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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLBM] human gut metagenome; human gut
HIT:
79 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182996690
OLBM01001460
[OLBM] human gut metagenome; human gut
9
82
+
Ile2
CAT
[ENA]
¢þ
>WENV182996700
OLBM01002113
[OLBM] human gut metagenome; human gut
27
114
+
Ser
TGA
[ENA]
¢þ
>WENV182996687
OLBM01001264
[OLBM] human gut metagenome; human gut
48
138
+
Ser
GCT
[ENA]
¢þ
>WENV182996694
OLBM01001726
[OLBM] human gut metagenome; human gut
91
166
+
Val
TAC
[ENA]
¢þ
>WENV182996680
OLBM01000510
[OLBM] human gut metagenome; human gut
96
182
+
Leu
CAG
[ENA]
¢þ
>WENV182996701
OLBM01002632
[OLBM] human gut metagenome; human gut
98
170
+
Thr
TGT
[ENA]
¢þ
>WENV182996668
OLBM01000221
[OLBM] human gut metagenome; human gut
153
79
-
Asn
GTT
[ENA]
¢þ
>WENV182996657
OLBM01000179
[OLBM] human gut metagenome; human gut
155
71
-
Leu
GAG
[ENA]
¢þ
>WENV182996691
OLBM01001474
[OLBM] human gut metagenome; human gut
167
93
-
Thr
GGT
[ENA]
¢þ
>WENV182996695
OLBM01001726
[OLBM] human gut metagenome; human gut
169
245
+
Asp
GTC
[ENA]
¢þ
>WENV182996702
OLBM01002632
[OLBM] human gut metagenome; human gut
195
270
+
fMet
CAT
[ENA]
¢þ
>WENV182996705
OLBM01002717
[OLBM] human gut metagenome; human gut
221
135
-
Leu
CAG
[ENA]
¢þ
>WENV182996656
OLBM01000179
[OLBM] human gut metagenome; human gut
259
178
-
Leu
CAG
[ENA]
¢þ
>WENV182996696
OLBM01001726
[OLBM] human gut metagenome; human gut
277
353
+
Phe
GAA
[ENA]
¢þ
>WENV182996703
OLBM01002632
[OLBM] human gut metagenome; human gut
290
363
+
Phe
GAA
[ENA]
¢þ
>WENV182996692
OLBM01001658
[OLBM] human gut metagenome; human gut
335
409
+
Glu
TTC
[ENA]
¢þ
>WENV182996698
OLBM01002058
[OLBM] human gut metagenome; human gut
336
412
+
Met
CAT
[ENA]
¢þ
>WENV182996655
OLBM01000179
[OLBM] human gut metagenome; human gut
379
306
-
Gly
GCC
[ENA]
¢þ
>WENV182996704
OLBM01002632
[OLBM] human gut metagenome; human gut
380
454
+
Lys
TTT
[ENA]
¢þ
>WENV182996627
OLBM01000001
[OLBM] human gut metagenome; human gut
405
478
+
Pro
CGG
[ENA]
¢þ
>WENV182996693
OLBM01001658
[OLBM] human gut metagenome; human gut
415
490
+
Val
TAC
[ENA]
¢þ
>WENV182996689
OLBM01001350
[OLBM] human gut metagenome; human gut
478
403
-
Val
GAC
[ENA]
¢þ
>WENV182996674
OLBM01000361
[OLBM] human gut metagenome; human gut
501
416
-
Ser
TGA
[ENA]
¢þ
>WENV182996697
OLBM01001726
[OLBM] human gut metagenome; human gut
501
574
+
Cys
GCA
[ENA]
¢þ
>WENV182996699
OLBM01002058
[OLBM] human gut metagenome; human gut
504
575
+
Glu
TTC
[ENA]
¢þ
>WENV182996688
OLBM01001267
[OLBM] human gut metagenome; human gut
644
718
+
Cys
GCA
[ENA]
¢þ
>WENV182996646
OLBM01000129
[OLBM] human gut metagenome; human gut
701
628
-
Phe
GAA
[ENA]
¢þ
>WENV182996681
OLBM01000614
[OLBM] human gut metagenome; human gut
725
798
+
Ile
GAT
[ENA]
¢þ
>WENV182996686
OLBM01000815
[OLBM] human gut metagenome; human gut
796
726
-
Cys
GCA
[ENA]
¢þ
>WENV182996638
OLBM01000037
[OLBM] human gut metagenome; human gut
806
894
+
Ser
GGA
[ENA]
¢þ
>WENV182996685
OLBM01000815
[OLBM] human gut metagenome; human gut
909
837
-
Glu
TTC
[ENA]
¢þ
>WENV182996684
OLBM01000815
[OLBM] human gut metagenome; human gut
987
915
-
Asn
GTT
[ENA]
¢þ
>WENV182996682
OLBM01000652
[OLBM] human gut metagenome; human gut
1068
994
-
Arg
TCT
[ENA]
¢þ
>WENV182996654
OLBM01000173
[OLBM] human gut metagenome; human gut
1297
1371
+
Thr
TGT
[ENA]
¢þ
>WENV182996683
OLBM01000777
[OLBM] human gut metagenome; human gut
1488
1412
-
Ile
GAT
[ENA]
¢þ
>WENV182996658
OLBM01000189
[OLBM] human gut metagenome; human gut
1502
1427
-
Pro
TGG
[ENA]
¢þ
>WENV182996677
OLBM01000477
[OLBM] human gut metagenome; human gut
1572
1498
-
Ala
TGC
[ENA]
¢þ
>WENV182996648
OLBM01000143
[OLBM] human gut metagenome; human gut
1585
1660
+
Pro
GGG
[ENA]
¢þ
>WENV182996676
OLBM01000477
[OLBM] human gut metagenome; human gut
1663
1589
-
Ile
GAT
[ENA]
¢þ
>WENV182996673
OLBM01000348
[OLBM] human gut metagenome; human gut
1810
1736
-
Ala
GGC
[ENA]
¢þ
>WENV182996675
OLBM01000445
[OLBM] human gut metagenome; human gut
1965
2040
+
Gly
CCC
[ENA]
¢þ
>WENV182996650
OLBM01000158
[OLBM] human gut metagenome; human gut
2900
2827
-
Lys
CTT
[ENA]
¢þ
>WENV182996679
OLBM01000498
[OLBM] human gut metagenome; human gut
2941
3016
+
His
GTG
[ENA]
¢þ
>WENV182996678
OLBM01000494
[OLBM] human gut metagenome; human gut
3005
3079
+
Met
CAT
[ENA]
¢þ
>WENV182996659
OLBM01000213
[OLBM] human gut metagenome; human gut
3441
3526
+
Ser
GCT
[ENA]
¢þ
>WENV182996660
OLBM01000213
[OLBM] human gut metagenome; human gut
3532
3607
+
Arg
ACG
[ENA]
¢þ
>WENV182996661
OLBM01000213
[OLBM] human gut metagenome; human gut
3614
3700
+
Ser
TGA
[ENA]
¢þ
>WENV182996662
OLBM01000213
[OLBM] human gut metagenome; human gut
3706
3777
+
Gln
CTG
[ENA]
¢þ
>WENV182996663
OLBM01000213
[OLBM] human gut metagenome; human gut
3786
3859
+
Phe
GAA
[ENA]
¢þ
>WENV182996664
OLBM01000213
[OLBM] human gut metagenome; human gut
3977
4048
+
Gln
TTG
[ENA]
¢þ
>WENV182996665
OLBM01000213
[OLBM] human gut metagenome; human gut
4061
4132
+
Arg
TCG
[ENA]
¢þ
>WENV182996672
OLBM01000322
[OLBM] human gut metagenome; human gut
4121
4037
-
Leu
CAA
[ENA]
¢þ
>WENV182996666
OLBM01000213
[OLBM] human gut metagenome; human gut
4138
4211
+
His
GTG
[ENA]
¢þ
>WENV182996669
OLBM01000249
[OLBM] human gut metagenome; human gut
4139
4212
+
Thr
CGT
[ENA]
¢þ
>WENV182996667
OLBM01000213
[OLBM] human gut metagenome; human gut
4216
4290
+
Thr
TGT
[ENA]
¢þ
>WENV182996671
OLBM01000287
[OLBM] human gut metagenome; human gut
4726
4653
-
Trp
CCA
[ENA]
¢þ
>WENV182996643
OLBM01000057
[OLBM] human gut metagenome; human gut
5018
4945
-
Trp
CCA
[ENA]
¢þ
>WENV182996670
OLBM01000287
[OLBM] human gut metagenome; human gut
6091
6019
-
Thr
GGT
[ENA]
¢þ
>WENV182996649
OLBM01000152
[OLBM] human gut metagenome; human gut
6534
6622
+
Ser
GGA
[ENA]
¢þ
>WENV182996647
OLBM01000138
[OLBM] human gut metagenome; human gut
7812
7886
+
Thr
TGT
[ENA]
¢þ
>WENV182996641
OLBM01000054
[OLBM] human gut metagenome; human gut
8233
8157
-
Val
TAC
[ENA]
¢þ
>WENV182996653
OLBM01000169
[OLBM] human gut metagenome; human gut
8479
8407
-
Glu
TTC
[ENA]
¢þ
>WENV182996629
OLBM01000013
[OLBM] human gut metagenome; human gut
8566
8640
+
Asp
GTC
[ENA]
¢þ
>WENV182996652
OLBM01000167
[OLBM] human gut metagenome; human gut
8628
8554
-
Glu
CTC
[ENA]
¢þ
>WENV182996651
OLBM01000167
[OLBM] human gut metagenome; human gut
9070
8983
-
Ser
GCT
[ENA]
¢þ
>WENV182996645
OLBM01000115
[OLBM] human gut metagenome; human gut
9648
9565
-
Tyr
GTA
[ENA]
¢þ
>WENV182996640
OLBM01000042
[OLBM] human gut metagenome; human gut
15251
15323
+
Arg
CCG
[ENA]
¢þ
>WENV182996644
OLBM01000066
[OLBM] human gut metagenome; human gut
16420
16491
+
Gln
TTG
[ENA]
¢þ
>WENV182996628
OLBM01000012
[OLBM] human gut metagenome; human gut
16691
16765
+
Ile2
CAT
[ENA]
¢þ
>WENV182996642
OLBM01000057
[OLBM] human gut metagenome; human gut
18639
18724
+
Ser
TGA
[ENA]
¢þ
>WENV182996637
OLBM01000030
[OLBM] human gut metagenome; human gut
19436
19509
+
fMet
CAT
[ENA]
¢þ
>WENV182996639
OLBM01000038
[OLBM] human gut metagenome; human gut
19917
19992
+
Lys
TTT
[ENA]
¢þ
>WENV182996630
OLBM01000013
[OLBM] human gut metagenome; human gut
27081
27154
+
fMet
CAT
[ENA]
¢þ
>WENV182996631
OLBM01000013
[OLBM] human gut metagenome; human gut
27372
27445
+
Asn
GTT
[ENA]
¢þ
>WENV182996632
OLBM01000013
[OLBM] human gut metagenome; human gut
27452
27525
+
Trp
CCA
[ENA]
¢þ
>WENV182996633
OLBM01000013
[OLBM] human gut metagenome; human gut
27530
27601
+
Gln
TTG
[ENA]
¢þ
>WENV182996634
OLBM01000013
[OLBM] human gut metagenome; human gut
27606
27678
+
Glu
TTC
[ENA]
¢þ
>WENV182996635
OLBM01000013
[OLBM] human gut metagenome; human gut
27842
27924
+
Tyr
GTA
[ENA]
¢þ
>WENV182996636
OLBM01000014
[OLBM] human gut metagenome; human gut
29075
29147
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK