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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLCK] human gut metagenome; human gut
HIT:
111 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183001643
OLCK01006682
[OLCK] human gut metagenome; human gut
4
78
+
Met
CAT
[ENA]
¢þ
>WENV183001650
OLCK01007988
[OLCK] human gut metagenome; human gut
10
81
+
Gln
TTG
[ENA]
¢þ
>WENV183001645
OLCK01007336
[OLCK] human gut metagenome; human gut
62
137
+
Pro
TGG
[ENA]
¢þ
>WENV183001613
OLCK01003233
[OLCK] human gut metagenome; human gut
89
165
+
Arg
CCG
[ENA]
¢þ
>WENV183001630
OLCK01005321
[OLCK] human gut metagenome; human gut
94
20
-
Glu
CTC
[ENA]
¢þ
>WENV183001583
OLCK01001338
[OLCK] human gut metagenome; human gut
94
165
+
Gln
CTG
[ENA]
¢þ
>WENV183001582
OLCK01001279
[OLCK] human gut metagenome; human gut
95
22
-
Lys
CTT
[ENA]
¢þ
>WENV183001631
OLCK01005395
[OLCK] human gut metagenome; human gut
112
183
+
Gln
TTG
[ENA]
¢þ
>WENV183001647
OLCK01007639
[OLCK] human gut metagenome; human gut
117
200
+
Tyr
GTA
[ENA]
¢þ
>WENV183001542
OLCK01000017
[OLCK] human gut metagenome; human gut
120
192
+
Arg
CCG
[ENA]
¢þ
>WENV183001639
OLCK01005931
[OLCK] human gut metagenome; human gut
136
60
-
Met
CAT
[ENA]
¢þ
>WENV183001646
OLCK01007336
[OLCK] human gut metagenome; human gut
141
217
+
Arg
TCT
[ENA]
¢þ
>WENV183001627
OLCK01005056
[OLCK] human gut metagenome; human gut
151
223
+
Arg
CCT
[ENA]
¢þ
>WENV183001596
OLCK01002595
[OLCK] human gut metagenome; human gut
163
87
-
Asn
GTT
[ENA]
¢þ
>WENV183001629
OLCK01005186
[OLCK] human gut metagenome; human gut
165
91
-
Glu
CTC
[ENA]
¢þ
>WENV183001621
OLCK01004488
[OLCK] human gut metagenome; human gut
172
85
-
Ser
GCT
[ENA]
¢þ
>WENV183001642
OLCK01006285
[OLCK] human gut metagenome; human gut
187
112
-
Glu
TTC
[ENA]
¢þ
>WENV183001560
OLCK01000466
[OLCK] human gut metagenome; human gut
200
116
-
Leu
CAA
[ENA]
¢þ
>WENV183001597
OLCK01002598
[OLCK] human gut metagenome; human gut
208
136
-
Cys
GCA
[ENA]
¢þ
>WENV183001638
OLCK01005931
[OLCK] human gut metagenome; human gut
213
138
-
Thr
GGT
[ENA]
¢þ
>WENV183001600
OLCK01002756
[OLCK] human gut metagenome; human gut
222
298
+
Pro
CGG
[ENA]
¢þ
>WENV183001587
OLCK01001688
[OLCK] human gut metagenome; human gut
225
151
-
Asn
GTT
[ENA]
¢þ
>WENV183001641
OLCK01006285
[OLCK] human gut metagenome; human gut
271
196
-
Ala
GGC
[ENA]
¢þ
>WENV183001561
OLCK01000495
[OLCK] human gut metagenome; human gut
274
200
-
Arg
TCT
[ENA]
¢þ
>WENV183001628
OLCK01005186
[OLCK] human gut metagenome; human gut
280
193
-
Ser
GCT
[ENA]
¢þ
>WENV183001601
OLCK01002756
[OLCK] human gut metagenome; human gut
302
375
+
Gly
TCC
[ENA]
¢þ
>WENV183001637
OLCK01005931
[OLCK] human gut metagenome; human gut
318
242
-
fMet
CAT
[ENA]
¢þ
>WENV183001578
OLCK01001115
[OLCK] human gut metagenome; human gut
328
403
+
Glu
TTC
[ENA]
¢þ
>WENV183001603
OLCK01003178
[OLCK] human gut metagenome; human gut
333
250
-
Leu
TAG
[ENA]
¢þ
>WENV183001636
OLCK01005621
[OLCK] human gut metagenome; human gut
336
263
-
Gly
CCC
[ENA]
¢þ
>WENV183001595
OLCK01002430
[OLCK] human gut metagenome; human gut
336
410
+
Arg
CCG
[ENA]
¢þ
>WENV183001644
OLCK01007301
[OLCK] human gut metagenome; human gut
342
417
+
Val
TAC
[ENA]
¢þ
>WENV183001632
OLCK01005395
[OLCK] human gut metagenome; human gut
343
416
+
His
GTG
[ENA]
¢þ
>WENV183001558
OLCK01000322
[OLCK] human gut metagenome; human gut
354
279
-
Val
TAC
[ENA]
¢þ
>WENV183001649
OLCK01007776
[OLCK] human gut metagenome; human gut
358
272
-
Leu
CAA
[ENA]
¢þ
>WENV183001634
OLCK01005434
[OLCK] human gut metagenome; human gut
365
454
+
Ser
GCT
[ENA]
¢þ
>WENV183001640
OLCK01006097
[OLCK] human gut metagenome; human gut
378
464
+
Leu
TAG
[ENA]
¢þ
>WENV183001651
OLCK01008179
[OLCK] human gut metagenome; human gut
380
464
+
Leu
CAA
[ENA]
¢þ
>WENV183001619
OLCK01004147
[OLCK] human gut metagenome; human gut
397
486
+
Ser
GCT
[ENA]
¢þ
>WENV183001625
OLCK01004880
[OLCK] human gut metagenome; human gut
398
309
-
Ser
TGA
[ENA]
¢þ
>WENV183001635
OLCK01005559
[OLCK] human gut metagenome; human gut
402
329
-
Trp
CCA
[ENA]
¢þ
>WENV183001605
OLCK01003197
[OLCK] human gut metagenome; human gut
419
345
-
Gln
TTG
[ENA]
¢þ
>WENV183001633
OLCK01005395
[OLCK] human gut metagenome; human gut
421
495
+
Thr
TGT
[ENA]
¢þ
>WENV183001591
OLCK01002224
[OLCK] human gut metagenome; human gut
421
505
+
Leu
GAG
[ENA]
¢þ
>WENV183001612
OLCK01003218
[OLCK] human gut metagenome; human gut
431
343
-
Ser
GCT
[ENA]
¢þ
>WENV183001648
OLCK01007776
[OLCK] human gut metagenome; human gut
443
367
-
Arg
ACG
[ENA]
¢þ
>WENV183001585
OLCK01001394
[OLCK] human gut metagenome; human gut
443
368
-
Asn
GTT
[ENA]
¢þ
>WENV183001626
OLCK01004884
[OLCK] human gut metagenome; human gut
497
585
+
Ser
CGA
[ENA]
¢þ
>WENV183001604
OLCK01003197
[OLCK] human gut metagenome; human gut
500
424
-
Pro
TGG
[ENA]
¢þ
>WENV183001592
OLCK01002224
[OLCK] human gut metagenome; human gut
513
590
+
Gln
CTG
[ENA]
¢þ
>WENV183001623
OLCK01004860
[OLCK] human gut metagenome; human gut
528
601
+
Thr
CGT
[ENA]
¢þ
>WENV183001611
OLCK01003218
[OLCK] human gut metagenome; human gut
537
454
-
Ser
TGA
[ENA]
¢þ
>WENV183001602
OLCK01002794
[OLCK] human gut metagenome; human gut
540
615
+
Trp
CCA
[ENA]
¢þ
>WENV183001614
OLCK01003495
[OLCK] human gut metagenome; human gut
547
622
+
Val
TAC
[ENA]
¢þ
>WENV183001551
OLCK01000193
[OLCK] human gut metagenome; human gut
558
634
+
Ile
GAT
[ENA]
¢þ
>WENV183001548
OLCK01000132
[OLCK] human gut metagenome; human gut
573
499
-
Ile2
CAT
[ENA]
¢þ
>WENV183001586
OLCK01001646
[OLCK] human gut metagenome; human gut
592
505
-
Ser
TGA
[ENA]
¢þ
>WENV183001599
OLCK01002743
[OLCK] human gut metagenome; human gut
594
521
-
Gly
CCC
[ENA]
¢þ
>WENV183001618
OLCK01004023
[OLCK] human gut metagenome; human gut
601
528
-
Pro
CGG
[ENA]
¢þ
>WENV183001567
OLCK01000735
[OLCK] human gut metagenome; human gut
604
530
-
Asp
GTC
[ENA]
¢þ
>WENV183001588
OLCK01002176
[OLCK] human gut metagenome; human gut
607
532
-
Val
GAC
[ENA]
¢þ
>WENV183001610
OLCK01003218
[OLCK] human gut metagenome; human gut
613
539
-
Glu
TTC
[ENA]
¢þ
>WENV183001615
OLCK01003495
[OLCK] human gut metagenome; human gut
627
703
+
Asp
GTC
[ENA]
¢þ
>WENV183001624
OLCK01004860
[OLCK] human gut metagenome; human gut
631
704
+
Gly
CCC
[ENA]
¢þ
>WENV183001594
OLCK01002414
[OLCK] human gut metagenome; human gut
658
732
+
Pro
GGG
[ENA]
¢þ
>WENV183001620
OLCK01004189
[OLCK] human gut metagenome; human gut
664
588
-
Val
GAC
[ENA]
¢þ
>WENV183001579
OLCK01001116
[OLCK] human gut metagenome; human gut
686
760
+
Met
CAT
[ENA]
¢þ
>WENV183001609
OLCK01003218
[OLCK] human gut metagenome; human gut
691
616
-
Thr
TGT
[ENA]
¢þ
>WENV183001616
OLCK01003495
[OLCK] human gut metagenome; human gut
706
780
+
Gly
GCC
[ENA]
¢þ
>WENV183001556
OLCK01000298
[OLCK] human gut metagenome; human gut
722
797
+
Lys
TTT
[ENA]
¢þ
>WENV183001608
OLCK01003218
[OLCK] human gut metagenome; human gut
776
700
-
Asp
GTC
[ENA]
¢þ
>WENV183001622
OLCK01004497
[OLCK] human gut metagenome; human gut
777
691
-
Leu
CAG
[ENA]
¢þ
>WENV183001598
OLCK01002613
[OLCK] human gut metagenome; human gut
785
699
-
Leu
CAG
[ENA]
¢þ
>WENV183001617
OLCK01003495
[OLCK] human gut metagenome; human gut
816
891
+
Asn
GTT
[ENA]
¢þ
>WENV183001590
OLCK01002223
[OLCK] human gut metagenome; human gut
818
744
-
Thr
GGT
[ENA]
¢þ
>WENV183001574
OLCK01001037
[OLCK] human gut metagenome; human gut
818
744
-
Thr
TGT
[ENA]
¢þ
>WENV183001607
OLCK01003218
[OLCK] human gut metagenome; human gut
860
785
-
Val
TAC
[ENA]
¢þ
>WENV183001593
OLCK01002352
[OLCK] human gut metagenome; human gut
864
952
+
Ser
GGA
[ENA]
¢þ
>WENV183001550
OLCK01000189
[OLCK] human gut metagenome; human gut
877
804
-
Thr
CGT
[ENA]
¢þ
>WENV183001562
OLCK01000614
[OLCK] human gut metagenome; human gut
893
968
+
Phe
GAA
[ENA]
¢þ
>WENV183001577
OLCK01001107
[OLCK] human gut metagenome; human gut
916
841
-
His
GTG
[ENA]
¢þ
>WENV183001606
OLCK01003218
[OLCK] human gut metagenome; human gut
946
871
-
Phe
GAA
[ENA]
¢þ
>WENV183001555
OLCK01000281
[OLCK] human gut metagenome; human gut
993
911
-
Leu
TAG
[ENA]
¢þ
>WENV183001589
OLCK01002223
[OLCK] human gut metagenome; human gut
1004
919
-
Tyr
GTA
[ENA]
¢þ
>WENV183001576
OLCK01001107
[OLCK] human gut metagenome; human gut
1005
929
-
Arg
TCT
[ENA]
¢þ
>WENV183001559
OLCK01000357
[OLCK] human gut metagenome; human gut
1077
1151
+
Ala
GGC
[ENA]
¢þ
>WENV183001572
OLCK01000945
[OLCK] human gut metagenome; human gut
1110
1038
-
Arg
CCT
[ENA]
¢þ
>WENV183001575
OLCK01001107
[OLCK] human gut metagenome; human gut
1113
1037
-
Pro
TGG
[ENA]
¢þ
>WENV183001563
OLCK01000721
[OLCK] human gut metagenome; human gut
1205
1132
-
Phe
GAA
[ENA]
¢þ
>WENV183001584
OLCK01001348
[OLCK] human gut metagenome; human gut
1269
1179
-
Ser
GGA
[ENA]
¢þ
>WENV183001581
OLCK01001227
[OLCK] human gut metagenome; human gut
1420
1348
-
Thr
GGT
[ENA]
¢þ
>WENV183001573
OLCK01000973
[OLCK] human gut metagenome; human gut
1468
1389
-
Leu
CAA
[ENA]
¢þ
>WENV183001570
OLCK01000815
[OLCK] human gut metagenome; human gut
1584
1658
+
Val
CAC
[ENA]
¢þ
>WENV183001580
OLCK01001227
[OLCK] human gut metagenome; human gut
1621
1538
-
Tyr
GTA
[ENA]
¢þ
>WENV183001571
OLCK01000830
[OLCK] human gut metagenome; human gut
1682
1608
-
Glu
CTC
[ENA]
¢þ
>WENV183001566
OLCK01000727
[OLCK] human gut metagenome; human gut
1775
1848
+
Phe
GAA
[ENA]
¢þ
>WENV183001569
OLCK01000775
[OLCK] human gut metagenome; human gut
1834
1916
+
Leu
TAG
[ENA]
¢þ
>WENV183001544
OLCK01000056
[OLCK] human gut metagenome; human gut
1849
1778
-
Gln
CTG
[ENA]
¢þ
>WENV183001565
OLCK01000725
[OLCK] human gut metagenome; human gut
2167
2093
-
Ala
TGC
[ENA]
¢þ
>WENV183001564
OLCK01000725
[OLCK] human gut metagenome; human gut
2258
2184
-
Ile
GAT
[ENA]
¢þ
>WENV183001568
OLCK01000751
[OLCK] human gut metagenome; human gut
2277
2349
+
Glu
TTC
[ENA]
¢þ
>WENV183001549
OLCK01000145
[OLCK] human gut metagenome; human gut
2418
2491
+
Lys
CTT
[ENA]
¢þ
>WENV183001557
OLCK01000301
[OLCK] human gut metagenome; human gut
2469
2545
+
Val
TAC
[ENA]
¢þ
>WENV183001545
OLCK01000110
[OLCK] human gut metagenome; human gut
2573
2500
-
Trp
CCA
[ENA]
¢þ
>WENV183001554
OLCK01000269
[OLCK] human gut metagenome; human gut
2842
2917
+
Gly
CCC
[ENA]
¢þ
>WENV183001552
OLCK01000206
[OLCK] human gut metagenome; human gut
3006
3091
+
Ser
TGA
[ENA]
¢þ
>WENV183001553
OLCK01000228
[OLCK] human gut metagenome; human gut
3759
3671
-
Ser
GGA
[ENA]
¢þ
>WENV183001543
OLCK01000034
[OLCK] human gut metagenome; human gut
4132
4060
-
fMet
CAT
[ENA]
¢þ
>WENV183001547
OLCK01000126
[OLCK] human gut metagenome; human gut
4723
4798
+
His
GTG
[ENA]
¢þ
>WENV183001546
OLCK01000117
[OLCK] human gut metagenome; human gut
6072
6145
+
fMet
CAT
[ENA]
¢þ
>WENV183001541
OLCK01000003
[OLCK] human gut metagenome; human gut
10327
10256
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK