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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKXF] human gut metagenome; human gut
HIT:
158 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182970694
OKXF01000018
[OKXF] human gut metagenome; human gut
1
73
+
Arg
CCT
[ENA]
¢þ
>WENV182970779
OKXF01002444
[OKXF] human gut metagenome; human gut
1
75
+
Gly
TCC
[ENA]
¢þ
>WENV182970830
OKXF01011007
[OKXF] human gut metagenome; human gut
1
84
+
Tyr
GTA
[ENA]
¢þ
>WENV182970738
OKXF01000746
[OKXF] human gut metagenome; human gut
2
73
+
Gln
TTG
[ENA]
¢þ
>WENV182970829
OKXF01009970
[OKXF] human gut metagenome; human gut
44
126
+
Leu
CAG
[ENA]
¢þ
>WENV182970837
OKXF01013232
[OKXF] human gut metagenome; human gut
59
134
+
Thr
CGT
[ENA]
¢þ
>WENV182970832
OKXF01011386
[OKXF] human gut metagenome; human gut
64
152
+
Ser
GGA
[ENA]
¢þ
>WENV182970772
OKXF01002113
[OKXF] human gut metagenome; human gut
74
1
-
Pro
CGG
[ENA]
¢þ
>WENV182970823
OKXF01008764
[OKXF] human gut metagenome; human gut
86
11
-
Pro
TGG
[ENA]
¢þ
>WENV182970807
OKXF01005602
[OKXF] human gut metagenome; human gut
94
170
+
Asn
GTT
[ENA]
¢þ
>WENV182970720
OKXF01000253
[OKXF] human gut metagenome; human gut
96
11
-
Ser
TGA
[ENA]
¢þ
>WENV182970810
OKXF01005946
[OKXF] human gut metagenome; human gut
104
28
-
Arg
TCT
[ENA]
¢þ
>WENV182970836
OKXF01013231
[OKXF] human gut metagenome; human gut
126
202
+
Arg
CCT
[ENA]
¢þ
>WENV182970764
OKXF01001605
[OKXF] human gut metagenome; human gut
128
52
-
Arg
CCT
[ENA]
¢þ
>WENV182970780
OKXF01002819
[OKXF] human gut metagenome; human gut
146
60
-
Leu
TAA
[ENA]
¢þ
>WENV182970819
OKXF01007639
[OKXF] human gut metagenome; human gut
146
221
+
Ala
TGC
[ENA]
¢þ
>WENV182970825
OKXF01009043
[OKXF] human gut metagenome; human gut
147
64
-
Leu
CAG
[ENA]
¢þ
>WENV182970816
OKXF01007164
[OKXF] human gut metagenome; human gut
150
225
+
Ala
TGC
[ENA]
¢þ
>WENV182970811
OKXF01006141
[OKXF] human gut metagenome; human gut
161
85
-
Asp
GTC
[ENA]
¢þ
>WENV182970843
OKXF01014209
[OKXF] human gut metagenome; human gut
165
91
-
Lys
TTT
[ENA]
¢þ
>WENV182970771
OKXF01002113
[OKXF] human gut metagenome; human gut
177
104
-
Gln
CTG
[ENA]
¢þ
>WENV182970809
OKXF01005946
[OKXF] human gut metagenome; human gut
181
108
-
Gly
TCC
[ENA]
¢þ
>WENV182970803
OKXF01005103
[OKXF] human gut metagenome; human gut
187
99
-
Ser
TGA
[ENA]
¢þ
>WENV182970786
OKXF01003474
[OKXF] human gut metagenome; human gut
200
130
-
Gly
TCC
[ENA]
¢þ
>WENV182970831
OKXF01011007
[OKXF] human gut metagenome; human gut
203
275
+
Thr
GGT
[ENA]
¢þ
>WENV182970754
OKXF01001191
[OKXF] human gut metagenome; human gut
225
149
-
Arg
ACG
[ENA]
¢þ
>WENV182970820
OKXF01007639
[OKXF] human gut metagenome; human gut
225
301
+
Ile
GAT
[ENA]
¢þ
>WENV182970817
OKXF01007164
[OKXF] human gut metagenome; human gut
230
306
+
Ile
GAT
[ENA]
¢þ
>WENV182970782
OKXF01003136
[OKXF] human gut metagenome; human gut
234
309
+
Ala
TGC
[ENA]
¢þ
>WENV182970824
OKXF01009043
[OKXF] human gut metagenome; human gut
238
158
-
Leu
TAG
[ENA]
¢þ
>WENV182970800
OKXF01004573
[OKXF] human gut metagenome; human gut
254
179
-
Ile2
CAT
[ENA]
¢þ
>WENV182970818
OKXF01007188
[OKXF] human gut metagenome; human gut
266
356
+
Ser
GGA
[ENA]
¢þ
>WENV182970802
OKXF01005103
[OKXF] human gut metagenome; human gut
271
196
-
Thr
GGT
[ENA]
¢þ
>WENV182970757
OKXF01001300
[OKXF] human gut metagenome; human gut
286
361
+
Gln
CTG
[ENA]
¢þ
>WENV182970799
OKXF01004560
[OKXF] human gut metagenome; human gut
289
365
+
Arg
ACG
[ENA]
¢þ
>WENV182970770
OKXF01001991
[OKXF] human gut metagenome; human gut
294
219
-
Thr
CGT
[ENA]
¢þ
>WENV182970785
OKXF01003474
[OKXF] human gut metagenome; human gut
296
222
-
Phe
GAA
[ENA]
¢þ
>WENV182970713
OKXF01000119
[OKXF] human gut metagenome; human gut
297
222
-
Pro
TGG
[ENA]
¢þ
>WENV182970842
OKXF01014209
[OKXF] human gut metagenome; human gut
300
228
-
Gln
TTG
[ENA]
¢þ
>WENV182970839
OKXF01013412
[OKXF] human gut metagenome; human gut
308
233
-
fMet
CAT
[ENA]
¢þ
>WENV182970749
OKXF01001016
[OKXF] human gut metagenome; human gut
321
396
+
Ala
TGC
[ENA]
¢þ
>WENV182970787
OKXF01003497
[OKXF] human gut metagenome; human gut
325
412
+
Ser
GCT
[ENA]
¢þ
>WENV182970827
OKXF01009693
[OKXF] human gut metagenome; human gut
345
419
+
Ala
GGC
[ENA]
¢þ
>WENV182970838
OKXF01013232
[OKXF] human gut metagenome; human gut
372
290
-
Leu
TAG
[ENA]
¢þ
>WENV182970789
OKXF01003652
[OKXF] human gut metagenome; human gut
374
449
+
Gly
CCC
[ENA]
¢þ
>WENV182970784
OKXF01003474
[OKXF] human gut metagenome; human gut
375
301
-
fMet
CAT
[ENA]
¢þ
>WENV182970841
OKXF01014209
[OKXF] human gut metagenome; human gut
379
304
-
His
GTG
[ENA]
¢þ
>WENV182970835
OKXF01011700
[OKXF] human gut metagenome; human gut
397
321
-
Ile
GAT
[ENA]
¢þ
>WENV182970821
OKXF01008637
[OKXF] human gut metagenome; human gut
411
486
+
Lys
CTT
[ENA]
¢þ
>WENV182970750
OKXF01001016
[OKXF] human gut metagenome; human gut
431
507
+
Ile
GAT
[ENA]
¢þ
>WENV182970828
OKXF01009785
[OKXF] human gut metagenome; human gut
445
521
+
Trp
CCA
[ENA]
¢þ
>WENV182970840
OKXF01014209
[OKXF] human gut metagenome; human gut
457
383
-
Arg
TCT
[ENA]
¢þ
>WENV182970793
OKXF01004056
[OKXF] human gut metagenome; human gut
459
532
+
Asn
GTT
[ENA]
¢þ
>WENV182970834
OKXF01011700
[OKXF] human gut metagenome; human gut
475
400
-
Ala
TGC
[ENA]
¢þ
>WENV182970822
OKXF01008637
[OKXF] human gut metagenome; human gut
488
562
+
Glu
CTC
[ENA]
¢þ
>WENV182970826
OKXF01009392
[OKXF] human gut metagenome; human gut
489
417
-
Arg
CCT
[ENA]
¢þ
>WENV182970725
OKXF01000385
[OKXF] human gut metagenome; human gut
505
422
-
Leu
CAA
[ENA]
¢þ
>WENV182970773
OKXF01002163
[OKXF] human gut metagenome; human gut
537
612
+
Trp
CCA
[ENA]
¢þ
>WENV182970762
OKXF01001546
[OKXF] human gut metagenome; human gut
545
620
+
Gly
CCC
[ENA]
¢þ
>WENV182970747
OKXF01000954
[OKXF] human gut metagenome; human gut
551
627
+
Asn
GTT
[ENA]
¢þ
>WENV182970794
OKXF01004056
[OKXF] human gut metagenome; human gut
562
635
+
Glu
TTC
[ENA]
¢þ
>WENV182970833
OKXF01011700
[OKXF] human gut metagenome; human gut
566
490
-
Ile
GAT
[ENA]
¢þ
>WENV182970734
OKXF01000652
[OKXF] human gut metagenome; human gut
596
671
+
Glu
TTC
[ENA]
¢þ
>WENV182970756
OKXF01001290
[OKXF] human gut metagenome; human gut
599
675
+
Arg
CCG
[ENA]
¢þ
>WENV182970783
OKXF01003474
[OKXF] human gut metagenome; human gut
606
531
-
Thr
TGT
[ENA]
¢þ
>WENV182970755
OKXF01001234
[OKXF] human gut metagenome; human gut
637
711
+
Met
CAT
[ENA]
¢þ
>WENV182970727
OKXF01000494
[OKXF] human gut metagenome; human gut
646
719
+
Lys
CTT
[ENA]
¢þ
>WENV182970778
OKXF01002321
[OKXF] human gut metagenome; human gut
690
765
+
Thr
CGT
[ENA]
¢þ
>WENV182970714
OKXF01000132
[OKXF] human gut metagenome; human gut
693
780
+
Ser
GCT
[ENA]
¢þ
>WENV182970788
OKXF01003562
[OKXF] human gut metagenome; human gut
704
778
+
Lys
TTT
[ENA]
¢þ
>WENV182970805
OKXF01005156
[OKXF] human gut metagenome; human gut
707
633
-
Ala
TGC
[ENA]
¢þ
>WENV182970814
OKXF01006829
[OKXF] human gut metagenome; human gut
709
784
+
His
GTG
[ENA]
¢þ
>WENV182970795
OKXF01004056
[OKXF] human gut metagenome; human gut
718
791
+
Asn
GTT
[ENA]
¢þ
>WENV182970812
OKXF01006192
[OKXF] human gut metagenome; human gut
744
669
-
Arg
CCT
[ENA]
¢þ
>WENV182970769
OKXF01001938
[OKXF] human gut metagenome; human gut
762
839
+
Arg
CCT
[ENA]
¢þ
>WENV182970815
OKXF01007118
[OKXF] human gut metagenome; human gut
777
705
-
Pro
TGG
[ENA]
¢þ
>WENV182970813
OKXF01006700
[OKXF] human gut metagenome; human gut
801
726
-
Val
GAC
[ENA]
¢þ
>WENV182970798
OKXF01004139
[OKXF] human gut metagenome; human gut
808
881
+
Ile2
CAT
[ENA]
¢þ
>WENV182970768
OKXF01001891
[OKXF] human gut metagenome; human gut
816
889
+
Ala
CGC
[ENA]
¢þ
>WENV182970796
OKXF01004056
[OKXF] human gut metagenome; human gut
827
898
+
Cys
GCA
[ENA]
¢þ
>WENV182970791
OKXF01003828
[OKXF] human gut metagenome; human gut
831
758
-
Gly
CCC
[ENA]
¢þ
>WENV182970808
OKXF01005936
[OKXF] human gut metagenome; human gut
834
759
-
Ile
GAT
[ENA]
¢þ
>WENV182970806
OKXF01005272
[OKXF] human gut metagenome; human gut
846
931
+
Tyr
GTA
[ENA]
¢þ
>WENV182970804
OKXF01005156
[OKXF] human gut metagenome; human gut
854
780
-
Ile
GAT
[ENA]
¢þ
>WENV182970801
OKXF01004740
[OKXF] human gut metagenome; human gut
883
956
+
Gly
CCC
[ENA]
¢þ
>WENV182970765
OKXF01001659
[OKXF] human gut metagenome; human gut
883
958
+
Arg
TCT
[ENA]
¢þ
>WENV182970767
OKXF01001784
[OKXF] human gut metagenome; human gut
892
801
-
Ser
GGA
[ENA]
¢þ
>WENV182970774
OKXF01002163
[OKXF] human gut metagenome; human gut
899
975
+
Asp
GTC
[ENA]
¢þ
>WENV182970766
OKXF01001659
[OKXF] human gut metagenome; human gut
966
1042
+
His
GTG
[ENA]
¢þ
>WENV182970752
OKXF01001127
[OKXF] human gut metagenome; human gut
970
1057
+
Ser
TGA
[ENA]
¢þ
>WENV182970781
OKXF01002974
[OKXF] human gut metagenome; human gut
975
899
-
fMet
CAT
[ENA]
¢þ
>WENV182970775
OKXF01002163
[OKXF] human gut metagenome; human gut
979
1054
+
Thr
GGT
[ENA]
¢þ
>WENV182970792
OKXF01003855
[OKXF] human gut metagenome; human gut
981
894
-
Ser
CGA
[ENA]
¢þ
>WENV182970739
OKXF01000753
[OKXF] human gut metagenome; human gut
1013
1089
+
fMet
CAT
[ENA]
¢þ
>WENV182970797
OKXF01004056
[OKXF] human gut metagenome; human gut
1018
1091
+
Asp
GTC
[ENA]
¢þ
>WENV182970790
OKXF01003783
[OKXF] human gut metagenome; human gut
1030
1116
+
Leu
CAG
[ENA]
¢þ
>WENV182970732
OKXF01000562
[OKXF] human gut metagenome; human gut
1035
1108
+
Trp
CCA
[ENA]
¢þ
>WENV182970753
OKXF01001127
[OKXF] human gut metagenome; human gut
1090
1183
+
Ser
GCT
[ENA]
¢þ
>WENV182970715
OKXF01000132
[OKXF] human gut metagenome; human gut
1134
1208
+
Glu
CTC
[ENA]
¢þ
>WENV182970760
OKXF01001524
[OKXF] human gut metagenome; human gut
1154
1230
+
Met
CAT
[ENA]
¢þ
>WENV182970758
OKXF01001344
[OKXF] human gut metagenome; human gut
1156
1073
-
Leu
TAA
[ENA]
¢þ
>WENV182970777
OKXF01002300
[OKXF] human gut metagenome; human gut
1266
1337
+
Gln
CTG
[ENA]
¢þ
>WENV182970761
OKXF01001524
[OKXF] human gut metagenome; human gut
1271
1345
+
Glu
TTC
[ENA]
¢þ
>WENV182970726
OKXF01000429
[OKXF] human gut metagenome; human gut
1492
1571
+
Leu
CAA
[ENA]
¢þ
>WENV182970776
OKXF01002236
[OKXF] human gut metagenome; human gut
1537
1613
+
Pro
CGG
[ENA]
¢þ
>WENV182970736
OKXF01000669
[OKXF] human gut metagenome; human gut
1572
1498
-
Ala
TGC
[ENA]
¢þ
>WENV182970740
OKXF01000773
[OKXF] human gut metagenome; human gut
1591
1664
+
fMet
CAT
[ENA]
¢þ
>WENV182970735
OKXF01000669
[OKXF] human gut metagenome; human gut
1663
1589
-
Ile
GAT
[ENA]
¢þ
>WENV182970763
OKXF01001556
[OKXF] human gut metagenome; human gut
1750
1831
+
Leu
TAG
[ENA]
¢þ
>WENV182970759
OKXF01001390
[OKXF] human gut metagenome; human gut
1781
1697
-
Tyr
GTA
[ENA]
¢þ
>WENV182970741
OKXF01000773
[OKXF] human gut metagenome; human gut
1881
1954
+
Asn
GTT
[ENA]
¢þ
>WENV182970733
OKXF01000608
[OKXF] human gut metagenome; human gut
1903
1830
-
Gln
TTG
[ENA]
¢þ
>WENV182970751
OKXF01001042
[OKXF] human gut metagenome; human gut
1922
1840
-
Leu
TAG
[ENA]
¢þ
>WENV182970742
OKXF01000773
[OKXF] human gut metagenome; human gut
1961
2034
+
Trp
CCA
[ENA]
¢þ
>WENV182970743
OKXF01000773
[OKXF] human gut metagenome; human gut
2039
2110
+
Gln
TTG
[ENA]
¢þ
>WENV182970744
OKXF01000773
[OKXF] human gut metagenome; human gut
2115
2187
+
Glu
TTC
[ENA]
¢þ
>WENV182970748
OKXF01000960
[OKXF] human gut metagenome; human gut
2233
2317
+
Tyr
GTA
[ENA]
¢þ
>WENV182970731
OKXF01000556
[OKXF] human gut metagenome; human gut
2270
2196
-
Thr
TGT
[ENA]
¢þ
>WENV182970745
OKXF01000773
[OKXF] human gut metagenome; human gut
2351
2433
+
Tyr
GTA
[ENA]
¢þ
>WENV182970708
OKXF01000067
[OKXF] human gut metagenome; human gut
2378
2304
-
Cys
GCA
[ENA]
¢þ
>WENV182970746
OKXF01000808
[OKXF] human gut metagenome; human gut
2699
2616
-
Leu
GAG
[ENA]
¢þ
>WENV182970721
OKXF01000266
[OKXF] human gut metagenome; human gut
2762
2836
+
Glu
CTC
[ENA]
¢þ
>WENV182970737
OKXF01000727
[OKXF] human gut metagenome; human gut
2767
2858
+
Ser
CGA
[ENA]
¢þ
>WENV182970728
OKXF01000551
[OKXF] human gut metagenome; human gut
2795
2870
+
Gly
GCC
[ENA]
¢þ
>WENV182970722
OKXF01000266
[OKXF] human gut metagenome; human gut
2840
2915
+
Lys
CTT
[ENA]
¢þ
>WENV182970729
OKXF01000551
[OKXF] human gut metagenome; human gut
2974
3046
+
Thr
TGT
[ENA]
¢þ
>WENV182970730
OKXF01000551
[OKXF] human gut metagenome; human gut
3146
3221
+
Trp
CCA
[ENA]
¢þ
>WENV182970706
OKXF01000058
[OKXF] human gut metagenome; human gut
3427
3499
+
Arg
CCG
[ENA]
¢þ
>WENV182970718
OKXF01000165
[OKXF] human gut metagenome; human gut
3652
3576
-
Val
CAC
[ENA]
¢þ
>WENV182970717
OKXF01000163
[OKXF] human gut metagenome; human gut
4273
4348
+
Lys
TTT
[ENA]
¢þ
>WENV182970723
OKXF01000344
[OKXF] human gut metagenome; human gut
4655
4731
+
Met
CAT
[ENA]
¢þ
>WENV182970724
OKXF01000344
[OKXF] human gut metagenome; human gut
4823
4894
+
Glu
TTC
[ENA]
¢þ
>WENV182970719
OKXF01000207
[OKXF] human gut metagenome; human gut
5973
6048
+
Thr
GGT
[ENA]
¢þ
>WENV182970696
OKXF01000022
[OKXF] human gut metagenome; human gut
6856
6768
-
Ser
GGA
[ENA]
¢þ
>WENV182970711
OKXF01000072
[OKXF] human gut metagenome; human gut
6894
6809
-
Ser
TGA
[ENA]
¢þ
>WENV182970700
OKXF01000039
[OKXF] human gut metagenome; human gut
7357
7445
+
Ser
GGA
[ENA]
¢þ
>WENV182970692
OKXF01000015
[OKXF] human gut metagenome; human gut
8479
8407
-
Glu
TTC
[ENA]
¢þ
>WENV182970688
OKXF01000004
[OKXF] human gut metagenome; human gut
9539
9464
-
Phe
GAA
[ENA]
¢þ
>WENV182970687
OKXF01000004
[OKXF] human gut metagenome; human gut
9720
9793
+
Pro
CGG
[ENA]
¢þ
>WENV182970703
OKXF01000048
[OKXF] human gut metagenome; human gut
9894
9967
+
Phe
GAA
[ENA]
¢þ
>WENV182970716
OKXF01000134
[OKXF] human gut metagenome; human gut
10448
10373
-
His
GTG
[ENA]
¢þ
>WENV182970693
OKXF01000017
[OKXF] human gut metagenome; human gut
11301
11229
-
Arg
CCT
[ENA]
¢þ
>WENV182970712
OKXF01000097
[OKXF] human gut metagenome; human gut
12666
12593
-
Gly
GCC
[ENA]
¢þ
>WENV182970709
OKXF01000069
[OKXF] human gut metagenome; human gut
13789
13863
+
Asp
GTC
[ENA]
¢þ
>WENV182970704
OKXF01000050
[OKXF] human gut metagenome; human gut
17975
17893
-
Leu
TAG
[ENA]
¢þ
>WENV182970707
OKXF01000063
[OKXF] human gut metagenome; human gut
19393
19466
+
Thr
CGT
[ENA]
¢þ
>WENV182970710
OKXF01000072
[OKXF] human gut metagenome; human gut
20516
20589
+
Trp
CCA
[ENA]
¢þ
>WENV182970702
OKXF01000046
[OKXF] human gut metagenome; human gut
23903
23829
-
Asn
GTT
[ENA]
¢þ
>WENV182970699
OKXF01000034
[OKXF] human gut metagenome; human gut
28457
28383
-
Ala
GGC
[ENA]
¢þ
>WENV182970695
OKXF01000022
[OKXF] human gut metagenome; human gut
30116
30045
-
Gln
CTG
[ENA]
¢þ
>WENV182970705
OKXF01000053
[OKXF] human gut metagenome; human gut
30820
30894
+
Arg
TCT
[ENA]
¢þ
>WENV182970701
OKXF01000042
[OKXF] human gut metagenome; human gut
38122
38197
+
Gly
CCC
[ENA]
¢þ
>WENV182970697
OKXF01000023
[OKXF] human gut metagenome; human gut
45583
45659
+
Val
TAC
[ENA]
¢þ
>WENV182970690
OKXF01000013
[OKXF] human gut metagenome; human gut
46098
46024
-
Ile2
CAT
[ENA]
¢þ
>WENV182970698
OKXF01000028
[OKXF] human gut metagenome; human gut
47621
47694
+
fMet
CAT
[ENA]
¢þ
>WENV182970691
OKXF01000015
[OKXF] human gut metagenome; human gut
58648
58732
+
Leu
CAA
[ENA]
¢þ
>WENV182970689
OKXF01000007
[OKXF] human gut metagenome; human gut
81063
81137
+
Thr
TGT
[ENA]
¢þ
>WENV182970686
OKXF01000002
[OKXF] human gut metagenome; human gut
103769
103694
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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