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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OLBZ] human gut metagenome; human gut
HIT:
151 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182999617
OLBZ01004834
[OLBZ] human gut metagenome; human gut
1
74
+
Asp
GTC
[ENA]
¢þ
>WENV182999634
OLBZ01005595
[OLBZ] human gut metagenome; human gut
40
126
+
Leu
CAG
[ENA]
¢þ
>WENV182999595
OLBZ01001486
[OLBZ] human gut metagenome; human gut
71
146
+
Ala
TGC
[ENA]
¢þ
>WENV182999574
OLBZ01000378
[OLBZ] human gut metagenome; human gut
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV182999618
OLBZ01004834
[OLBZ] human gut metagenome; human gut
79
153
+
Val
TAC
[ENA]
¢þ
>WENV182999624
OLBZ01004843
[OLBZ] human gut metagenome; human gut
82
156
+
Gly
TCC
[ENA]
¢þ
>WENV182999615
OLBZ01003707
[OLBZ] human gut metagenome; human gut
83
156
+
Pro
CGG
[ENA]
¢þ
>WENV182999637
OLBZ01006437
[OLBZ] human gut metagenome; human gut
111
187
+
Pro
CGG
[ENA]
¢þ
>WENV182999636
OLBZ01006096
[OLBZ] human gut metagenome; human gut
115
39
-
Asp
GTC
[ENA]
¢þ
>WENV182999625
OLBZ01004859
[OLBZ] human gut metagenome; human gut
131
206
+
Ala
TGC
[ENA]
¢þ
>WENV182999600
OLBZ01001879
[OLBZ] human gut metagenome; human gut
143
70
-
Gly
CCC
[ENA]
¢þ
>WENV182999576
OLBZ01000441
[OLBZ] human gut metagenome; human gut
143
218
+
Gly
GCC
[ENA]
¢þ
>WENV182999596
OLBZ01001486
[OLBZ] human gut metagenome; human gut
150
226
+
Ile
GAT
[ENA]
¢þ
>WENV182999610
OLBZ01003344
[OLBZ] human gut metagenome; human gut
155
80
-
Phe
GAA
[ENA]
¢þ
>WENV182999647
OLBZ01010942
[OLBZ] human gut metagenome; human gut
162
237
+
Met
CAT
[ENA]
¢þ
>WENV182999569
OLBZ01000315
[OLBZ] human gut metagenome; human gut
163
87
-
fMet
CAT
[ENA]
¢þ
>WENV182999619
OLBZ01004834
[OLBZ] human gut metagenome; human gut
176
248
+
Thr
TGT
[ENA]
¢þ
>WENV182999639
OLBZ01006654
[OLBZ] human gut metagenome; human gut
181
105
-
Ile
GAT
[ENA]
¢þ
>WENV182999552
OLBZ01000134
[OLBZ] human gut metagenome; human gut
200
112
-
Ser
GGA
[ENA]
¢þ
>WENV182999632
OLBZ01004917
[OLBZ] human gut metagenome; human gut
209
136
-
Lys
TTT
[ENA]
¢þ
>WENV182999626
OLBZ01004859
[OLBZ] human gut metagenome; human gut
211
287
+
Ile
GAT
[ENA]
¢þ
>WENV182999503
OLBZ01000002
[OLBZ] human gut metagenome; human gut
213
129
-
Leu
CAA
[ENA]
¢þ
>WENV182999577
OLBZ01000441
[OLBZ] human gut metagenome; human gut
248
322
+
Cys
GCA
[ENA]
¢þ
>WENV182999614
OLBZ01003662
[OLBZ] human gut metagenome; human gut
251
326
+
Glu
TTC
[ENA]
¢þ
>WENV182999620
OLBZ01004834
[OLBZ] human gut metagenome; human gut
252
327
+
Ile2
CAT
[ENA]
¢þ
>WENV182999635
OLBZ01006090
[OLBZ] human gut metagenome; human gut
255
329
+
Ala
GGC
[ENA]
¢þ
>WENV182999638
OLBZ01006654
[OLBZ] human gut metagenome; human gut
261
186
-
Ala
TGC
[ENA]
¢þ
>WENV182999631
OLBZ01004917
[OLBZ] human gut metagenome; human gut
290
215
-
Gln
TTG
[ENA]
¢þ
>WENV182999520
OLBZ01000018
[OLBZ] human gut metagenome; human gut
291
206
-
Leu
TAA
[ENA]
¢þ
>WENV182999573
OLBZ01000378
[OLBZ] human gut metagenome; human gut
329
254
-
Trp
CCA
[ENA]
¢þ
>WENV182999621
OLBZ01004834
[OLBZ] human gut metagenome; human gut
332
406
+
Asp
GTC
[ENA]
¢þ
>WENV182999641
OLBZ01007340
[OLBZ] human gut metagenome; human gut
367
296
-
Glu
CTC
[ENA]
¢þ
>WENV182999630
OLBZ01004917
[OLBZ] human gut metagenome; human gut
368
293
-
His
GTG
[ENA]
¢þ
>WENV182999613
OLBZ01003647
[OLBZ] human gut metagenome; human gut
371
297
-
Glu
CTC
[ENA]
¢þ
>WENV182999519
OLBZ01000018
[OLBZ] human gut metagenome; human gut
380
307
-
Gly
GCC
[ENA]
¢þ
>WENV182999646
OLBZ01010768
[OLBZ] human gut metagenome; human gut
391
464
+
Lys
CTT
[ENA]
¢þ
>WENV182999622
OLBZ01004834
[OLBZ] human gut metagenome; human gut
442
516
+
Val
TAC
[ENA]
¢þ
>WENV182999629
OLBZ01004917
[OLBZ] human gut metagenome; human gut
446
372
-
Arg
TCT
[ENA]
¢þ
>WENV182999640
OLBZ01007340
[OLBZ] human gut metagenome; human gut
447
373
-
Pro
CGG
[ENA]
¢þ
>WENV182999643
OLBZ01008020
[OLBZ] human gut metagenome; human gut
450
376
-
Ala
TGC
[ENA]
¢þ
>WENV182999645
OLBZ01009455
[OLBZ] human gut metagenome; human gut
451
369
-
Leu
TAG
[ENA]
¢þ
>WENV182999602
OLBZ01002017
[OLBZ] human gut metagenome; human gut
468
542
+
Ile
GAT
[ENA]
¢þ
>WENV182999644
OLBZ01008592
[OLBZ] human gut metagenome; human gut
493
568
+
Lys
CTT
[ENA]
¢þ
>WENV182999628
OLBZ01004917
[OLBZ] human gut metagenome; human gut
519
449
-
Gly
TCC
[ENA]
¢þ
>WENV182999623
OLBZ01004834
[OLBZ] human gut metagenome; human gut
532
619
+
Leu
TAA
[ENA]
¢þ
>WENV182999642
OLBZ01008020
[OLBZ] human gut metagenome; human gut
535
461
-
Ile
GAT
[ENA]
¢þ
>WENV182999603
OLBZ01002017
[OLBZ] human gut metagenome; human gut
557
631
+
Ala
TGC
[ENA]
¢þ
>WENV182999627
OLBZ01004917
[OLBZ] human gut metagenome; human gut
602
528
-
Pro
TGG
[ENA]
¢þ
>WENV182999606
OLBZ01002670
[OLBZ] human gut metagenome; human gut
630
551
-
Leu
CAA
[ENA]
¢þ
>WENV182999561
OLBZ01000220
[OLBZ] human gut metagenome; human gut
645
721
+
Arg
CCG
[ENA]
¢þ
>WENV182999612
OLBZ01003495
[OLBZ] human gut metagenome; human gut
707
633
-
Ala
TGC
[ENA]
¢þ
>WENV182999597
OLBZ01001642
[OLBZ] human gut metagenome; human gut
724
800
+
Val
CAC
[ENA]
¢þ
>WENV182999605
OLBZ01002449
[OLBZ] human gut metagenome; human gut
731
653
-
His
GTG
[ENA]
¢þ
>WENV182999633
OLBZ01005089
[OLBZ] human gut metagenome; human gut
758
685
-
Ala
TGC
[ENA]
¢þ
>WENV182999611
OLBZ01003495
[OLBZ] human gut metagenome; human gut
812
736
-
Ile
GAT
[ENA]
¢þ
>WENV182999616
OLBZ01004421
[OLBZ] human gut metagenome; human gut
867
793
-
Thr
TGT
[ENA]
¢þ
>WENV182999587
OLBZ01001041
[OLBZ] human gut metagenome; human gut
917
826
-
Ser
GGA
[ENA]
¢þ
>WENV182999591
OLBZ01001325
[OLBZ] human gut metagenome; human gut
965
892
-
Trp
CCA
[ENA]
¢þ
>WENV182999609
OLBZ01003134
[OLBZ] human gut metagenome; human gut
977
892
-
Ser
TGA
[ENA]
¢þ
>WENV182999607
OLBZ01002716
[OLBZ] human gut metagenome; human gut
1010
933
-
Arg
CCT
[ENA]
¢þ
>WENV182999608
OLBZ01002915
[OLBZ] human gut metagenome; human gut
1110
1184
+
His
GTG
[ENA]
¢þ
>WENV182999599
OLBZ01001848
[OLBZ] human gut metagenome; human gut
1128
1054
-
Ile2
CAT
[ENA]
¢þ
>WENV182999586
OLBZ01000954
[OLBZ] human gut metagenome; human gut
1246
1158
-
Ser
GGA
[ENA]
¢þ
>WENV182999575
OLBZ01000404
[OLBZ] human gut metagenome; human gut
1289
1365
+
Arg
CCT
[ENA]
¢þ
>WENV182999601
OLBZ01001919
[OLBZ] human gut metagenome; human gut
1298
1224
-
Asn
GTT
[ENA]
¢þ
>WENV182999604
OLBZ01002436
[OLBZ] human gut metagenome; human gut
1412
1340
-
Cys
GCA
[ENA]
¢þ
>WENV182999524
OLBZ01000022
[OLBZ] human gut metagenome; human gut
1436
1361
-
Lys
TTT
[ENA]
¢þ
>WENV182999594
OLBZ01001433
[OLBZ] human gut metagenome; human gut
1666
1749
+
Tyr
GTA
[ENA]
¢þ
>WENV182999598
OLBZ01001790
[OLBZ] human gut metagenome; human gut
1839
1765
-
Pro
GGG
[ENA]
¢þ
>WENV182999559
OLBZ01000180
[OLBZ] human gut metagenome; human gut
1860
1784
-
Arg
ACG
[ENA]
¢þ
>WENV182999584
OLBZ01000809
[OLBZ] human gut metagenome; human gut
1943
1870
-
Gln
CTG
[ENA]
¢þ
>WENV182999570
OLBZ01000327
[OLBZ] human gut metagenome; human gut
2048
1973
-
Ile2
CAT
[ENA]
¢þ
>WENV182999592
OLBZ01001353
[OLBZ] human gut metagenome; human gut
2054
1979
-
Gly
CCC
[ENA]
¢þ
>WENV182999566
OLBZ01000277
[OLBZ] human gut metagenome; human gut
2090
2015
-
Thr
GGT
[ENA]
¢þ
>WENV182999593
OLBZ01001386
[OLBZ] human gut metagenome; human gut
2182
2107
-
Arg
ACG
[ENA]
¢þ
>WENV182999514
OLBZ01000011
[OLBZ] human gut metagenome; human gut
2278
2351
+
Lys
TTT
[ENA]
¢þ
>WENV182999590
OLBZ01001325
[OLBZ] human gut metagenome; human gut
2331
2259
-
Thr
GGT
[ENA]
¢þ
>WENV182999588
OLBZ01001094
[OLBZ] human gut metagenome; human gut
2521
2602
+
Leu
TAG
[ENA]
¢þ
>WENV182999589
OLBZ01001209
[OLBZ] human gut metagenome; human gut
2565
2492
-
Lys
TTT
[ENA]
¢þ
>WENV182999585
OLBZ01000902
[OLBZ] human gut metagenome; human gut
2567
2492
-
Pro
TGG
[ENA]
¢þ
>WENV182999583
OLBZ01000767
[OLBZ] human gut metagenome; human gut
2642
2713
+
Gln
TTG
[ENA]
¢þ
>WENV182999582
OLBZ01000670
[OLBZ] human gut metagenome; human gut
3539
3456
-
Leu
GAG
[ENA]
¢þ
>WENV182999580
OLBZ01000531
[OLBZ] human gut metagenome; human gut
3687
3763
+
Met
CAT
[ENA]
¢þ
>WENV182999571
OLBZ01000362
[OLBZ] human gut metagenome; human gut
3832
3916
+
Leu
TAG
[ENA]
¢þ
>WENV182999581
OLBZ01000531
[OLBZ] human gut metagenome; human gut
3855
3926
+
Glu
TTC
[ENA]
¢þ
>WENV182999556
OLBZ01000156
[OLBZ] human gut metagenome; human gut
4561
4635
+
Thr
TGT
[ENA]
¢þ
>WENV182999579
OLBZ01000455
[OLBZ] human gut metagenome; human gut
4750
4825
+
Val
GAC
[ENA]
¢þ
>WENV182999568
OLBZ01000302
[OLBZ] human gut metagenome; human gut
4882
4954
+
Glu
TTC
[ENA]
¢þ
>WENV182999567
OLBZ01000279
[OLBZ] human gut metagenome; human gut
5155
5082
-
Lys
TTT
[ENA]
¢þ
>WENV182999578
OLBZ01000441
[OLBZ] human gut metagenome; human gut
5167
5252
+
Tyr
GTA
[ENA]
¢þ
>WENV182999572
OLBZ01000377
[OLBZ] human gut metagenome; human gut
5541
5615
+
Met
CAT
[ENA]
¢þ
>WENV182999560
OLBZ01000186
[OLBZ] human gut metagenome; human gut
5951
6025
+
Asp
GTC
[ENA]
¢þ
>WENV182999563
OLBZ01000238
[OLBZ] human gut metagenome; human gut
6021
5945
-
His
GTG
[ENA]
¢þ
>WENV182999562
OLBZ01000238
[OLBZ] human gut metagenome; human gut
6104
6029
-
Arg
TCT
[ENA]
¢þ
>WENV182999557
OLBZ01000160
[OLBZ] human gut metagenome; human gut
7467
7557
+
Ser
CGA
[ENA]
¢þ
>WENV182999564
OLBZ01000247
[OLBZ] human gut metagenome; human gut
8619
8706
+
Ser
TGA
[ENA]
¢þ
>WENV182999565
OLBZ01000247
[OLBZ] human gut metagenome; human gut
8739
8832
+
Ser
GCT
[ENA]
¢þ
>WENV182999554
OLBZ01000146
[OLBZ] human gut metagenome; human gut
9002
9085
+
Tyr
GTA
[ENA]
¢þ
>WENV182999547
OLBZ01000089
[OLBZ] human gut metagenome; human gut
10938
10865
-
Lys
CTT
[ENA]
¢þ
>WENV182999558
OLBZ01000173
[OLBZ] human gut metagenome; human gut
12785
12858
+
Thr
CGT
[ENA]
¢þ
>WENV182999525
OLBZ01000024
[OLBZ] human gut metagenome; human gut
13164
13238
+
Asn
GTT
[ENA]
¢þ
>WENV182999526
OLBZ01000024
[OLBZ] human gut metagenome; human gut
13262
13336
+
Asn
GTT
[ENA]
¢þ
>WENV182999532
OLBZ01000035
[OLBZ] human gut metagenome; human gut
16147
16065
-
Leu
TAG
[ENA]
¢þ
>WENV182999555
OLBZ01000154
[OLBZ] human gut metagenome; human gut
17877
17948
+
Gln
CTG
[ENA]
¢þ
>WENV182999533
OLBZ01000036
[OLBZ] human gut metagenome; human gut
18854
18781
-
fMet
CAT
[ENA]
¢þ
>WENV182999553
OLBZ01000135
[OLBZ] human gut metagenome; human gut
20424
20509
+
Ser
TGA
[ENA]
¢þ
>WENV182999521
OLBZ01000020
[OLBZ] human gut metagenome; human gut
20448
20522
+
Glu
TTC
[ENA]
¢þ
>WENV182999540
OLBZ01000061
[OLBZ] human gut metagenome; human gut
20859
20933
+
Arg
TCT
[ENA]
¢þ
>WENV182999529
OLBZ01000028
[OLBZ] human gut metagenome; human gut
21240
21152
-
Ser
GGA
[ENA]
¢þ
>WENV182999548
OLBZ01000115
[OLBZ] human gut metagenome; human gut
21728
21802
+
Thr
TGT
[ENA]
¢þ
>WENV182999549
OLBZ01000115
[OLBZ] human gut metagenome; human gut
21872
21955
+
Tyr
GTA
[ENA]
¢þ
>WENV182999550
OLBZ01000115
[OLBZ] human gut metagenome; human gut
21971
22043
+
Thr
GGT
[ENA]
¢þ
>WENV182999551
OLBZ01000115
[OLBZ] human gut metagenome; human gut
23331
23404
+
Trp
CCA
[ENA]
¢þ
>WENV182999537
OLBZ01000046
[OLBZ] human gut metagenome; human gut
25524
25451
-
Lys
CTT
[ENA]
¢þ
>WENV182999536
OLBZ01000046
[OLBZ] human gut metagenome; human gut
25618
25545
-
Lys
CTT
[ENA]
¢þ
>WENV182999535
OLBZ01000046
[OLBZ] human gut metagenome; human gut
25716
25643
-
Lys
CTT
[ENA]
¢þ
>WENV182999538
OLBZ01000051
[OLBZ] human gut metagenome; human gut
26312
26385
+
Trp
CCA
[ENA]
¢þ
>WENV182999546
OLBZ01000081
[OLBZ] human gut metagenome; human gut
29612
29686
+
Ala
GGC
[ENA]
¢þ
>WENV182999542
OLBZ01000074
[OLBZ] human gut metagenome; human gut
29871
29945
+
Ala
GGC
[ENA]
¢þ
>WENV182999543
OLBZ01000075
[OLBZ] human gut metagenome; human gut
31327
31414
+
Ser
GCT
[ENA]
¢þ
>WENV182999544
OLBZ01000075
[OLBZ] human gut metagenome; human gut
31468
31540
+
Glu
CTC
[ENA]
¢þ
>WENV182999545
OLBZ01000075
[OLBZ] human gut metagenome; human gut
31556
31629
+
Lys
CTT
[ENA]
¢þ
>WENV182999516
OLBZ01000013
[OLBZ] human gut metagenome; human gut
38963
39037
+
Ile2
CAT
[ENA]
¢þ
>WENV182999541
OLBZ01000065
[OLBZ] human gut metagenome; human gut
40516
40444
-
Cys
GCA
[ENA]
¢þ
>WENV182999530
OLBZ01000030
[OLBZ] human gut metagenome; human gut
44976
44902
-
Arg
TCT
[ENA]
¢þ
>WENV182999528
OLBZ01000028
[OLBZ] human gut metagenome; human gut
45584
45513
-
Gln
CTG
[ENA]
¢þ
>WENV182999506
OLBZ01000003
[OLBZ] human gut metagenome; human gut
49937
49852
-
Leu
TAA
[ENA]
¢þ
>WENV182999505
OLBZ01000003
[OLBZ] human gut metagenome; human gut
50026
49953
-
Gly
GCC
[ENA]
¢þ
>WENV182999539
OLBZ01000060
[OLBZ] human gut metagenome; human gut
54668
54593
-
Pro
TGG
[ENA]
¢þ
>WENV182999534
OLBZ01000038
[OLBZ] human gut metagenome; human gut
55010
54937
-
Gly
CCC
[ENA]
¢þ
>WENV182999501
OLBZ01000002
[OLBZ] human gut metagenome; human gut
55168
55240
+
Glu
TTC
[ENA]
¢þ
>WENV182999531
OLBZ01000034
[OLBZ] human gut metagenome; human gut
62591
62518
-
Phe
GAA
[ENA]
¢þ
>WENV182999511
OLBZ01000009
[OLBZ] human gut metagenome; human gut
65996
65925
-
Gln
TTG
[ENA]
¢þ
>WENV182999509
OLBZ01000004
[OLBZ] human gut metagenome; human gut
76875
76802
-
Glu
CTC
[ENA]
¢þ
>WENV182999508
OLBZ01000004
[OLBZ] human gut metagenome; human gut
77222
77135
-
Ser
GCT
[ENA]
¢þ
>WENV182999527
OLBZ01000028
[OLBZ] human gut metagenome; human gut
79373
79448
+
Pro
GGG
[ENA]
¢þ
>WENV182999507
OLBZ01000004
[OLBZ] human gut metagenome; human gut
79820
79747
-
Cys
GCA
[ENA]
¢þ
>WENV182999500
OLBZ01000001
[OLBZ] human gut metagenome; human gut
81459
81371
-
Ser
GGA
[ENA]
¢þ
>WENV182999513
OLBZ01000010
[OLBZ] human gut metagenome; human gut
85171
85096
-
Phe
GAA
[ENA]
¢þ
>WENV182999512
OLBZ01000010
[OLBZ] human gut metagenome; human gut
85353
85426
+
Pro
CGG
[ENA]
¢þ
>WENV182999515
OLBZ01000012
[OLBZ] human gut metagenome; human gut
87532
87459
-
Thr
CGT
[ENA]
¢þ
>WENV182999523
OLBZ01000021
[OLBZ] human gut metagenome; human gut
97332
97258
-
Met
CAT
[ENA]
¢þ
>WENV182999522
OLBZ01000021
[OLBZ] human gut metagenome; human gut
97467
97393
-
Met
CAT
[ENA]
¢þ
>WENV182999517
OLBZ01000013
[OLBZ] human gut metagenome; human gut
98943
98872
-
Gln
TTG
[ENA]
¢þ
>WENV182999510
OLBZ01000008
[OLBZ] human gut metagenome; human gut
108352
108279
-
Phe
GAA
[ENA]
¢þ
>WENV182999518
OLBZ01000015
[OLBZ] human gut metagenome; human gut
109487
109415
-
Arg
CCG
[ENA]
¢þ
>WENV182999504
OLBZ01000003
[OLBZ] human gut metagenome; human gut
119105
119177
+
Arg
CCT
[ENA]
¢þ
>WENV182999499
OLBZ01000001
[OLBZ] human gut metagenome; human gut
124899
124825
-
His
GTG
[ENA]
¢þ
>WENV182999502
OLBZ01000002
[OLBZ] human gut metagenome; human gut
178204
178130
-
Ile2
CAT
[ENA]
¢þ
>WENV182999498
OLBZ01000001
[OLBZ] human gut metagenome; human gut
193920
193835
-
Ser
TGA
[ENA]
¢þ
>WENV182999497
OLBZ01000001
[OLBZ] human gut metagenome; human gut
207547
207620
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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