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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLCZ] human gut metagenome; human gut
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183005302
OLCZ01004410
[OLCZ] human gut metagenome; human gut
72
147
+
Gly
GCC
[ENA]
¢þ
>WENV183005311
OLCZ01006558
[OLCZ] human gut metagenome; human gut
91
167
+
Pro
TGG
[ENA]
¢þ
>WENV183005301
OLCZ01004317
[OLCZ] human gut metagenome; human gut
102
178
+
Asp
GTC
[ENA]
¢þ
>WENV183005298
OLCZ01003143
[OLCZ] human gut metagenome; human gut
105
13
-
Ser
GCT
[ENA]
¢þ
>WENV183005296
OLCZ01001893
[OLCZ] human gut metagenome; human gut
138
65
-
Asn
GTT
[ENA]
¢þ
>WENV183005314
OLCZ01007315
[OLCZ] human gut metagenome; human gut
140
214
+
His
GTG
[ENA]
¢þ
>WENV183005278
OLCZ01000299
[OLCZ] human gut metagenome; human gut
156
82
-
Asn
GTT
[ENA]
¢þ
>WENV183005286
OLCZ01000717
[OLCZ] human gut metagenome; human gut
162
248
+
Leu
GAG
[ENA]
¢þ
>WENV183005308
OLCZ01005716
[OLCZ] human gut metagenome; human gut
182
257
+
Phe
GAA
[ENA]
¢þ
>WENV183005312
OLCZ01006616
[OLCZ] human gut metagenome; human gut
201
274
+
Gly
CCC
[ENA]
¢þ
>WENV183005303
OLCZ01004410
[OLCZ] human gut metagenome; human gut
246
318
+
Thr
TGT
[ENA]
¢þ
>WENV183005295
OLCZ01001893
[OLCZ] human gut metagenome; human gut
249
175
-
Ala
TGC
[ENA]
¢þ
>WENV183005281
OLCZ01000362
[OLCZ] human gut metagenome; human gut
264
339
+
Thr
TGT
[ENA]
¢þ
>WENV183005310
OLCZ01006321
[OLCZ] human gut metagenome; human gut
295
220
-
Pro
TGG
[ENA]
¢þ
>WENV183005309
OLCZ01005895
[OLCZ] human gut metagenome; human gut
305
231
-
Ala
GGC
[ENA]
¢þ
>WENV183005313
OLCZ01007027
[OLCZ] human gut metagenome; human gut
328
402
+
Arg
TCT
[ENA]
¢þ
>WENV183005297
OLCZ01002372
[OLCZ] human gut metagenome; human gut
328
404
+
Arg
ACG
[ENA]
¢þ
>WENV183005304
OLCZ01004410
[OLCZ] human gut metagenome; human gut
343
418
+
fMet
CAT
[ENA]
¢þ
>WENV183005294
OLCZ01001893
[OLCZ] human gut metagenome; human gut
346
272
-
Ile
GAT
[ENA]
¢þ
>WENV183005282
OLCZ01000362
[OLCZ] human gut metagenome; human gut
348
432
+
Tyr
GTA
[ENA]
¢þ
>WENV183005299
OLCZ01004124
[OLCZ] human gut metagenome; human gut
370
441
+
Gln
CTG
[ENA]
¢þ
>WENV183005268
OLCZ01000073
[OLCZ] human gut metagenome; human gut
383
466
+
Tyr
GTA
[ENA]
¢þ
>WENV183005307
OLCZ01005613
[OLCZ] human gut metagenome; human gut
423
348
-
Ala
TGC
[ENA]
¢þ
>WENV183005300
OLCZ01004218
[OLCZ] human gut metagenome; human gut
432
508
+
Arg
TCT
[ENA]
¢þ
>WENV183005305
OLCZ01004410
[OLCZ] human gut metagenome; human gut
437
511
+
Phe
GAA
[ENA]
¢þ
>WENV183005288
OLCZ01001356
[OLCZ] human gut metagenome; human gut
542
470
-
Cys
GCA
[ENA]
¢þ
>WENV183005290
OLCZ01001633
[OLCZ] human gut metagenome; human gut
543
628
+
Ser
TGA
[ENA]
¢þ
>WENV183005306
OLCZ01004410
[OLCZ] human gut metagenome; human gut
546
618
+
Lys
TTT
[ENA]
¢þ
>WENV183005283
OLCZ01000362
[OLCZ] human gut metagenome; human gut
549
623
+
Gly
TCC
[ENA]
¢þ
>WENV183005269
OLCZ01000073
[OLCZ] human gut metagenome; human gut
558
630
+
Thr
GGT
[ENA]
¢þ
>WENV183005284
OLCZ01000362
[OLCZ] human gut metagenome; human gut
630
705
+
Thr
GGT
[ENA]
¢þ
>WENV183005291
OLCZ01001788
[OLCZ] human gut metagenome; human gut
792
866
+
Thr
TGT
[ENA]
¢þ
>WENV183005292
OLCZ01001845
[OLCZ] human gut metagenome; human gut
845
930
+
Ser
GCT
[ENA]
¢þ
>WENV183005289
OLCZ01001521
[OLCZ] human gut metagenome; human gut
884
957
+
Lys
TTT
[ENA]
¢þ
>WENV183005293
OLCZ01001845
[OLCZ] human gut metagenome; human gut
937
1011
+
Arg
ACG
[ENA]
¢þ
>WENV183005274
OLCZ01000261
[OLCZ] human gut metagenome; human gut
1006
922
-
Leu
CAA
[ENA]
¢þ
>WENV183005287
OLCZ01000718
[OLCZ] human gut metagenome; human gut
1054
982
-
Glu
TTC
[ENA]
¢þ
>WENV183005275
OLCZ01000264
[OLCZ] human gut metagenome; human gut
1114
1202
+
Ser
GGA
[ENA]
¢þ
>WENV183005273
OLCZ01000162
[OLCZ] human gut metagenome; human gut
1371
1297
-
Ala
TGC
[ENA]
¢þ
>WENV183005272
OLCZ01000162
[OLCZ] human gut metagenome; human gut
1476
1400
-
Ile
GAT
[ENA]
¢þ
>WENV183005277
OLCZ01000279
[OLCZ] human gut metagenome; human gut
1593
1508
-
Leu
TAA
[ENA]
¢þ
>WENV183005285
OLCZ01000409
[OLCZ] human gut metagenome; human gut
1643
1570
-
Phe
GAA
[ENA]
¢þ
>WENV183005280
OLCZ01000352
[OLCZ] human gut metagenome; human gut
1669
1741
+
Arg
CCT
[ENA]
¢þ
>WENV183005276
OLCZ01000279
[OLCZ] human gut metagenome; human gut
1682
1609
-
Gly
GCC
[ENA]
¢þ
>WENV183005270
OLCZ01000073
[OLCZ] human gut metagenome; human gut
1918
1991
+
Trp
CCA
[ENA]
¢þ
>WENV183005279
OLCZ01000342
[OLCZ] human gut metagenome; human gut
2017
1945
-
Arg
CCG
[ENA]
¢þ
>WENV183005264
OLCZ01000021
[OLCZ] human gut metagenome; human gut
2494
2569
+
Glu
TTC
[ENA]
¢þ
>WENV183005271
OLCZ01000129
[OLCZ] human gut metagenome; human gut
2774
2700
-
Ile2
CAT
[ENA]
¢þ
>WENV183005265
OLCZ01000023
[OLCZ] human gut metagenome; human gut
5474
5547
+
Lys
CTT
[ENA]
¢þ
>WENV183005266
OLCZ01000023
[OLCZ] human gut metagenome; human gut
5579
5652
+
Lys
CTT
[ENA]
¢þ
>WENV183005267
OLCZ01000028
[OLCZ] human gut metagenome; human gut
5597
5668
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK