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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKZB] human gut metagenome; human gut
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182982232
OKZB01002017
[OKZB] human gut metagenome; human gut
74
-1
-
Thr
TGT
[ENA]
¢þ
>WENV182982238
OKZB01003315
[OKZB] human gut metagenome; human gut
92
165
+
Cys
GCA
[ENA]
¢þ
>WENV182982237
OKZB01003014
[OKZB] human gut metagenome; human gut
104
20
-
Leu
CAA
[ENA]
¢þ
>WENV182982231
OKZB01002017
[OKZB] human gut metagenome; human gut
151
76
-
Asn
GTT
[ENA]
¢þ
>WENV182982224
OKZB01000994
[OKZB] human gut metagenome; human gut
164
90
-
Gln
TTG
[ENA]
¢þ
>WENV182982239
OKZB01003315
[OKZB] human gut metagenome; human gut
178
264
+
Leu
TAA
[ENA]
¢þ
>WENV182982227
OKZB01001183
[OKZB] human gut metagenome; human gut
197
121
-
Pro
GGG
[ENA]
¢þ
>WENV182982223
OKZB01000994
[OKZB] human gut metagenome; human gut
272
188
-
Leu
TAG
[ENA]
¢þ
>WENV182982214
OKZB01000301
[OKZB] human gut metagenome; human gut
336
412
+
Pro
CGG
[ENA]
¢þ
>WENV182982222
OKZB01000994
[OKZB] human gut metagenome; human gut
358
282
-
Met
CAT
[ENA]
¢þ
>WENV182982233
OKZB01002459
[OKZB] human gut metagenome; human gut
414
340
-
Arg
CCT
[ENA]
¢þ
>WENV182982230
OKZB01001951
[OKZB] human gut metagenome; human gut
451
376
-
Thr
CGT
[ENA]
¢þ
>WENV182982235
OKZB01002576
[OKZB] human gut metagenome; human gut
454
378
-
Arg
TCT
[ENA]
¢þ
>WENV182982228
OKZB01001590
[OKZB] human gut metagenome; human gut
468
395
-
Gly
CCC
[ENA]
¢þ
>WENV182982240
OKZB01003737
[OKZB] human gut metagenome; human gut
508
414
-
SeC
TCA
[ENA]
¢þ
>WENV182982236
OKZB01002639
[OKZB] human gut metagenome; human gut
535
611
+
Val
GAC
[ENA]
¢þ
>WENV182982229
OKZB01001858
[OKZB] human gut metagenome; human gut
562
649
+
Ser
GGA
[ENA]
¢þ
>WENV182982216
OKZB01000505
[OKZB] human gut metagenome; human gut
589
664
+
Gly
GCC
[ENA]
¢þ
>WENV182982234
OKZB01002576
[OKZB] human gut metagenome; human gut
630
555
-
Ile2
CAT
[ENA]
¢þ
>WENV182982212
OKZB01000069
[OKZB] human gut metagenome; human gut
709
785
+
Asp
GTC
[ENA]
¢þ
>WENV182982218
OKZB01000677
[OKZB] human gut metagenome; human gut
896
971
+
Thr
TGT
[ENA]
¢þ
>WENV182982215
OKZB01000427
[OKZB] human gut metagenome; human gut
923
836
-
Ser
TGA
[ENA]
¢þ
>WENV182982213
OKZB01000125
[OKZB] human gut metagenome; human gut
927
1002
+
Phe
GAA
[ENA]
¢þ
>WENV182982226
OKZB01001094
[OKZB] human gut metagenome; human gut
956
881
-
Lys
TTT
[ENA]
¢þ
>WENV182982217
OKZB01000629
[OKZB] human gut metagenome; human gut
964
1039
+
Asn
GTT
[ENA]
¢þ
>WENV182982219
OKZB01000677
[OKZB] human gut metagenome; human gut
980
1064
+
Tyr
GTA
[ENA]
¢þ
>WENV182982225
OKZB01001094
[OKZB] human gut metagenome; human gut
1036
961
-
Val
TAC
[ENA]
¢þ
>WENV182982220
OKZB01000677
[OKZB] human gut metagenome; human gut
1181
1255
+
Gly
TCC
[ENA]
¢þ
>WENV182982221
OKZB01000677
[OKZB] human gut metagenome; human gut
1262
1337
+
Thr
GGT
[ENA]
¢þ
>WENV182982211
OKZB01000029
[OKZB] human gut metagenome; human gut
2786
2711
-
Glu
TTC
[ENA]
¢þ
>WENV182982210
OKZB01000023
[OKZB] human gut metagenome; human gut
3024
3100
+
fMet
CAT
[ENA]
¢þ
>WENV182982209
OKZB01000017
[OKZB] human gut metagenome; human gut
4670
4584
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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