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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKZT] human gut metagenome; human gut
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182985960
OKZT01000030
[OKZT] human gut metagenome; human gut
48
123
+
Ala
TGC
[ENA]
¢þ
>WENV182986001
OKZT01004350
[OKZT] human gut metagenome; human gut
67
143
+
Ile
GAT
[ENA]
¢þ
>WENV182985973
OKZT01000603
[OKZT] human gut metagenome; human gut
92
174
+
Leu
TAG
[ENA]
¢þ
>WENV182985976
OKZT01000701
[OKZT] human gut metagenome; human gut
95
20
-
Lys
TTT
[ENA]
¢þ
>WENV182985988
OKZT01002105
[OKZT] human gut metagenome; human gut
139
215
+
Met
CAT
[ENA]
¢þ
>WENV182985993
OKZT01002671
[OKZT] human gut metagenome; human gut
152
236
+
Tyr
GTA
[ENA]
¢þ
>WENV182985978
OKZT01000817
[OKZT] human gut metagenome; human gut
169
243
+
Arg
TCT
[ENA]
¢þ
>WENV182985997
OKZT01003713
[OKZT] human gut metagenome; human gut
173
247
+
Trp
CCA
[ENA]
¢þ
>WENV182985975
OKZT01000701
[OKZT] human gut metagenome; human gut
183
111
-
Gln
TTG
[ENA]
¢þ
>WENV182985994
OKZT01003070
[OKZT] human gut metagenome; human gut
212
286
+
Thr
TGT
[ENA]
¢þ
>WENV182985964
OKZT01000050
[OKZT] human gut metagenome; human gut
229
320
+
Ser
CGA
[ENA]
¢þ
>WENV182985987
OKZT01001989
[OKZT] human gut metagenome; human gut
230
302
+
Pro
TGG
[ENA]
¢þ
>WENV182985992
OKZT01002667
[OKZT] human gut metagenome; human gut
235
160
-
Pro
TGG
[ENA]
¢þ
>WENV182985983
OKZT01001782
[OKZT] human gut metagenome; human gut
248
331
+
Leu
GAG
[ENA]
¢þ
>WENV182985998
OKZT01003713
[OKZT] human gut metagenome; human gut
249
324
+
Thr
CGT
[ENA]
¢þ
>WENV182985999
OKZT01003916
[OKZT] human gut metagenome; human gut
281
210
-
Gln
TTG
[ENA]
¢þ
>WENV182986000
OKZT01003935
[OKZT] human gut metagenome; human gut
299
211
-
Ser
GGA
[ENA]
¢þ
>WENV182985989
OKZT01002105
[OKZT] human gut metagenome; human gut
308
382
+
Glu
TTC
[ENA]
¢þ
>WENV182985990
OKZT01002228
[OKZT] human gut metagenome; human gut
311
390
+
Leu
CAA
[ENA]
¢þ
>WENV182985974
OKZT01000701
[OKZT] human gut metagenome; human gut
325
251
-
His
GTG
[ENA]
¢þ
>WENV182985995
OKZT01003070
[OKZT] human gut metagenome; human gut
329
412
+
Tyr
GTA
[ENA]
¢þ
>WENV182985991
OKZT01002265
[OKZT] human gut metagenome; human gut
359
440
+
Leu
TAG
[ENA]
¢þ
>WENV182985970
OKZT01000499
[OKZT] human gut metagenome; human gut
382
308
-
Ile2
CAT
[ENA]
¢þ
>WENV182985979
OKZT01000856
[OKZT] human gut metagenome; human gut
389
313
-
Ile
GAT
[ENA]
¢þ
>WENV182985985
OKZT01001884
[OKZT] human gut metagenome; human gut
391
466
+
Lys
CTT
[ENA]
¢þ
>WENV182985980
OKZT01001461
[OKZT] human gut metagenome; human gut
416
489
+
Gly
GCC
[ENA]
¢þ
>WENV182985969
OKZT01000499
[OKZT] human gut metagenome; human gut
487
412
-
Gly
GCC
[ENA]
¢þ
>WENV182985996
OKZT01003285
[OKZT] human gut metagenome; human gut
491
406
-
Leu
CAG
[ENA]
¢þ
>WENV182985963
OKZT01000042
[OKZT] human gut metagenome; human gut
495
583
+
Ser
GCT
[ENA]
¢þ
>WENV182985971
OKZT01000515
[OKZT] human gut metagenome; human gut
505
430
-
Lys
CTT
[ENA]
¢þ
>WENV182985986
OKZT01001884
[OKZT] human gut metagenome; human gut
517
591
+
Glu
CTC
[ENA]
¢þ
>WENV182985981
OKZT01001461
[OKZT] human gut metagenome; human gut
536
617
+
Leu
CAG
[ENA]
¢þ
>WENV182985984
OKZT01001782
[OKZT] human gut metagenome; human gut
537
456
-
Leu
TAG
[ENA]
¢þ
>WENV182985968
OKZT01000499
[OKZT] human gut metagenome; human gut
600
524
-
Asn
GTT
[ENA]
¢þ
>WENV182985965
OKZT01000347
[OKZT] human gut metagenome; human gut
613
688
+
Trp
CCA
[ENA]
¢þ
>WENV182985982
OKZT01001461
[OKZT] human gut metagenome; human gut
641
725
+
Leu
GAG
[ENA]
¢þ
>WENV182985977
OKZT01000789
[OKZT] human gut metagenome; human gut
653
582
-
Gln
TTG
[ENA]
¢þ
>WENV182985967
OKZT01000499
[OKZT] human gut metagenome; human gut
763
849
+
Leu
CAA
[ENA]
¢þ
>WENV182985972
OKZT01000552
[OKZT] human gut metagenome; human gut
802
727
-
Val
GAC
[ENA]
¢þ
>WENV182985966
OKZT01000347
[OKZT] human gut metagenome; human gut
896
821
-
Thr
GGT
[ENA]
¢þ
>WENV182985961
OKZT01000030
[OKZT] human gut metagenome; human gut
3255
3326
+
Asn
GTT
[ENA]
¢þ
>WENV182985962
OKZT01000030
[OKZT] human gut metagenome; human gut
3341
3413
+
Glu
TTC
[ENA]
¢þ
>WENV182985959
OKZT01000005
[OKZT] human gut metagenome; human gut
3713
3639
-
Ala
TGC
[ENA]
¢þ
>WENV182985958
OKZT01000005
[OKZT] human gut metagenome; human gut
3804
3730
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK