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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OLCS] human gut metagenome; human gut
HIT:
109 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183003480
OLCS01003260
[OLCS] human gut metagenome; human gut
4
75
+
Gln
TTG
[ENA]
¢þ
>WENV183003500
OLCS01005713
[OLCS] human gut metagenome; human gut
34
107
+
Lys
CTT
[ENA]
¢þ
>WENV183003476
OLCS01003042
[OLCS] human gut metagenome; human gut
39
114
+
Gly
TCC
[ENA]
¢þ
>WENV183003497
OLCS01005463
[OLCS] human gut metagenome; human gut
46
119
+
Lys
TTT
[ENA]
¢þ
>WENV183003496
OLCS01005338
[OLCS] human gut metagenome; human gut
79
151
+
Thr
GGT
[ENA]
¢þ
>WENV183003487
OLCS01003952
[OLCS] human gut metagenome; human gut
79
152
+
Lys
CTT
[ENA]
¢þ
>WENV183003505
OLCS01006408
[OLCS] human gut metagenome; human gut
85
10
-
fMet
CAT
[ENA]
¢þ
>WENV183003471
OLCS01002784
[OLCS] human gut metagenome; human gut
107
182
+
Thr
GGT
[ENA]
¢þ
>WENV183003463
OLCS01001719
[OLCS] human gut metagenome; human gut
115
42
-
Trp
CCA
[ENA]
¢þ
>WENV183003477
OLCS01003042
[OLCS] human gut metagenome; human gut
124
199
+
Lys
TTT
[ENA]
¢þ
>WENV183003515
OLCS01007551
[OLCS] human gut metagenome; human gut
138
228
+
Ser
GGA
[ENA]
¢þ
>WENV183003473
OLCS01002801
[OLCS] human gut metagenome; human gut
149
74
-
Gly
CCC
[ENA]
¢þ
>WENV183003465
OLCS01001913
[OLCS] human gut metagenome; human gut
152
76
-
Asp
GTC
[ENA]
¢þ
>WENV183003485
OLCS01003690
[OLCS] human gut metagenome; human gut
153
229
+
Arg
ACG
[ENA]
¢þ
>WENV183003507
OLCS01006609
[OLCS] human gut metagenome; human gut
161
236
+
Val
TAC
[ENA]
¢þ
>WENV183003441
OLCS01000743
[OLCS] human gut metagenome; human gut
165
91
-
Glu
CTC
[ENA]
¢þ
>WENV183003417
OLCS01000080
[OLCS] human gut metagenome; human gut
171
96
-
Lys
CTT
[ENA]
¢þ
>WENV183003442
OLCS01000868
[OLCS] human gut metagenome; human gut
172
244
+
Arg
CCT
[ENA]
¢þ
>WENV183003488
OLCS01003952
[OLCS] human gut metagenome; human gut
172
245
+
Lys
CTT
[ENA]
¢þ
>WENV183003504
OLCS01006408
[OLCS] human gut metagenome; human gut
175
91
-
Tyr
GTA
[ENA]
¢þ
>WENV183003434
OLCS01000598
[OLCS] human gut metagenome; human gut
182
256
+
Ile
GAT
[ENA]
¢þ
>WENV183003429
OLCS01000362
[OLCS] human gut metagenome; human gut
184
109
-
Pro
TGG
[ENA]
¢þ
>WENV183003475
OLCS01003037
[OLCS] human gut metagenome; human gut
184
112
-
Glu
TTC
[ENA]
¢þ
>WENV183003472
OLCS01002784
[OLCS] human gut metagenome; human gut
184
260
+
Met
CAT
[ENA]
¢þ
>WENV183003462
OLCS01001719
[OLCS] human gut metagenome; human gut
195
122
-
Asn
GTT
[ENA]
¢þ
>WENV183003478
OLCS01003042
[OLCS] human gut metagenome; human gut
212
298
+
Leu
CAG
[ENA]
¢þ
>WENV183003492
OLCS01004172
[OLCS] human gut metagenome; human gut
219
294
+
Arg
CCT
[ENA]
¢þ
>WENV183003481
OLCS01003260
[OLCS] human gut metagenome; human gut
235
308
+
His
GTG
[ENA]
¢þ
>WENV183003508
OLCS01006609
[OLCS] human gut metagenome; human gut
245
321
+
Asp
GTC
[ENA]
¢þ
>WENV183003502
OLCS01006260
[OLCS] human gut metagenome; human gut
249
324
+
Val
GAC
[ENA]
¢þ
>WENV183003438
OLCS01000717
[OLCS] human gut metagenome; human gut
253
179
-
Arg
TCT
[ENA]
¢þ
>WENV183003503
OLCS01006408
[OLCS] human gut metagenome; human gut
254
179
-
Thr
TGT
[ENA]
¢þ
>WENV183003435
OLCS01000598
[OLCS] human gut metagenome; human gut
273
347
+
Ala
TGC
[ENA]
¢þ
>WENV183003440
OLCS01000743
[OLCS] human gut metagenome; human gut
280
193
-
Ser
GCT
[ENA]
¢þ
>WENV183003516
OLCS01007695
[OLCS] human gut metagenome; human gut
286
362
+
Ile2
CAT
[ENA]
¢þ
>WENV183003482
OLCS01003260
[OLCS] human gut metagenome; human gut
313
387
+
Thr
TGT
[ENA]
¢þ
>WENV183003517
OLCS01008273
[OLCS] human gut metagenome; human gut
329
420
+
Ser
CGA
[ENA]
¢þ
>WENV183003509
OLCS01006609
[OLCS] human gut metagenome; human gut
330
405
+
Thr
TGT
[ENA]
¢þ
>WENV183003479
OLCS01003192
[OLCS] human gut metagenome; human gut
361
274
-
Ser
TGA
[ENA]
¢þ
>WENV183003495
OLCS01005054
[OLCS] human gut metagenome; human gut
364
289
-
Thr
CGT
[ENA]
¢þ
>WENV183003511
OLCS01007033
[OLCS] human gut metagenome; human gut
373
458
+
Leu
CAA
[ENA]
¢þ
>WENV183003455
OLCS01001356
[OLCS] human gut metagenome; human gut
378
303
-
Phe
GAA
[ENA]
¢þ
>WENV183003514
OLCS01007473
[OLCS] human gut metagenome; human gut
382
457
+
His
GTG
[ENA]
¢þ
>WENV183003498
OLCS01005596
[OLCS] human gut metagenome; human gut
391
463
+
Gln
CTG
[ENA]
¢þ
>WENV183003518
OLCS01008327
[OLCS] human gut metagenome; human gut
391
466
+
Asn
GTT
[ENA]
¢þ
>WENV183003431
OLCS01000471
[OLCS] human gut metagenome; human gut
392
463
+
Gln
CTG
[ENA]
¢þ
>WENV183003512
OLCS01007118
[OLCS] human gut metagenome; human gut
405
329
-
Arg
ACG
[ENA]
¢þ
>WENV183003484
OLCS01003622
[OLCS] human gut metagenome; human gut
412
486
+
Gly
TCC
[ENA]
¢þ
>WENV183003510
OLCS01006609
[OLCS] human gut metagenome; human gut
421
504
+
Leu
TAG
[ENA]
¢þ
>WENV183003513
OLCS01007397
[OLCS] human gut metagenome; human gut
434
361
-
Gly
GCC
[ENA]
¢þ
>WENV183003486
OLCS01003785
[OLCS] human gut metagenome; human gut
462
387
-
Val
TAC
[ENA]
¢þ
>WENV183003461
OLCS01001719
[OLCS] human gut metagenome; human gut
485
412
-
fMet
CAT
[ENA]
¢þ
>WENV183003490
OLCS01004114
[OLCS] human gut metagenome; human gut
490
566
+
His
GTG
[ENA]
¢þ
>WENV183003452
OLCS01001207
[OLCS] human gut metagenome; human gut
493
578
+
Tyr
GTA
[ENA]
¢þ
>WENV183003501
OLCS01005760
[OLCS] human gut metagenome; human gut
495
569
+
Pro
TGG
[ENA]
¢þ
>WENV183003499
OLCS01005596
[OLCS] human gut metagenome; human gut
497
571
+
Pro
CGG
[ENA]
¢þ
>WENV183003506
OLCS01006558
[OLCS] human gut metagenome; human gut
533
446
-
Ser
TGA
[ENA]
¢þ
>WENV183003474
OLCS01002926
[OLCS] human gut metagenome; human gut
539
614
+
Trp
CCA
[ENA]
¢þ
>WENV183003456
OLCS01001469
[OLCS] human gut metagenome; human gut
544
617
+
Gly
GCC
[ENA]
¢þ
>WENV183003489
OLCS01003982
[OLCS] human gut metagenome; human gut
569
493
-
Asn
GTT
[ENA]
¢þ
>WENV183003449
OLCS01001115
[OLCS] human gut metagenome; human gut
594
668
+
Thr
TGT
[ENA]
¢þ
>WENV183003491
OLCS01004149
[OLCS] human gut metagenome; human gut
610
702
+
Ser
TGA
[ENA]
¢þ
>WENV183003494
OLCS01004943
[OLCS] human gut metagenome; human gut
617
692
+
Lys
TTT
[ENA]
¢þ
>WENV183003457
OLCS01001469
[OLCS] human gut metagenome; human gut
633
718
+
Leu
TAA
[ENA]
¢þ
>WENV183003469
OLCS01002371
[OLCS] human gut metagenome; human gut
635
710
+
Gly
GCC
[ENA]
¢þ
>WENV183003416
OLCS01000056
[OLCS] human gut metagenome; human gut
648
576
-
Arg
CCG
[ENA]
¢þ
>WENV183003453
OLCS01001207
[OLCS] human gut metagenome; human gut
679
753
+
Thr
GGT
[ENA]
¢þ
>WENV183003483
OLCS01003590
[OLCS] human gut metagenome; human gut
710
784
+
Glu
CTC
[ENA]
¢þ
>WENV183003493
OLCS01004176
[OLCS] human gut metagenome; human gut
716
643
-
Gly
TCC
[ENA]
¢þ
>WENV183003470
OLCS01002371
[OLCS] human gut metagenome; human gut
740
814
+
Cys
GCA
[ENA]
¢þ
>WENV183003444
OLCS01000952
[OLCS] human gut metagenome; human gut
755
829
+
Arg
CCG
[ENA]
¢þ
>WENV183003468
OLCS01002344
[OLCS] human gut metagenome; human gut
757
830
+
fMet
CAT
[ENA]
¢þ
>WENV183003458
OLCS01001685
[OLCS] human gut metagenome; human gut
817
891
+
Gly
GCC
[ENA]
¢þ
>WENV183003448
OLCS01001114
[OLCS] human gut metagenome; human gut
822
748
-
Ile2
CAT
[ENA]
¢þ
>WENV183003464
OLCS01001859
[OLCS] human gut metagenome; human gut
822
906
+
Leu
CAA
[ENA]
¢þ
>WENV183003437
OLCS01000706
[OLCS] human gut metagenome; human gut
865
794
-
Gln
TTG
[ENA]
¢þ
>WENV183003467
OLCS01002014
[OLCS] human gut metagenome; human gut
874
781
-
Ser
GCT
[ENA]
¢þ
>WENV183003459
OLCS01001685
[OLCS] human gut metagenome; human gut
895
968
+
Cys
GCA
[ENA]
¢þ
>WENV183003466
OLCS01002014
[OLCS] human gut metagenome; human gut
994
906
-
Ser
CGA
[ENA]
¢þ
>WENV183003460
OLCS01001685
[OLCS] human gut metagenome; human gut
999
1087
+
Leu
TAA
[ENA]
¢þ
>WENV183003447
OLCS01001056
[OLCS] human gut metagenome; human gut
1034
958
-
Met
CAT
[ENA]
¢þ
>WENV183003439
OLCS01000743
[OLCS] human gut metagenome; human gut
1034
962
-
Cys
GCA
[ENA]
¢þ
>WENV183003424
OLCS01000198
[OLCS] human gut metagenome; human gut
1047
974
-
Thr
CGT
[ENA]
¢þ
>WENV183003427
OLCS01000276
[OLCS] human gut metagenome; human gut
1179
1091
-
Ser
GGA
[ENA]
¢þ
>WENV183003428
OLCS01000351
[OLCS] human gut metagenome; human gut
1182
1264
+
Leu
TAG
[ENA]
¢þ
>WENV183003454
OLCS01001244
[OLCS] human gut metagenome; human gut
1216
1142
-
Ala
GGC
[ENA]
¢þ
>WENV183003443
OLCS01000927
[OLCS] human gut metagenome; human gut
1306
1229
-
Gln
TTG
[ENA]
¢þ
>WENV183003433
OLCS01000534
[OLCS] human gut metagenome; human gut
1366
1293
-
Phe
GAA
[ENA]
¢þ
>WENV183003445
OLCS01000954
[OLCS] human gut metagenome; human gut
1410
1335
-
Glu
TTC
[ENA]
¢þ
>WENV183003451
OLCS01001205
[OLCS] human gut metagenome; human gut
1436
1507
+
Cys
GCA
[ENA]
¢þ
>WENV183003410
OLCS01000006
[OLCS] human gut metagenome; human gut
1469
1552
+
Tyr
GTA
[ENA]
¢þ
>WENV183003450
OLCS01001160
[OLCS] human gut metagenome; human gut
1516
1592
+
Pro
CGG
[ENA]
¢þ
>WENV183003432
OLCS01000534
[OLCS] human gut metagenome; human gut
1545
1618
+
Pro
CGG
[ENA]
¢þ
>WENV183003411
OLCS01000006
[OLCS] human gut metagenome; human gut
1670
1742
+
Thr
GGT
[ENA]
¢þ
>WENV183003446
OLCS01001050
[OLCS] human gut metagenome; human gut
1745
1670
-
Pro
GGG
[ENA]
¢þ
>WENV183003436
OLCS01000669
[OLCS] human gut metagenome; human gut
1777
1692
-
Ser
TGA
[ENA]
¢þ
>WENV183003430
OLCS01000376
[OLCS] human gut metagenome; human gut
2147
2221
+
Asp
GTC
[ENA]
¢þ
>WENV183003426
OLCS01000274
[OLCS] human gut metagenome; human gut
2198
2123
-
Ala
TGC
[ENA]
¢þ
>WENV183003425
OLCS01000274
[OLCS] human gut metagenome; human gut
2325
2249
-
Ile
GAT
[ENA]
¢þ
>WENV183003420
OLCS01000120
[OLCS] human gut metagenome; human gut
2506
2431
-
His
GTG
[ENA]
¢þ
>WENV183003414
OLCS01000028
[OLCS] human gut metagenome; human gut
2659
2735
+
Val
TAC
[ENA]
¢þ
>WENV183003422
OLCS01000152
[OLCS] human gut metagenome; human gut
2878
2951
+
Lys
TTT
[ENA]
¢þ
>WENV183003412
OLCS01000006
[OLCS] human gut metagenome; human gut
3035
3108
+
Trp
CCA
[ENA]
¢þ
>WENV183003419
OLCS01000111
[OLCS] human gut metagenome; human gut
3204
3116
-
Ser
GGA
[ENA]
¢þ
>WENV183003421
OLCS01000139
[OLCS] human gut metagenome; human gut
3379
3306
-
Phe
GAA
[ENA]
¢þ
>WENV183003423
OLCS01000165
[OLCS] human gut metagenome; human gut
3528
3603
+
Lys
TTT
[ENA]
¢þ
>WENV183003418
OLCS01000102
[OLCS] human gut metagenome; human gut
3711
3783
+
fMet
CAT
[ENA]
¢þ
>WENV183003415
OLCS01000040
[OLCS] human gut metagenome; human gut
6945
6873
-
Arg
CCT
[ENA]
¢þ
>WENV183003413
OLCS01000013
[OLCS] human gut metagenome; human gut
7280
7208
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK