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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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HOW TO USE
tRNA gene List
[OLAD] human gut metagenome; human gut
HIT:
137 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182987607
OLAD01001083
[OLAD] human gut metagenome; human gut
2
77
+
Val
GAC
[ENA]
¢þ
>WENV182987608
OLAD01001191
[OLAD] human gut metagenome; human gut
12
88
+
Val
CAC
[ENA]
¢þ
>WENV182987653
OLAD01007508
[OLAD] human gut metagenome; human gut
18
90
+
Cys
GCA
[ENA]
¢þ
>WENV182987654
OLAD01008054
[OLAD] human gut metagenome; human gut
62
136
+
Glu
CTC
[ENA]
¢þ
>WENV182987650
OLAD01005754
[OLAD] human gut metagenome; human gut
78
2
-
Asp
GTC
[ENA]
¢þ
>WENV182987652
OLAD01007386
[OLAD] human gut metagenome; human gut
93
165
+
Thr
CGT
[ENA]
¢þ
>WENV182987651
OLAD01007285
[OLAD] human gut metagenome; human gut
110
182
+
Trp
CCA
[ENA]
¢þ
>WENV182987640
OLAD01004060
[OLAD] human gut metagenome; human gut
118
31
-
Ser
GGA
[ENA]
¢þ
>WENV182987605
OLAD01000847
[OLAD] human gut metagenome; human gut
124
198
+
Glu
CTC
[ENA]
¢þ
>WENV182987655
OLAD01008054
[OLAD] human gut metagenome; human gut
140
215
+
Lys
CTT
[ENA]
¢þ
>WENV182987609
OLAD01001211
[OLAD] human gut metagenome; human gut
141
65
-
Ile2
CAT
[ENA]
¢þ
>WENV182987622
OLAD01001694
[OLAD] human gut metagenome; human gut
154
83
-
Glu
TTC
[ENA]
¢þ
>WENV182987647
OLAD01005131
[OLAD] human gut metagenome; human gut
182
255
+
Asn
GTT
[ENA]
¢þ
>WENV182987613
OLAD01001519
[OLAD] human gut metagenome; human gut
188
270
+
Leu
GAG
[ENA]
¢þ
>WENV182987615
OLAD01001562
[OLAD] human gut metagenome; human gut
206
122
-
Leu
CAA
[ENA]
¢þ
>WENV182987560
OLAD01000100
[OLAD] human gut metagenome; human gut
224
131
-
Ser
GCT
[ENA]
¢þ
>WENV182987551
OLAD01000044
[OLAD] human gut metagenome; human gut
242
169
-
fMet
CAT
[ENA]
¢þ
>WENV182987639
OLAD01003908
[OLAD] human gut metagenome; human gut
270
197
-
Gly
CCC
[ENA]
¢þ
>WENV182987638
OLAD01003533
[OLAD] human gut metagenome; human gut
275
185
-
Ser
GCT
[ENA]
¢þ
>WENV182987642
OLAD01004297
[OLAD] human gut metagenome; human gut
308
395
+
Ser
TGA
[ENA]
¢þ
>WENV182987606
OLAD01000972
[OLAD] human gut metagenome; human gut
314
240
-
Thr
TGT
[ENA]
¢þ
>WENV182987648
OLAD01005131
[OLAD] human gut metagenome; human gut
318
390
+
Glu
CTC
[ENA]
¢þ
>WENV182987610
OLAD01001225
[OLAD] human gut metagenome; human gut
322
397
+
Trp
CCA
[ENA]
¢þ
>WENV182987649
OLAD01005303
[OLAD] human gut metagenome; human gut
334
410
+
Arg
CCG
[ENA]
¢þ
>WENV182987559
OLAD01000100
[OLAD] human gut metagenome; human gut
344
257
-
Ser
TGA
[ENA]
¢þ
>WENV182987612
OLAD01001389
[OLAD] human gut metagenome; human gut
350
425
+
Asn
GTT
[ENA]
¢þ
>WENV182987629
OLAD01002578
[OLAD] human gut metagenome; human gut
362
290
-
Lys
TTT
[ENA]
¢þ
>WENV182987633
OLAD01002890
[OLAD] human gut metagenome; human gut
375
450
+
Phe
GAA
[ENA]
¢þ
>WENV182987621
OLAD01001612
[OLAD] human gut metagenome; human gut
382
457
+
Thr
CGT
[ENA]
¢þ
>WENV182987597
OLAD01000617
[OLAD] human gut metagenome; human gut
388
314
-
Gly
TCC
[ENA]
¢þ
>WENV182987562
OLAD01000110
[OLAD] human gut metagenome; human gut
388
467
+
Leu
CAA
[ENA]
¢þ
>WENV182987643
OLAD01004297
[OLAD] human gut metagenome; human gut
402
493
+
Ser
GGA
[ENA]
¢þ
>WENV182987637
OLAD01003533
[OLAD] human gut metagenome; human gut
408
318
-
Ser
TGA
[ENA]
¢þ
>WENV182987656
OLAD01008295
[OLAD] human gut metagenome; human gut
426
340
-
Leu
CAG
[ENA]
¢þ
>WENV182987614
OLAD01001519
[OLAD] human gut metagenome; human gut
465
384
-
Leu
TAG
[ENA]
¢þ
>WENV182987644
OLAD01004307
[OLAD] human gut metagenome; human gut
475
570
+
SeC
TCA
[ENA]
¢þ
>WENV182987646
OLAD01004676
[OLAD] human gut metagenome; human gut
496
409
-
Ser
TGA
[ENA]
¢þ
>WENV182987627
OLAD01002120
[OLAD] human gut metagenome; human gut
502
431
-
Gln
TTG
[ENA]
¢þ
>WENV182987645
OLAD01004517
[OLAD] human gut metagenome; human gut
597
672
+
Ile2
CAT
[ENA]
¢þ
>WENV182987641
OLAD01004155
[OLAD] human gut metagenome; human gut
606
693
+
Ser
GCT
[ENA]
¢þ
>WENV182987630
OLAD01002614
[OLAD] human gut metagenome; human gut
632
558
-
Arg
CCT
[ENA]
¢þ
>WENV182987625
OLAD01001910
[OLAD] human gut metagenome; human gut
645
720
+
Thr
CGT
[ENA]
¢þ
>WENV182987584
OLAD01000446
[OLAD] human gut metagenome; human gut
674
750
+
Arg
CCG
[ENA]
¢þ
>WENV182987636
OLAD01003447
[OLAD] human gut metagenome; human gut
700
626
-
Thr
GGT
[ENA]
¢þ
>WENV182987578
OLAD01000271
[OLAD] human gut metagenome; human gut
701
610
-
Ser
GGA
[ENA]
¢þ
>WENV182987626
OLAD01002089
[OLAD] human gut metagenome; human gut
723
650
-
Ile2
CAT
[ENA]
¢þ
>WENV182987632
OLAD01002759
[OLAD] human gut metagenome; human gut
744
655
-
Ser
CGA
[ENA]
¢þ
>WENV182987635
OLAD01003406
[OLAD] human gut metagenome; human gut
793
866
+
Asn
GTT
[ENA]
¢þ
>WENV182987585
OLAD01000446
[OLAD] human gut metagenome; human gut
809
884
+
His
GTG
[ENA]
¢þ
>WENV182987583
OLAD01000414
[OLAD] human gut metagenome; human gut
829
904
+
Pro
TGG
[ENA]
¢þ
>WENV182987634
OLAD01003129
[OLAD] human gut metagenome; human gut
878
802
-
Asn
GTT
[ENA]
¢þ
>WENV182987586
OLAD01000446
[OLAD] human gut metagenome; human gut
905
991
+
Leu
CAG
[ENA]
¢þ
>WENV182987611
OLAD01001310
[OLAD] human gut metagenome; human gut
930
1014
+
Leu
CAA
[ENA]
¢þ
>WENV182987616
OLAD01001585
[OLAD] human gut metagenome; human gut
1000
1077
+
Pro
TGG
[ENA]
¢þ
>WENV182987631
OLAD01002725
[OLAD] human gut metagenome; human gut
1020
945
-
Trp
CCA
[ENA]
¢þ
>WENV182987587
OLAD01000446
[OLAD] human gut metagenome; human gut
1034
1110
+
Pro
TGG
[ENA]
¢þ
>WENV182987617
OLAD01001585
[OLAD] human gut metagenome; human gut
1083
1153
+
Gly
TCC
[ENA]
¢þ
>WENV182987628
OLAD01002287
[OLAD] human gut metagenome; human gut
1128
1055
-
Lys
CTT
[ENA]
¢þ
>WENV182987624
OLAD01001727
[OLAD] human gut metagenome; human gut
1154
1078
-
Ile
GAT
[ENA]
¢þ
>WENV182987540
OLAD01000031
[OLAD] human gut metagenome; human gut
1180
1252
+
Glu
TTC
[ENA]
¢þ
>WENV182987618
OLAD01001585
[OLAD] human gut metagenome; human gut
1192
1267
+
Arg
TCT
[ENA]
¢þ
>WENV182987601
OLAD01000837
[OLAD] human gut metagenome; human gut
1202
1275
+
Ala
TGC
[ENA]
¢þ
>WENV182987575
OLAD01000256
[OLAD] human gut metagenome; human gut
1203
1127
-
fMet
CAT
[ENA]
¢þ
>WENV182987623
OLAD01001727
[OLAD] human gut metagenome; human gut
1233
1158
-
Ala
TGC
[ENA]
¢þ
>WENV182987570
OLAD01000176
[OLAD] human gut metagenome; human gut
1269
1344
+
Thr
GGT
[ENA]
¢þ
>WENV182987619
OLAD01001585
[OLAD] human gut metagenome; human gut
1273
1348
+
His
GTG
[ENA]
¢þ
>WENV182987620
OLAD01001585
[OLAD] human gut metagenome; human gut
1401
1472
+
Gln
TTG
[ENA]
¢þ
>WENV182987599
OLAD01000629
[OLAD] human gut metagenome; human gut
1472
1397
-
Arg
CCT
[ENA]
¢þ
>WENV182987579
OLAD01000292
[OLAD] human gut metagenome; human gut
1523
1597
+
Ile
GAT
[ENA]
¢þ
>WENV182987598
OLAD01000629
[OLAD] human gut metagenome; human gut
1553
1476
-
Pro
TGG
[ENA]
¢þ
>WENV182987580
OLAD01000292
[OLAD] human gut metagenome; human gut
1614
1688
+
Ala
TGC
[ENA]
¢þ
>WENV182987600
OLAD01000830
[OLAD] human gut metagenome; human gut
1689
1774
+
Tyr
GTA
[ENA]
¢þ
>WENV182987602
OLAD01000838
[OLAD] human gut metagenome; human gut
1808
1884
+
Met
CAT
[ENA]
¢þ
>WENV182987603
OLAD01000838
[OLAD] human gut metagenome; human gut
1895
1979
+
Leu
TAG
[ENA]
¢þ
>WENV182987604
OLAD01000838
[OLAD] human gut metagenome; human gut
2003
2077
+
Gln
TTG
[ENA]
¢þ
>WENV182987582
OLAD01000394
[OLAD] human gut metagenome; human gut
2035
2129
+
SeC
TCA
[ENA]
¢þ
>WENV182987591
OLAD01000489
[OLAD] human gut metagenome; human gut
2096
2021
-
Thr
GGT
[ENA]
¢þ
>WENV182987594
OLAD01000612
[OLAD] human gut metagenome; human gut
2157
2232
+
Arg
TCT
[ENA]
¢þ
>WENV182987581
OLAD01000391
[OLAD] human gut metagenome; human gut
2169
2252
+
Leu
TAA
[ENA]
¢þ
>WENV182987590
OLAD01000489
[OLAD] human gut metagenome; human gut
2177
2103
-
Gly
TCC
[ENA]
¢þ
>WENV182987595
OLAD01000612
[OLAD] human gut metagenome; human gut
2239
2314
+
His
GTG
[ENA]
¢þ
>WENV182987589
OLAD01000489
[OLAD] human gut metagenome; human gut
2378
2294
-
Tyr
GTA
[ENA]
¢þ
>WENV182987588
OLAD01000489
[OLAD] human gut metagenome; human gut
2462
2387
-
Thr
TGT
[ENA]
¢þ
>WENV182987596
OLAD01000612
[OLAD] human gut metagenome; human gut
2515
2601
+
Leu
CAG
[ENA]
¢þ
>WENV182987577
OLAD01000266
[OLAD] human gut metagenome; human gut
2571
2646
+
Gly
CCC
[ENA]
¢þ
>WENV182987592
OLAD01000544
[OLAD] human gut metagenome; human gut
2645
2720
+
Phe
GAA
[ENA]
¢þ
>WENV182987593
OLAD01000544
[OLAD] human gut metagenome; human gut
2761
2836
+
Gly
GCC
[ENA]
¢þ
>WENV182987531
OLAD01000018
[OLAD] human gut metagenome; human gut
3003
2918
-
Ser
TGA
[ENA]
¢þ
>WENV182987573
OLAD01000176
[OLAD] human gut metagenome; human gut
3090
3015
-
Thr
GGT
[ENA]
¢þ
>WENV182987572
OLAD01000176
[OLAD] human gut metagenome; human gut
3170
3094
-
Asp
GTC
[ENA]
¢þ
>WENV182987571
OLAD01000176
[OLAD] human gut metagenome; human gut
3530
3455
-
Trp
CCA
[ENA]
¢þ
>WENV182987563
OLAD01000126
[OLAD] human gut metagenome; human gut
4374
4450
+
Met
CAT
[ENA]
¢þ
>WENV182987564
OLAD01000126
[OLAD] human gut metagenome; human gut
4542
4616
+
Glu
TTC
[ENA]
¢þ
>WENV182987561
OLAD01000103
[OLAD] human gut metagenome; human gut
4615
4700
+
Ser
TGA
[ENA]
¢þ
>WENV182987576
OLAD01000264
[OLAD] human gut metagenome; human gut
4706
4631
-
Thr
CGT
[ENA]
¢þ
>WENV182987568
OLAD01000149
[OLAD] human gut metagenome; human gut
5887
5812
-
Pro
CGG
[ENA]
¢þ
>WENV182987567
OLAD01000149
[OLAD] human gut metagenome; human gut
5994
5921
-
Gln
CTG
[ENA]
¢þ
>WENV182987574
OLAD01000185
[OLAD] human gut metagenome; human gut
6743
6817
+
Asp
GTC
[ENA]
¢þ
>WENV182987565
OLAD01000135
[OLAD] human gut metagenome; human gut
7350
7426
+
Arg
ACG
[ENA]
¢þ
>WENV182987550
OLAD01000040
[OLAD] human gut metagenome; human gut
8043
7972
-
Gln
CTG
[ENA]
¢þ
>WENV182987552
OLAD01000058
[OLAD] human gut metagenome; human gut
8354
8442
+
Ser
GGA
[ENA]
¢þ
>WENV182987569
OLAD01000155
[OLAD] human gut metagenome; human gut
8457
8531
+
Arg
TCT
[ENA]
¢þ
>WENV182987566
OLAD01000147
[OLAD] human gut metagenome; human gut
8942
8866
-
Val
TAC
[ENA]
¢þ
>WENV182987557
OLAD01000087
[OLAD] human gut metagenome; human gut
10334
10259
-
His
GTG
[ENA]
¢þ
>WENV182987556
OLAD01000075
[OLAD] human gut metagenome; human gut
12160
12085
-
Phe
GAA
[ENA]
¢þ
>WENV182987554
OLAD01000067
[OLAD] human gut metagenome; human gut
13037
12947
-
Ser
CGA
[ENA]
¢þ
>WENV182987553
OLAD01000060
[OLAD] human gut metagenome; human gut
14227
14139
-
Ser
GGA
[ENA]
¢þ
>WENV182987558
OLAD01000092
[OLAD] human gut metagenome; human gut
14893
14966
+
Gly
CCC
[ENA]
¢þ
>WENV182987530
OLAD01000018
[OLAD] human gut metagenome; human gut
16625
16698
+
Trp
CCA
[ENA]
¢þ
>WENV182987521
OLAD01000004
[OLAD] human gut metagenome; human gut
17256
17328
+
Arg
CCG
[ENA]
¢þ
>WENV182987526
OLAD01000014
[OLAD] human gut metagenome; human gut
21204
21278
+
Ile2
CAT
[ENA]
¢þ
>WENV182987555
OLAD01000070
[OLAD] human gut metagenome; human gut
23242
23168
-
Glu
CTC
[ENA]
¢þ
>WENV182987547
OLAD01000035
[OLAD] human gut metagenome; human gut
25283
25209
-
Asn
GTT
[ENA]
¢þ
>WENV182987546
OLAD01000035
[OLAD] human gut metagenome; human gut
25382
25308
-
Asn
GTT
[ENA]
¢þ
>WENV182987539
OLAD01000030
[OLAD] human gut metagenome; human gut
31245
31171
-
Met
CAT
[ENA]
¢þ
>WENV182987538
OLAD01000030
[OLAD] human gut metagenome; human gut
31381
31307
-
Met
CAT
[ENA]
¢þ
>WENV182987533
OLAD01000020
[OLAD] human gut metagenome; human gut
36913
36986
+
Lys
CTT
[ENA]
¢þ
>WENV182987529
OLAD01000016
[OLAD] human gut metagenome; human gut
36998
36915
-
Tyr
GTA
[ENA]
¢þ
>WENV182987534
OLAD01000020
[OLAD] human gut metagenome; human gut
37010
37083
+
Lys
CTT
[ENA]
¢þ
>WENV182987548
OLAD01000037
[OLAD] human gut metagenome; human gut
37023
37097
+
Ala
GGC
[ENA]
¢þ
>WENV182987535
OLAD01000020
[OLAD] human gut metagenome; human gut
37103
37176
+
Lys
CTT
[ENA]
¢þ
>WENV182987542
OLAD01000035
[OLAD] human gut metagenome; human gut
38489
38563
+
Thr
TGT
[ENA]
¢þ
>WENV182987543
OLAD01000035
[OLAD] human gut metagenome; human gut
38606
38689
+
Tyr
GTA
[ENA]
¢þ
>WENV182987544
OLAD01000035
[OLAD] human gut metagenome; human gut
38807
38879
+
Thr
GGT
[ENA]
¢þ
>WENV182987545
OLAD01000035
[OLAD] human gut metagenome; human gut
40172
40245
+
Trp
CCA
[ENA]
¢þ
>WENV182987537
OLAD01000028
[OLAD] human gut metagenome; human gut
42180
42255
+
Lys
TTT
[ENA]
¢þ
>WENV182987536
OLAD01000025
[OLAD] human gut metagenome; human gut
42733
42659
-
Glu
TTC
[ENA]
¢þ
>WENV182987549
OLAD01000040
[OLAD] human gut metagenome; human gut
42868
42943
+
Pro
GGG
[ENA]
¢þ
>WENV182987528
OLAD01000016
[OLAD] human gut metagenome; human gut
51654
51728
+
Thr
TGT
[ENA]
¢þ
>WENV182987541
OLAD01000032
[OLAD] human gut metagenome; human gut
54838
54912
+
Cys
GCA
[ENA]
¢þ
>WENV182987525
OLAD01000010
[OLAD] human gut metagenome; human gut
60686
60614
-
Arg
CCT
[ENA]
¢þ
>WENV182987527
OLAD01000015
[OLAD] human gut metagenome; human gut
70171
70253
+
Leu
TAG
[ENA]
¢þ
>WENV182987532
OLAD01000019
[OLAD] human gut metagenome; human gut
72090
72164
+
Thr
TGT
[ENA]
¢þ
>WENV182987522
OLAD01000007
[OLAD] human gut metagenome; human gut
87462
87533
+
Gln
TTG
[ENA]
¢þ
>WENV182987524
OLAD01000009
[OLAD] human gut metagenome; human gut
100590
100515
-
Phe
GAA
[ENA]
¢þ
>WENV182987523
OLAD01000009
[OLAD] human gut metagenome; human gut
100771
100844
+
Pro
CGG
[ENA]
¢þ
>WENV182987520
OLAD01000003
[OLAD] human gut metagenome; human gut
144905
144832
-
Thr
CGT
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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