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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OKTQ] human gut metagenome; feces
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182914768
OKTQ01000279
[OKTQ] human gut metagenome; feces
39
121
+
Leu
CAG
[ENA]
¢þ
>WENV182914764
OKTQ01000006
[OKTQ] human gut metagenome; feces
111
36
-
Asn
GTT
[ENA]
¢þ
>WENV182914774
OKTQ01000301
[OKTQ] human gut metagenome; feces
111
36
-
Ile2
CAT
[ENA]
¢þ
>WENV182914776
OKTQ01000320
[OKTQ] human gut metagenome; feces
143
217
+
Ile
GAT
[ENA]
¢þ
>WENV182914769
OKTQ01000279
[OKTQ] human gut metagenome; feces
167
251
+
Leu
GAG
[ENA]
¢þ
>WENV182914773
OKTQ01000301
[OKTQ] human gut metagenome; feces
187
114
-
Thr
TGT
[ENA]
¢þ
>WENV182914777
OKTQ01000320
[OKTQ] human gut metagenome; feces
242
316
+
Ala
TGC
[ENA]
¢þ
>WENV182914770
OKTQ01000279
[OKTQ] human gut metagenome; feces
267
340
+
Gly
GCC
[ENA]
¢þ
>WENV182914772
OKTQ01000301
[OKTQ] human gut metagenome; feces
271
199
-
Glu
TTC
[ENA]
¢þ
>WENV182914775
OKTQ01000317
[OKTQ] human gut metagenome; feces
310
237
-
Trp
CCA
[ENA]
¢þ
>WENV182914771
OKTQ01000301
[OKTQ] human gut metagenome; feces
359
286
-
Asn
GTT
[ENA]
¢þ
>WENV182914778
OKTQ01000502
[OKTQ] human gut metagenome; feces
412
338
-
fMet
CAT
[ENA]
¢þ
>WENV182914767
OKTQ01000217
[OKTQ] human gut metagenome; feces
525
439
-
Leu
CAG
[ENA]
¢þ
>WENV182914765
OKTQ01000036
[OKTQ] human gut metagenome; feces
1419
1494
+
Ala
TGC
[ENA]
¢þ
>WENV182914766
OKTQ01000036
[OKTQ] human gut metagenome; feces
1498
1574
+
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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