098
OKQI01000302
[OKQI] human gut metagenome; human gut
513
588
+
Ile2
CAT
[ENA]
¢þ
>WENV182865140
OKQI01002300
[OKQI] human gut metagenome; human gut
519
593
+
Arg
CCT
[ENA]
¢þ
>WENV182865102
OKQI01000350
[OKQI] human gut metagenome; human gut
543
627
+
Leu
TAG
[ENA]
¢þ
>WENV182865135
OKQI01002023
[OKQI] human gut metagenome; human gut
598
523
-
His
GTG
[ENA]
¢þ
>WENV182865144
OKQI01004061
[OKQI] human gut metagenome; human gut
662
737
+
Ile2
CAT
[ENA]
¢þ
>WENV182865134
OKQI01002023
[OKQI] human gut metagenome; human gut
733
657
-
Arg
CCG
[ENA]
¢þ
>WENV182865132
OKQI01001855
[OKQI] human gut metagenome; human gut
740
814
+
Asn
GTT
[ENA]
¢þ
>WENV182865133
OKQI01001871
[OKQI] human gut metagenome; human gut
765
841
+
Asp
GTC
[ENA]
¢þ
>WENV182865122
OKQI01000887
[OKQI] human gut metagenome; human gut
844
768
-
Arg
CCT
[ENA]
¢þ
>WENV182865129
OKQI01001365
[OKQI] human gut metagenome; human gut
893
969
+
Pro
GGG
[ENA]
¢þ
>WENV182865141
OKQI01002455
[OKQI] human gut metagenome; human gut
893
983
+
Ser
GCT
[ENA]
¢þ
>WENV182865142
OKQI01002760
[OKQI] human gut metagenome; human gut
982
1057
+
Asn
GTT
[ENA]
¢þ
>WENV182865107
OKQI01000457
[OKQI] human gut metagenome; human gut
1191
1116
-
Val
TAC
[ENA]
¢þ
>WENV182865138
OKQI01002036
[OKQI] human gut metagenome; human gut
1203
1128
-
Trp
CCA
[ENA]
¢þ
>WENV182865111
OKQI01000585
[OKQI] human gut metagenome; human gut
1307
1218
-
Ser
CGA
[ENA]
¢þ
>WENV182865121
OKQI01000829
[OKQI] human gut metagenome; human gut
1461
1534
+
Gly
CCC
[ENA]
¢þ
>WENV182865130
OKQI01001544
[OKQI] human gut metagenome; human gut
1565
1489
-
Pro
TGG
[ENA]
¢þ
>WENV182865123
OKQI01001181
[OKQI] human gut metagenome; human gut
1589
1673
+
Tyr
GTA
[ENA]
¢þ
>WENV182865124
OKQI01001181
[OKQI] human gut metagenome; human gut
1700
1773
+
Gly
TCC
[ENA]
¢þ
>WENV182865127
OKQI01001264
[OKQI] human gut metagenome; human gut
1712
1637
-
Asn
GTT
[ENA]
¢þ
>WENV182865117
OKQI01000705
[OKQI] human gut metagenome; human gut
1773
1699
-
Gln
TTG
[ENA]
¢þ
>WENV182865128
OKQI01001312
[OKQI] human gut metagenome; human gut
1788
1713
-
Ile2
CAT
[ENA]
¢þ
>WENV182865125
OKQI01001181
[OKQI] human gut metagenome; human gut
1793
1868
+
Thr
GGT
[ENA]
¢þ
>WENV182865103
OKQI01000362
[OKQI] human gut metagenome; human gut
1936
2012
+
Val
GAC
[ENA]
¢þ
>WENV182865126
OKQI01001203
[OKQI] human gut metagenome; human gut
1948
1874
-
Gly
TCC
[ENA]
¢þ
>WENV182865104
OKQI01000362
[OKQI] human gut metagenome; human gut
2017
2093
+
Val
GAC
[ENA]
¢þ
>WENV182865118
OKQI01000717
[OKQI] human gut metagenome; human gut
2056
1970
-
Leu
CAG
[ENA]
¢þ
>WENV182865105
OKQI01000366
[OKQI] human gut metagenome; human gut
2157
2232
+
Thr
TGT
[ENA]
¢þ
>WENV182865120
OKQI01000737
[OKQI] human gut metagenome; human gut
2166
2091
-
Ala
TGC
[ENA]
¢þ
>WENV182865119
OKQI01000737
[OKQI] human gut metagenome; human gut
2271
2195
-
Ile
GAT
[ENA]
¢þ
>WENV182865109
OKQI01000473
[OKQI] human gut metagenome; human gut
2388
2463
+
Lys
TTT
[ENA]
¢þ
>WENV182865108
OKQI01000467
[OKQI] human gut metagenome; human gut
2540
2454
-
Leu
CAA
[ENA]
¢þ
>WENV182865087
OKQI01000109
[OKQI] human gut metagenome; human gut
2629
2553
-
fMet
CAT
[ENA]
¢þ
>WENV182865094
OKQI01000182
[OKQI] human gut metagenome; human gut
2708
2802
+
SeC
TCA
[ENA]
¢þ
>WENV182865086
OKQI01000109
[OKQI] human gut metagenome; human gut
2805
2720
-
Leu
GAG
[ENA]
¢þ
>WENV182865115
OKQI01000642
[OKQI] human gut metagenome; human gut
2841
2765
-
Pro
CGG
[ENA]
¢þ
>WENV182865116
OKQI01000684
[OKQI] human gut metagenome; human gut
3051
3127
+
Ile2
CAT
[ENA]
¢þ
>WENV182865076
OKQI01000021
[OKQI] human gut metagenome; human gut
3282
3356
+
Arg
CCT
[ENA]
¢þ
>WENV182865110
OKQI01000538
[OKQI] human gut metagenome; human gut
3575
3667
+
Ser
GCT
[ENA]
¢þ
>WENV182865106
OKQI01000415
[OKQI] human gut metagenome; human gut
4248
4323
+
Thr
CGT
[ENA]
¢þ
>WENV182865099
OKQI01000317
[OKQI] human gut metagenome; human gut
5877
5802
-
Phe
GAA
[ENA]
¢þ
>WENV182865096
OKQI01000196
[OKQI] human gut metagenome; human gut
7806
7717
-
Ser
CGA
[ENA]
¢þ
>WENV182865075
OKQI01000010
[OKQI] human gut metagenome; human gut
7950
8025
+
Phe
GAA
[ENA]
¢þ
>WENV182865077
OKQI01000054
[OKQI] human gut metagenome; human gut
8165
8089
-
Pro
CGG
[ENA]
¢þ
>WENV182865093
OKQI01000171
[OKQI] human gut metagenome; human gut
8286
8210
-
Arg
CCG
[ENA]
¢þ
>WENV182865085
OKQI01000096
[OKQI] human gut metagenome; human gut
8319
8395
+
Asp
GTC
[ENA]
¢þ
>WENV182865095
OKQI01000196
[OKQI] human gut metagenome; human gut
8798
8873
+
Asn
GTT
[ENA]
¢þ
>WENV182865078
OKQI01000055
[OKQI] human gut metagenome; human gut
9330
9255
-
Thr
CGT
[ENA]
¢þ
>WENV182865091
OKQI01000129
[OKQI] human gut metagenome; human gut
10665
10590
-
Ala
GGC
[ENA]
¢þ
>WENV182865090
OKQI01000129
[OKQI] human gut metagenome; human gut
10780
10705
-
Ala
GGC
[ENA]
¢þ
>WENV182865092
OKQI01000152
[OKQI] human gut metagenome; human gut
11735
11648
-
Ser
TGA
[ENA]
¢þ
>WENV182865089
OKQI01000126
[OKQI] human gut metagenome; human gut
13311
13235
-
Arg
TCT
[ENA]
¢þ
>WENV182865083
OKQI01000078
[OKQI] human gut metagenome; human gut
14042
13956
-
Leu
TAA
[ENA]
¢þ
>WENV182865082
OKQI01000078
[OKQI] human gut metagenome; human gut
14128
14055
-
Cys
GCA
[ENA]
¢þ
>WENV182865081
OKQI01000078
[OKQI] human gut metagenome; human gut
14258
14183
-
Gly
GCC
[ENA]
¢þ
>WENV182865072
OKQI01000006
[OKQI] human gut metagenome; human gut
15714
15630
-
Leu
CAA
[ENA]
¢þ
>WENV182865074
OKQI01000008
[OKQI] human gut metagenome; human gut
16391
16307
-
Tyr
GTA
[ENA]
¢þ
>WENV182865079
OKQI01000059
[OKQI] human gut metagenome; human gut
17292
17378
+
Leu
GAG
[ENA]
¢þ
>WENV182865080
OKQI01000059
[OKQI] human gut metagenome; human gut
21161
21237
+
fMet
CAT
[ENA]
¢þ
>WENV182865073
OKQI01000007
[OKQI] human gut metagenome; human gut
51609
51682
+
Gly
CCC
[ENA]
¢þ
>WENV182865071
OKQI01000003
[OKQI] human gut metagenome; human gut
57529
57605
+
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK