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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
[OKWM] human gut metagenome; stool
HIT:
91 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182961960
OKWM01000007
[OKWM] human gut metagenome; stool
2
77
+
Lys
TTT
[ENA]
¢þ
>WENV182961940
OKWM01000002
[OKWM] human gut metagenome; stool
3
77
+
Gln
CTG
[ENA]
¢þ
>WENV182961979
OKWM01000020
[OKWM] human gut metagenome; stool
6
82
+
Arg
ACG
[ENA]
¢þ
>WENV182961994
OKWM01000038
[OKWM] human gut metagenome; stool
6
82
+
fMet
CAT
[ENA]
¢þ
>WENV182962029
OKWM01001692
[OKWM] human gut metagenome; stool
30
116
+
Leu
TAA
[ENA]
¢þ
>WENV182961998
OKWM01000040
[OKWM] human gut metagenome; stool
77
2
-
Ala
GGC
[ENA]
¢þ
>WENV182961969
OKWM01000013
[OKWM] human gut metagenome; stool
77
2
-
Gly
GCC
[ENA]
¢þ
>WENV182961989
OKWM01000029
[OKWM] human gut metagenome; stool
77
2
-
Val
TAC
[ENA]
¢þ
>WENV182962020
OKWM01001131
[OKWM] human gut metagenome; stool
85
169
+
Leu
TAG
[ENA]
¢þ
>WENV182962007
OKWM01000225
[OKWM] human gut metagenome; stool
89
14
-
Lys
CTT
[ENA]
¢þ
>WENV182962014
OKWM01000438
[OKWM] human gut metagenome; stool
103
178
+
Ala
TGC
[ENA]
¢þ
>WENV182962027
OKWM01001189
[OKWM] human gut metagenome; stool
104
29
-
Val
TAC
[ENA]
¢þ
>WENV182961941
OKWM01000002
[OKWM] human gut metagenome; stool
113
187
+
Gln
CTG
[ENA]
¢þ
>WENV182961995
OKWM01000038
[OKWM] human gut metagenome; stool
128
204
+
fMet
CAT
[ENA]
¢þ
>WENV182962030
OKWM01001692
[OKWM] human gut metagenome; stool
135
210
+
Lys
TTT
[ENA]
¢þ
>WENV182962010
OKWM01000296
[OKWM] human gut metagenome; stool
165
92
-
Val
TAC
[ENA]
¢þ
>WENV182961988
OKWM01000029
[OKWM] human gut metagenome; stool
180
105
-
Lys
TTT
[ENA]
¢þ
>WENV182962026
OKWM01001189
[OKWM] human gut metagenome; stool
182
108
-
Glu
TTC
[ENA]
¢þ
>WENV182962021
OKWM01001131
[OKWM] human gut metagenome; stool
193
267
+
Gln
TTG
[ENA]
¢þ
>WENV182961996
OKWM01000038
[OKWM] human gut metagenome; stool
250
326
+
fMet
CAT
[ENA]
¢þ
>WENV182962028
OKWM01001375
[OKWM] human gut metagenome; stool
258
184
-
Arg
CCG
[ENA]
¢þ
>WENV182962025
OKWM01001189
[OKWM] human gut metagenome; stool
262
187
-
Asn
GTT
[ENA]
¢þ
>WENV182962019
OKWM01001097
[OKWM] human gut metagenome; stool
265
192
-
Gly
GCC
[ENA]
¢þ
>WENV182962006
OKWM01000225
[OKWM] human gut metagenome; stool
270
196
-
Gly
GCC
[ENA]
¢þ
>WENV182962009
OKWM01000296
[OKWM] human gut metagenome; stool
277
203
-
Asp
GTC
[ENA]
¢þ
>WENV182962013
OKWM01000432
[OKWM] human gut metagenome; stool
290
217
-
Asn
GTT
[ENA]
¢þ
>WENV182962018
OKWM01000998
[OKWM] human gut metagenome; stool
300
390
+
Ser
GGA
[ENA]
¢þ
>WENV182962022
OKWM01001131
[OKWM] human gut metagenome; stool
304
378
+
Gln
TTG
[ENA]
¢þ
>WENV182962017
OKWM01000840
[OKWM] human gut metagenome; stool
307
390
+
Leu
CAA
[ENA]
¢þ
>WENV182961963
OKWM01000009
[OKWM] human gut metagenome; stool
319
235
-
Tyr
GTA
[ENA]
¢þ
>WENV182962005
OKWM01000225
[OKWM] human gut metagenome; stool
357
281
-
Asp
GTC
[ENA]
¢þ
>WENV182962008
OKWM01000296
[OKWM] human gut metagenome; stool
380
306
-
Ile2
CAT
[ENA]
¢þ
>WENV182962023
OKWM01001131
[OKWM] human gut metagenome; stool
402
478
+
Met
CAT
[ENA]
¢þ
>WENV182961993
OKWM01000036
[OKWM] human gut metagenome; stool
412
337
-
Thr
GGT
[ENA]
¢þ
>WENV182962004
OKWM01000225
[OKWM] human gut metagenome; stool
438
363
-
Val
TAC
[ENA]
¢þ
>WENV182961992
OKWM01000036
[OKWM] human gut metagenome; stool
492
418
-
Gly
TCC
[ENA]
¢þ
>WENV182962024
OKWM01001131
[OKWM] human gut metagenome; stool
524
598
+
Gln
CTG
[ENA]
¢þ
>WENV182962012
OKWM01000312
[OKWM] human gut metagenome; stool
536
462
-
Lys
TTT
[ENA]
¢þ
>WENV182962003
OKWM01000225
[OKWM] human gut metagenome; stool
605
530
-
Asn
GTT
[ENA]
¢þ
>WENV182962011
OKWM01000312
[OKWM] human gut metagenome; stool
612
538
-
Asp
GTC
[ENA]
¢þ
>WENV182961962
OKWM01000009
[OKWM] human gut metagenome; stool
619
535
-
Tyr
GTA
[ENA]
¢þ
>WENV182962016
OKWM01000578
[OKWM] human gut metagenome; stool
660
572
-
Leu
TAA
[ENA]
¢þ
>WENV182962002
OKWM01000225
[OKWM] human gut metagenome; stool
685
611
-
Gly
GCC
[ENA]
¢þ
>WENV182961991
OKWM01000036
[OKWM] human gut metagenome; stool
692
608
-
Tyr
GTA
[ENA]
¢þ
>WENV182961999
OKWM01000055
[OKWM] human gut metagenome; stool
693
604
-
Ser
GCT
[ENA]
¢þ
>WENV182962001
OKWM01000209
[OKWM] human gut metagenome; stool
740
666
-
Ala
TGC
[ENA]
¢þ
>WENV182962015
OKWM01000578
[OKWM] human gut metagenome; stool
749
677
-
Gly
GCC
[ENA]
¢þ
>WENV182961990
OKWM01000036
[OKWM] human gut metagenome; stool
778
703
-
Thr
TGT
[ENA]
¢þ
>WENV182962000
OKWM01000164
[OKWM] human gut metagenome; stool
1123
1047
-
Arg
ACG
[ENA]
¢þ
>WENV182961997
OKWM01000040
[OKWM] human gut metagenome; stool
2786
2861
+
Val
TAC
[ENA]
¢þ
>WENV182961946
OKWM01000003
[OKWM] human gut metagenome; stool
10187
10093
-
SeC
TCA
[ENA]
¢þ
>WENV182961970
OKWM01000014
[OKWM] human gut metagenome; stool
19674
19761
+
Ser
TGA
[ENA]
¢þ
>WENV182961974
OKWM01000015
[OKWM] human gut metagenome; stool
29540
29464
-
Val
GAC
[ENA]
¢þ
>WENV182961973
OKWM01000015
[OKWM] human gut metagenome; stool
29620
29544
-
Val
GAC
[ENA]
¢þ
>WENV182961972
OKWM01000015
[OKWM] human gut metagenome; stool
29700
29624
-
Val
GAC
[ENA]
¢þ
>WENV182961968
OKWM01000013
[OKWM] human gut metagenome; stool
40542
40617
+
Phe
GAA
[ENA]
¢þ
>WENV182961965
OKWM01000011
[OKWM] human gut metagenome; stool
47843
47918
+
Phe
GAA
[ENA]
¢þ
>WENV182961984
OKWM01000024
[OKWM] human gut metagenome; stool
48386
48310
-
Pro
TGG
[ENA]
¢þ
>WENV182961983
OKWM01000024
[OKWM] human gut metagenome; stool
48515
48429
-
Leu
CAG
[ENA]
¢þ
>WENV182961982
OKWM01000024
[OKWM] human gut metagenome; stool
48613
48538
-
His
GTG
[ENA]
¢þ
>WENV182961981
OKWM01000024
[OKWM] human gut metagenome; stool
48745
48669
-
Arg
CCG
[ENA]
¢þ
>WENV182961987
OKWM01000029
[OKWM] human gut metagenome; stool
62810
62886
+
Met
CAT
[ENA]
¢þ
>WENV182961985
OKWM01000025
[OKWM] human gut metagenome; stool
85155
85241
+
Leu
CAG
[ENA]
¢þ
>WENV182961986
OKWM01000025
[OKWM] human gut metagenome; stool
85271
85357
+
Leu
CAG
[ENA]
¢þ
>WENV182961978
OKWM01000017
[OKWM] human gut metagenome; stool
85873
85797
-
fMet
CAT
[ENA]
¢þ
>WENV182961980
OKWM01000024
[OKWM] human gut metagenome; stool
86740
86665
-
Trp
CCA
[ENA]
¢þ
>WENV182961977
OKWM01000017
[OKWM] human gut metagenome; stool
89719
89633
-
Leu
GAG
[ENA]
¢þ
>WENV182961956
OKWM01000005
[OKWM] human gut metagenome; stool
102999
103075
+
Pro
GGG
[ENA]
¢þ
>WENV182961967
OKWM01000012
[OKWM] human gut metagenome; stool
125325
125252
-
Gly
CCC
[ENA]
¢þ
>WENV182961955
OKWM01000004
[OKWM] human gut metagenome; stool
129294
129219
-
Asn
GTT
[ENA]
¢þ
>WENV182961961
OKWM01000008
[OKWM] human gut metagenome; stool
129359
129443
+
Leu
CAA
[ENA]
¢þ
>WENV182961954
OKWM01000004
[OKWM] human gut metagenome; stool
129571
129496
-
Asn
GTT
[ENA]
¢þ
>WENV182961947
OKWM01000004
[OKWM] human gut metagenome; stool
131328
131403
+
Asn
GTT
[ENA]
¢þ
>WENV182961945
OKWM01000003
[OKWM] human gut metagenome; stool
140596
140672
+
Pro
CGG
[ENA]
¢þ
>WENV182961975
OKWM01000016
[OKWM] human gut metagenome; stool
140726
140818
+
Ser
GCT
[ENA]
¢þ
>WENV182961976
OKWM01000016
[OKWM] human gut metagenome; stool
140823
140899
+
Arg
ACG
[ENA]
¢þ
>WENV182961966
OKWM01000011
[OKWM] human gut metagenome; stool
141247
141322
+
Ile2
CAT
[ENA]
¢þ
>WENV182961953
OKWM01000004
[OKWM] human gut metagenome; stool
145626
145551
-
Asn
GTT
[ENA]
¢þ
>WENV182961952
OKWM01000004
[OKWM] human gut metagenome; stool
149064
148989
-
Asn
GTT
[ENA]
¢þ
>WENV182961948
OKWM01000004
[OKWM] human gut metagenome; stool
150056
150145
+
Ser
CGA
[ENA]
¢þ
>WENV182961971
OKWM01000014
[OKWM] human gut metagenome; stool
152950
152863
-
Ser
GGA
[ENA]
¢þ
>WENV182961944
OKWM01000002
[OKWM] human gut metagenome; stool
170993
170917
-
Arg
TCT
[ENA]
¢þ
>WENV182961949
OKWM01000004
[OKWM] human gut metagenome; stool
171559
171634
+
Gly
GCC
[ENA]
¢þ
>WENV182961950
OKWM01000004
[OKWM] human gut metagenome; stool
171675
171748
+
Cys
GCA
[ENA]
¢þ
>WENV182961951
OKWM01000004
[OKWM] human gut metagenome; stool
171762
171848
+
Leu
TAA
[ENA]
¢þ
>WENV182961964
OKWM01000010
[OKWM] human gut metagenome; stool
182266
182191
-
Lys
TTT
[ENA]
¢þ
>WENV182961957
OKWM01000005
[OKWM] human gut metagenome; stool
220016
220090
+
Arg
CCT
[ENA]
¢þ
>WENV182961959
OKWM01000005
[OKWM] human gut metagenome; stool
240521
240446
-
Ala
GGC
[ENA]
¢þ
>WENV182961958
OKWM01000005
[OKWM] human gut metagenome; stool
240638
240563
-
Ala
GGC
[ENA]
¢þ
>WENV182961942
OKWM01000002
[OKWM] human gut metagenome; stool
375548
375623
+
Thr
CGT
[ENA]
¢þ
>WENV182961943
OKWM01000002
[OKWM] human gut metagenome; stool
432963
432887
-
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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