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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OKUK] human gut metagenome; feces
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182925386
OKUK01002164
[OKUK] human gut metagenome; feces
20
93
+
Val
TAC
[ENA]
¢þ
>WENV182925379
OKUK01001266
[OKUK] human gut metagenome; feces
59
134
+
Val
GAC
[ENA]
¢þ
>WENV182925375
OKUK01000895
[OKUK] human gut metagenome; feces
70
153
+
Leu
CAG
[ENA]
¢þ
>WENV182925391
OKUK01002372
[OKUK] human gut metagenome; feces
75
161
+
Leu
TAA
[ENA]
¢þ
>WENV182925397
OKUK01004042
[OKUK] human gut metagenome; feces
75
163
+
Ser
GGA
[ENA]
¢þ
>WENV182925371
OKUK01000377
[OKUK] human gut metagenome; feces
80
151
+
Cys
GCA
[ENA]
¢þ
>WENV182925402
OKUK01004235
[OKUK] human gut metagenome; feces
86
13
-
Gln
TTG
[ENA]
¢þ
>WENV182925387
OKUK01002164
[OKUK] human gut metagenome; feces
101
177
+
Asp
GTC
[ENA]
¢þ
>WENV182925395
OKUK01003302
[OKUK] human gut metagenome; feces
105
180
+
Val
TAC
[ENA]
¢þ
>WENV182925390
OKUK01002184
[OKUK] human gut metagenome; feces
127
207
+
Leu
TAA
[ENA]
¢þ
>WENV182925381
OKUK01001353
[OKUK] human gut metagenome; feces
134
221
+
Ser
CGA
[ENA]
¢þ
>WENV182925374
OKUK01000459
[OKUK] human gut metagenome; feces
138
67
-
Cys
GCA
[ENA]
¢þ
>WENV182925394
OKUK01003168
[OKUK] human gut metagenome; feces
155
84
-
Gln
CTG
[ENA]
¢þ
>WENV182925388
OKUK01002164
[OKUK] human gut metagenome; feces
182
257
+
Phe
GAA
[ENA]
¢þ
>WENV182925372
OKUK01000377
[OKUK] human gut metagenome; feces
191
263
+
Val
GAC
[ENA]
¢þ
>WENV182925401
OKUK01004235
[OKUK] human gut metagenome; feces
214
139
-
His
GTG
[ENA]
¢þ
>WENV182925389
OKUK01002164
[OKUK] human gut metagenome; feces
295
370
+
Gly
GCC
[ENA]
¢þ
>WENV182925400
OKUK01004235
[OKUK] human gut metagenome; feces
304
228
-
Arg
TCT
[ENA]
¢þ
>WENV182925373
OKUK01000377
[OKUK] human gut metagenome; feces
308
381
+
Val
CAC
[ENA]
¢þ
>WENV182925377
OKUK01001020
[OKUK] human gut metagenome; feces
357
433
+
fMet
CAT
[ENA]
¢þ
>WENV182925393
OKUK01002962
[OKUK] human gut metagenome; feces
366
292
-
Cys
GCA
[ENA]
¢þ
>WENV182925378
OKUK01001104
[OKUK] human gut metagenome; feces
377
459
+
Tyr
GTA
[ENA]
¢þ
>WENV182925385
OKUK01002037
[OKUK] human gut metagenome; feces
394
467
+
Gly
CCC
[ENA]
¢þ
>WENV182925399
OKUK01004235
[OKUK] human gut metagenome; feces
411
338
-
Gly
TCC
[ENA]
¢þ
>WENV182925396
OKUK01003559
[OKUK] human gut metagenome; feces
417
508
+
Ser
GCT
[ENA]
¢þ
>WENV182925380
OKUK01001266
[OKUK] human gut metagenome; feces
433
508
+
Pro
CGG
[ENA]
¢þ
>WENV182925392
OKUK01002962
[OKUK] human gut metagenome; feces
456
385
-
Asn
GTT
[ENA]
¢þ
>WENV182925384
OKUK01001511
[OKUK] human gut metagenome; feces
485
404
-
Leu
TAG
[ENA]
¢þ
>WENV182925398
OKUK01004235
[OKUK] human gut metagenome; feces
490
415
-
Pro
TGG
[ENA]
¢þ
>WENV182925382
OKUK01001383
[OKUK] human gut metagenome; feces
578
652
+
Arg
ACG
[ENA]
¢þ
>WENV182925376
OKUK01000983
[OKUK] human gut metagenome; feces
606
682
+
Arg
ACG
[ENA]
¢þ
>WENV182925383
OKUK01001511
[OKUK] human gut metagenome; feces
653
578
-
Thr
CGT
[ENA]
¢þ
>WENV182925370
OKUK01000286
[OKUK] human gut metagenome; feces
1038
964
-
Pro
CGG
[ENA]
¢þ
>WENV182925369
OKUK01000111
[OKUK] human gut metagenome; feces
1325
1250
-
Trp
CCA
[ENA]
¢þ
>WENV182925367
OKUK01000027
[OKUK] human gut metagenome; feces
1624
1550
-
Gln
CTG
[ENA]
¢þ
>WENV182925366
OKUK01000027
[OKUK] human gut metagenome; feces
1735
1662
-
Glu
CTC
[ENA]
¢þ
>WENV182925368
OKUK01000061
[OKUK] human gut metagenome; feces
1947
1872
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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