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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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HOW TO USE
tRNA gene List
[OLCF] human gut metagenome; human gut
HIT:
156 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183000605
OLCF01006457
[OLCF] human gut metagenome; human gut
59
144
+
Leu
CAA
[ENA]
¢þ
>WENV183000612
OLCF01007717
[OLCF] human gut metagenome; human gut
61
144
+
Tyr
GTA
[ENA]
¢þ
>WENV183000574
OLCF01002734
[OLCF] human gut metagenome; human gut
63
137
+
fMet
CAT
[ENA]
¢þ
>WENV183000592
OLCF01004713
[OLCF] human gut metagenome; human gut
67
153
+
Leu
AAG
[ENA]
¢þ
>WENV183000560
OLCF01001727
[OLCF] human gut metagenome; human gut
70
157
+
Leu
TAA
[ENA]
¢þ
>WENV183000576
OLCF01002817
[OLCF] human gut metagenome; human gut
83
158
+
Phe
GAA
[ENA]
¢þ
>WENV183000582
OLCF01003544
[OLCF] human gut metagenome; human gut
84
-1
-
Ser
TGA
[ENA]
¢þ
>WENV183000597
OLCF01005527
[OLCF] human gut metagenome; human gut
88
161
+
Gln
TTG
[ENA]
¢þ
>WENV183000510
OLCF01000159
[OLCF] human gut metagenome; human gut
95
171
+
Val
TAC
[ENA]
¢þ
>WENV183000598
OLCF01005671
[OLCF] human gut metagenome; human gut
96
182
+
Leu
GAG
[ENA]
¢þ
>WENV183000595
OLCF01005155
[OLCF] human gut metagenome; human gut
117
190
+
Ile2
CAT
[ENA]
¢þ
>WENV183000548
OLCF01001311
[OLCF] human gut metagenome; human gut
121
44
-
Pro
TGG
[ENA]
¢þ
>WENV183000507
OLCF01000132
[OLCF] human gut metagenome; human gut
124
48
-
Arg
ACG
[ENA]
¢þ
>WENV183000556
OLCF01001637
[OLCF] human gut metagenome; human gut
139
217
+
Arg
CCT
[ENA]
¢þ
>WENV183000608
OLCF01006947
[OLCF] human gut metagenome; human gut
145
70
-
Thr
GGT
[ENA]
¢þ
>WENV183000604
OLCF01006426
[OLCF] human gut metagenome; human gut
146
219
+
Lys
CTT
[ENA]
¢þ
>WENV183000575
OLCF01002734
[OLCF] human gut metagenome; human gut
156
230
+
Phe
GAA
[ENA]
¢þ
>WENV183000495
OLCF01000060
[OLCF] human gut metagenome; human gut
158
84
-
Asp
GTC
[ENA]
¢þ
>WENV183000613
OLCF01007717
[OLCF] human gut metagenome; human gut
158
233
+
Gln
TTG
[ENA]
¢þ
>WENV183000553
OLCF01001609
[OLCF] human gut metagenome; human gut
161
237
+
Arg
CCG
[ENA]
¢þ
>WENV183000572
OLCF01002616
[OLCF] human gut metagenome; human gut
182
98
-
Tyr
GTA
[ENA]
¢þ
>WENV183000618
OLCF01008771
[OLCF] human gut metagenome; human gut
182
110
-
Thr
CGT
[ENA]
¢þ
>WENV183000587
OLCF01004102
[OLCF] human gut metagenome; human gut
186
260
+
Arg
CCT
[ENA]
¢þ
>WENV183000577
OLCF01002817
[OLCF] human gut metagenome; human gut
199
274
+
Gly
GCC
[ENA]
¢þ
>WENV183000579
OLCF01002957
[OLCF] human gut metagenome; human gut
204
279
+
Arg
CCT
[ENA]
¢þ
>WENV183000562
OLCF01001752
[OLCF] human gut metagenome; human gut
222
129
-
Ser
GCT
[ENA]
¢þ
>WENV183000588
OLCF01004390
[OLCF] human gut metagenome; human gut
222
135
-
Ser
GCT
[ENA]
¢þ
>WENV183000607
OLCF01006947
[OLCF] human gut metagenome; human gut
225
149
-
Asp
GTC
[ENA]
¢þ
>WENV183000580
OLCF01003052
[OLCF] human gut metagenome; human gut
234
309
+
Trp
CCA
[ENA]
¢þ
>WENV183000614
OLCF01007717
[OLCF] human gut metagenome; human gut
242
317
+
Lys
TTT
[ENA]
¢þ
>WENV183000483
OLCF01000032
[OLCF] human gut metagenome; human gut
264
190
-
Cys
GCA
[ENA]
¢þ
>WENV183000554
OLCF01001609
[OLCF] human gut metagenome; human gut
296
371
+
His
GTG
[ENA]
¢þ
>WENV183000609
OLCF01007217
[OLCF] human gut metagenome; human gut
296
372
+
Met
CAT
[ENA]
¢þ
>WENV183000584
OLCF01003671
[OLCF] human gut metagenome; human gut
302
391
+
Ser
CGA
[ENA]
¢þ
>WENV183000578
OLCF01002817
[OLCF] human gut metagenome; human gut
304
378
+
Cys
GCA
[ENA]
¢þ
>WENV183000586
OLCF01003890
[OLCF] human gut metagenome; human gut
309
218
-
Ser
GGA
[ENA]
¢þ
>WENV183000617
OLCF01007755
[OLCF] human gut metagenome; human gut
315
402
+
Ser
GGA
[ENA]
¢þ
>WENV183000615
OLCF01007717
[OLCF] human gut metagenome; human gut
331
419
+
Leu
TAA
[ENA]
¢þ
>WENV183000561
OLCF01001752
[OLCF] human gut metagenome; human gut
343
256
-
Ser
TGA
[ENA]
¢þ
>WENV183000557
OLCF01001662
[OLCF] human gut metagenome; human gut
359
284
-
Thr
CGT
[ENA]
¢þ
>WENV183000558
OLCF01001688
[OLCF] human gut metagenome; human gut
392
465
+
Ile2
CAT
[ENA]
¢þ
>WENV183000555
OLCF01001609
[OLCF] human gut metagenome; human gut
392
478
+
Leu
CAG
[ENA]
¢þ
>WENV183000599
OLCF01005792
[OLCF] human gut metagenome; human gut
399
475
+
Ile2
CAT
[ENA]
¢þ
>WENV183000602
OLCF01005916
[OLCF] human gut metagenome; human gut
414
505
+
Ser
CGA
[ENA]
¢þ
>WENV183000528
OLCF01000581
[OLCF] human gut metagenome; human gut
416
332
-
Tyr
GTA
[ENA]
¢þ
>WENV183000610
OLCF01007217
[OLCF] human gut metagenome; human gut
420
493
+
Gln
TTG
[ENA]
¢þ
>WENV183000616
OLCF01007717
[OLCF] human gut metagenome; human gut
426
499
+
Gly
TCC
[ENA]
¢þ
>WENV183000551
OLCF01001462
[OLCF] human gut metagenome; human gut
429
504
+
Asn
GTT
[ENA]
¢þ
>WENV183000564
OLCF01001866
[OLCF] human gut metagenome; human gut
430
347
-
Leu
GAG
[ENA]
¢þ
>WENV183000589
OLCF01004589
[OLCF] human gut metagenome; human gut
462
538
+
Asn
GTT
[ENA]
¢þ
>WENV183000600
OLCF01005901
[OLCF] human gut metagenome; human gut
475
549
+
Pro
TGG
[ENA]
¢þ
>WENV183000596
OLCF01005290
[OLCF] human gut metagenome; human gut
495
422
-
Ile2
CAT
[ENA]
¢þ
>WENV183000527
OLCF01000581
[OLCF] human gut metagenome; human gut
500
425
-
Thr
TGT
[ENA]
¢þ
>WENV183000532
OLCF01000670
[OLCF] human gut metagenome; human gut
511
436
-
Pro
CGG
[ENA]
¢þ
>WENV183000591
OLCF01004665
[OLCF] human gut metagenome; human gut
516
440
-
Ile
GAT
[ENA]
¢þ
>WENV183000611
OLCF01007606
[OLCF] human gut metagenome; human gut
529
445
-
Leu
CAG
[ENA]
¢þ
>WENV183000585
OLCF01003890
[OLCF] human gut metagenome; human gut
532
446
-
Ser
TGA
[ENA]
¢þ
>WENV183000601
OLCF01005901
[OLCF] human gut metagenome; human gut
555
627
+
Gly
TCC
[ENA]
¢þ
>WENV183000594
OLCF01005147
[OLCF] human gut metagenome; human gut
570
643
+
Gly
GCC
[ENA]
¢þ
>WENV183000606
OLCF01006578
[OLCF] human gut metagenome; human gut
582
487
-
SeC
TCA
[ENA]
¢þ
>WENV183000581
OLCF01003199
[OLCF] human gut metagenome; human gut
582
666
+
Leu
CAG
[ENA]
¢þ
>WENV183000590
OLCF01004665
[OLCF] human gut metagenome; human gut
595
520
-
Ala
TGC
[ENA]
¢þ
>WENV183000463
OLCF01000003
[OLCF] human gut metagenome; human gut
603
675
+
Arg
CCG
[ENA]
¢þ
>WENV183000603
OLCF01006401
[OLCF] human gut metagenome; human gut
612
537
-
Lys
CTT
[ENA]
¢þ
>WENV183000531
OLCF01000670
[OLCF] human gut metagenome; human gut
616
544
-
Gln
CTG
[ENA]
¢þ
>WENV183000565
OLCF01001934
[OLCF] human gut metagenome; human gut
658
728
+
Gly
TCC
[ENA]
¢þ
>WENV183000539
OLCF01000942
[OLCF] human gut metagenome; human gut
663
583
-
Leu
TAG
[ENA]
¢þ
>WENV183000552
OLCF01001605
[OLCF] human gut metagenome; human gut
666
738
+
Glu
CTC
[ENA]
¢þ
>WENV183000573
OLCF01002620
[OLCF] human gut metagenome; human gut
667
592
-
Phe
GAA
[ENA]
¢þ
>WENV183000593
OLCF01004724
[OLCF] human gut metagenome; human gut
674
748
+
Thr
GGT
[ENA]
¢þ
>WENV183000534
OLCF01000749
[OLCF] human gut metagenome; human gut
688
612
-
Arg
TCT
[ENA]
¢þ
>WENV183000568
OLCF01002228
[OLCF] human gut metagenome; human gut
750
826
+
Pro
CGG
[ENA]
¢þ
>WENV183000583
OLCF01003617
[OLCF] human gut metagenome; human gut
844
915
+
Val
TAC
[ENA]
¢þ
>WENV183000516
OLCF01000212
[OLCF] human gut metagenome; human gut
910
836
-
Arg
CCT
[ENA]
¢þ
>WENV183000535
OLCF01000832
[OLCF] human gut metagenome; human gut
988
894
-
SeC
TCA
[ENA]
¢þ
>WENV183000570
OLCF01002443
[OLCF] human gut metagenome; human gut
1004
930
-
Gly
TCC
[ENA]
¢þ
>WENV183000545
OLCF01001302
[OLCF] human gut metagenome; human gut
1013
1088
+
Gly
GCC
[ENA]
¢þ
>WENV183000549
OLCF01001346
[OLCF] human gut metagenome; human gut
1015
1090
+
Ile2
CAT
[ENA]
¢þ
>WENV183000566
OLCF01002215
[OLCF] human gut metagenome; human gut
1061
1132
+
Glu
TTC
[ENA]
¢þ
>WENV183000520
OLCF01000304
[OLCF] human gut metagenome; human gut
1107
1198
+
Ser
GGA
[ENA]
¢þ
>WENV183000530
OLCF01000622
[OLCF] human gut metagenome; human gut
1113
1027
-
Leu
CAG
[ENA]
¢þ
>WENV183000567
OLCF01002215
[OLCF] human gut metagenome; human gut
1138
1210
+
Thr
TGT
[ENA]
¢þ
>WENV183000546
OLCF01001302
[OLCF] human gut metagenome; human gut
1142
1215
+
Cys
GCA
[ENA]
¢þ
>WENV183000569
OLCF01002379
[OLCF] human gut metagenome; human gut
1155
1079
-
fMet
CAT
[ENA]
¢þ
>WENV183000571
OLCF01002445
[OLCF] human gut metagenome; human gut
1180
1104
-
Pro
GGG
[ENA]
¢þ
>WENV183000550
OLCF01001408
[OLCF] human gut metagenome; human gut
1224
1296
+
Cys
GCA
[ENA]
¢þ
>WENV183000547
OLCF01001302
[OLCF] human gut metagenome; human gut
1228
1314
+
Leu
TAA
[ENA]
¢þ
>WENV183000536
OLCF01000850
[OLCF] human gut metagenome; human gut
1288
1363
+
Val
GAC
[ENA]
¢þ
>WENV183000563
OLCF01001797
[OLCF] human gut metagenome; human gut
1293
1368
+
Lys
CTT
[ENA]
¢þ
>WENV183000559
OLCF01001706
[OLCF] human gut metagenome; human gut
1314
1398
+
Leu
CAA
[ENA]
¢þ
>WENV183000525
OLCF01000373
[OLCF] human gut metagenome; human gut
1465
1539
+
Ile
GAT
[ENA]
¢þ
>WENV183000538
OLCF01000920
[OLCF] human gut metagenome; human gut
1493
1418
-
Trp
CCA
[ENA]
¢þ
>WENV183000533
OLCF01000726
[OLCF] human gut metagenome; human gut
1521
1597
+
Arg
CCG
[ENA]
¢þ
>WENV183000526
OLCF01000373
[OLCF] human gut metagenome; human gut
1556
1630
+
Ala
TGC
[ENA]
¢þ
>WENV183000537
OLCF01000920
[OLCF] human gut metagenome; human gut
1578
1502
-
Asp
GTC
[ENA]
¢þ
>WENV183000506
OLCF01000111
[OLCF] human gut metagenome; human gut
1611
1690
+
Leu
CAA
[ENA]
¢þ
>WENV183000544
OLCF01001151
[OLCF] human gut metagenome; human gut
1659
1735
+
Trp
CCA
[ENA]
¢þ
>WENV183000540
OLCF01000976
[OLCF] human gut metagenome; human gut
1810
1885
+
Arg
TCT
[ENA]
¢þ
>WENV183000541
OLCF01000976
[OLCF] human gut metagenome; human gut
1894
1968
+
His
GTG
[ENA]
¢þ
>WENV183000543
OLCF01001014
[OLCF] human gut metagenome; human gut
1947
2022
+
Thr
CGT
[ENA]
¢þ
>WENV183000529
OLCF01000603
[OLCF] human gut metagenome; human gut
2012
2087
+
Ala
GGC
[ENA]
¢þ
>WENV183000542
OLCF01000989
[OLCF] human gut metagenome; human gut
2097
2172
+
Trp
CCA
[ENA]
¢þ
>WENV183000513
OLCF01000199
[OLCF] human gut metagenome; human gut
3041
3117
+
fMet
CAT
[ENA]
¢þ
>WENV183000512
OLCF01000178
[OLCF] human gut metagenome; human gut
3258
3334
+
Val
CAC
[ENA]
¢þ
>WENV183000511
OLCF01000166
[OLCF] human gut metagenome; human gut
3431
3504
+
Ala
CGC
[ENA]
¢þ
>WENV183000519
OLCF01000292
[OLCF] human gut metagenome; human gut
3445
3371
-
Glu
TTC
[ENA]
¢þ
>WENV183000518
OLCF01000292
[OLCF] human gut metagenome; human gut
3613
3537
-
Met
CAT
[ENA]
¢þ
>WENV183000522
OLCF01000318
[OLCF] human gut metagenome; human gut
3922
3846
-
Asn
GTT
[ENA]
¢þ
>WENV183000521
OLCF01000318
[OLCF] human gut metagenome; human gut
4037
3963
-
Glu
CTC
[ENA]
¢þ
>WENV183000523
OLCF01000329
[OLCF] human gut metagenome; human gut
4230
4305
+
Gly
CCC
[ENA]
¢þ
>WENV183000524
OLCF01000352
[OLCF] human gut metagenome; human gut
4505
4579
+
Thr
TGT
[ENA]
¢þ
>WENV183000505
OLCF01000109
[OLCF] human gut metagenome; human gut
4615
4700
+
Ser
TGA
[ENA]
¢þ
>WENV183000517
OLCF01000258
[OLCF] human gut metagenome; human gut
4985
5068
+
Leu
TAA
[ENA]
¢þ
>WENV183000470
OLCF01000014
[OLCF] human gut metagenome; human gut
6567
6482
-
Ser
TGA
[ENA]
¢þ
>WENV183000514
OLCF01000202
[OLCF] human gut metagenome; human gut
6628
6701
+
Gln
CTG
[ENA]
¢þ
>WENV183000515
OLCF01000202
[OLCF] human gut metagenome; human gut
6735
6810
+
Pro
CGG
[ENA]
¢þ
>WENV183000508
OLCF01000140
[OLCF] human gut metagenome; human gut
7607
7532
-
Pro
TGG
[ENA]
¢þ
>WENV183000491
OLCF01000044
[OLCF] human gut metagenome; human gut
8043
7972
-
Gln
CTG
[ENA]
¢þ
>WENV183000509
OLCF01000147
[OLCF] human gut metagenome; human gut
8171
8081
-
Ser
CGA
[ENA]
¢þ
>WENV183000496
OLCF01000061
[OLCF] human gut metagenome; human gut
8354
8442
+
Ser
GGA
[ENA]
¢þ
>WENV183000504
OLCF01000104
[OLCF] human gut metagenome; human gut
9920
9849
-
Gln
TTG
[ENA]
¢þ
>WENV183000502
OLCF01000088
[OLCF] human gut metagenome; human gut
10062
9987
-
His
GTG
[ENA]
¢þ
>WENV183000489
OLCF01000035
[OLCF] human gut metagenome; human gut
11327
11254
-
Trp
CCA
[ENA]
¢þ
>WENV183000497
OLCF01000062
[OLCF] human gut metagenome; human gut
11916
11843
-
Gly
CCC
[ENA]
¢þ
>WENV183000500
OLCF01000078
[OLCF] human gut metagenome; human gut
12163
12088
-
Phe
GAA
[ENA]
¢þ
>WENV183000488
OLCF01000035
[OLCF] human gut metagenome; human gut
12692
12620
-
Thr
GGT
[ENA]
¢þ
>WENV183000487
OLCF01000035
[OLCF] human gut metagenome; human gut
12893
12810
-
Tyr
GTA
[ENA]
¢þ
>WENV183000486
OLCF01000035
[OLCF] human gut metagenome; human gut
13010
12936
-
Thr
TGT
[ENA]
¢þ
>WENV183000498
OLCF01000066
[OLCF] human gut metagenome; human gut
14483
14571
+
Ser
GGA
[ENA]
¢þ
>WENV183000503
OLCF01000092
[OLCF] human gut metagenome; human gut
16585
16660
+
Pro
TGG
[ENA]
¢þ
>WENV183000493
OLCF01000046
[OLCF] human gut metagenome; human gut
16968
16894
-
Met
CAT
[ENA]
¢þ
>WENV183000492
OLCF01000046
[OLCF] human gut metagenome; human gut
17104
17030
-
Met
CAT
[ENA]
¢þ
>WENV183000479
OLCF01000026
[OLCF] human gut metagenome; human gut
18751
18825
+
Glu
TTC
[ENA]
¢þ
>WENV183000469
OLCF01000014
[OLCF] human gut metagenome; human gut
20189
20262
+
Trp
CCA
[ENA]
¢þ
>WENV183000478
OLCF01000024
[OLCF] human gut metagenome; human gut
20666
20593
-
Lys
CTT
[ENA]
¢þ
>WENV183000477
OLCF01000024
[OLCF] human gut metagenome; human gut
20759
20686
-
Lys
CTT
[ENA]
¢þ
>WENV183000476
OLCF01000024
[OLCF] human gut metagenome; human gut
20856
20783
-
Lys
CTT
[ENA]
¢þ
>WENV183000471
OLCF01000015
[OLCF] human gut metagenome; human gut
21204
21278
+
Ile2
CAT
[ENA]
¢þ
>WENV183000501
OLCF01000080
[OLCF] human gut metagenome; human gut
21219
21293
+
Arg
TCT
[ENA]
¢þ
>WENV183000468
OLCF01000012
[OLCF] human gut metagenome; human gut
22696
22622
-
Ala
GGC
[ENA]
¢þ
>WENV183000499
OLCF01000067
[OLCF] human gut metagenome; human gut
25606
25533
-
Thr
CGT
[ENA]
¢þ
>WENV183000472
OLCF01000017
[OLCF] human gut metagenome; human gut
25807
25879
+
Arg
CCT
[ENA]
¢þ
>WENV183000484
OLCF01000035
[OLCF] human gut metagenome; human gut
26117
26191
+
Asn
GTT
[ENA]
¢þ
>WENV183000485
OLCF01000035
[OLCF] human gut metagenome; human gut
26216
26290
+
Asn
GTT
[ENA]
¢þ
>WENV183000465
OLCF01000007
[OLCF] human gut metagenome; human gut
26770
26699
-
Gln
TTG
[ENA]
¢þ
>WENV183000474
OLCF01000020
[OLCF] human gut metagenome; human gut
28697
28623
-
Thr
TGT
[ENA]
¢þ
>WENV183000494
OLCF01000049
[OLCF] human gut metagenome; human gut
38671
38744
+
fMet
CAT
[ENA]
¢þ
>WENV183000481
OLCF01000030
[OLCF] human gut metagenome; human gut
42180
42255
+
Lys
TTT
[ENA]
¢þ
>WENV183000490
OLCF01000044
[OLCF] human gut metagenome; human gut
42868
42943
+
Pro
GGG
[ENA]
¢þ
>WENV183000473
OLCF01000020
[OLCF] human gut metagenome; human gut
43353
43436
+
Tyr
GTA
[ENA]
¢þ
>WENV183000475
OLCF01000022
[OLCF] human gut metagenome; human gut
53524
53606
+
Leu
TAG
[ENA]
¢þ
>WENV183000482
OLCF01000031
[OLCF] human gut metagenome; human gut
54374
54302
-
Glu
TTC
[ENA]
¢þ
>WENV183000480
OLCF01000027
[OLCF] human gut metagenome; human gut
60629
60704
+
Val
TAC
[ENA]
¢þ
>WENV183000467
OLCF01000010
[OLCF] human gut metagenome; human gut
100591
100516
-
Phe
GAA
[ENA]
¢þ
>WENV183000466
OLCF01000010
[OLCF] human gut metagenome; human gut
100772
100845
+
Pro
CGG
[ENA]
¢þ
>WENV183000464
OLCF01000005
[OLCF] human gut metagenome; human gut
117981
117907
-
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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