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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLDQ] human gut metagenome; human gut
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183009367
OLDQ01000281
[OLDQ] human gut metagenome; human gut
47
123
+
Arg
CCG
[ENA]
¢þ
>WENV183009395
OLDQ01001808
[OLDQ] human gut metagenome; human gut
56
131
+
Arg
ACG
[ENA]
¢þ
>WENV183009383
OLDQ01000953
[OLDQ] human gut metagenome; human gut
74
149
+
Val
TAC
[ENA]
¢þ
>WENV183009404
OLDQ01003815
[OLDQ] human gut metagenome; human gut
77
150
+
Gln
CTG
[ENA]
¢þ
>WENV183009388
OLDQ01001153
[OLDQ] human gut metagenome; human gut
109
185
+
Met
CAT
[ENA]
¢þ
>WENV183009396
OLDQ01002425
[OLDQ] human gut metagenome; human gut
121
196
+
Ile2
CAT
[ENA]
¢þ
>WENV183009403
OLDQ01003576
[OLDQ] human gut metagenome; human gut
127
38
-
Ser
GCT
[ENA]
¢þ
>WENV183009399
OLDQ01002500
[OLDQ] human gut metagenome; human gut
150
74
-
Arg
ACG
[ENA]
¢þ
>WENV183009384
OLDQ01000953
[OLDQ] human gut metagenome; human gut
155
231
+
Asp
GTC
[ENA]
¢þ
>WENV183009364
OLDQ01000112
[OLDQ] human gut metagenome; human gut
171
98
-
Cys
GCA
[ENA]
¢þ
>WENV183009369
OLDQ01000478
[OLDQ] human gut metagenome; human gut
179
103
-
Asn
GTT
[ENA]
¢þ
>WENV183009368
OLDQ01000438
[OLDQ] human gut metagenome; human gut
179
270
+
Ser
CGA
[ENA]
¢þ
>WENV183009391
OLDQ01001180
[OLDQ] human gut metagenome; human gut
181
106
-
Thr
GGT
[ENA]
¢þ
>WENV183009394
OLDQ01001683
[OLDQ] human gut metagenome; human gut
183
104
-
Leu
CAA
[ENA]
¢þ
>WENV183009379
OLDQ01000932
[OLDQ] human gut metagenome; human gut
193
121
-
Ile2
CAT
[ENA]
¢þ
>WENV183009400
OLDQ01002842
[OLDQ] human gut metagenome; human gut
196
282
+
Leu
CAA
[ENA]
¢þ
>WENV183009392
OLDQ01001290
[OLDQ] human gut metagenome; human gut
208
136
-
Pro
TGG
[ENA]
¢þ
>WENV183009385
OLDQ01000953
[OLDQ] human gut metagenome; human gut
238
313
+
Phe
GAA
[ENA]
¢þ
>WENV183009402
OLDQ01003576
[OLDQ] human gut metagenome; human gut
246
159
-
Ser
TGA
[ENA]
¢þ
>WENV183009363
OLDQ01000112
[OLDQ] human gut metagenome; human gut
246
175
-
Glu
TTC
[ENA]
¢þ
>WENV183009378
OLDQ01000872
[OLDQ] human gut metagenome; human gut
266
192
-
Lys
CTT
[ENA]
¢þ
>WENV183009389
OLDQ01001153
[OLDQ] human gut metagenome; human gut
278
352
+
Glu
TTC
[ENA]
¢þ
>WENV183009371
OLDQ01000566
[OLDQ] human gut metagenome; human gut
294
369
+
Pro
GGG
[ENA]
¢þ
>WENV183009362
OLDQ01000112
[OLDQ] human gut metagenome; human gut
332
261
-
Asn
GTT
[ENA]
¢þ
>WENV183009377
OLDQ01000825
[OLDQ] human gut metagenome; human gut
334
408
+
Gly
TCC
[ENA]
¢þ
>WENV183009386
OLDQ01000953
[OLDQ] human gut metagenome; human gut
345
420
+
Gly
GCC
[ENA]
¢þ
>WENV183009401
OLDQ01002999
[OLDQ] human gut metagenome; human gut
362
448
+
Ser
TGA
[ENA]
¢þ
>WENV183009397
OLDQ01002494
[OLDQ] human gut metagenome; human gut
394
468
+
Pro
CGG
[ENA]
¢þ
>WENV183009390
OLDQ01001153
[OLDQ] human gut metagenome; human gut
399
475
+
Val
CAC
[ENA]
¢þ
>WENV183009387
OLDQ01000953
[OLDQ] human gut metagenome; human gut
449
523
+
Cys
GCA
[ENA]
¢þ
>WENV183009376
OLDQ01000812
[OLDQ] human gut metagenome; human gut
468
541
+
Trp
CCA
[ENA]
¢þ
>WENV183009361
OLDQ01000024
[OLDQ] human gut metagenome; human gut
470
395
-
Lys
CTT
[ENA]
¢þ
>WENV183009398
OLDQ01002494
[OLDQ] human gut metagenome; human gut
474
545
+
Gly
TCC
[ENA]
¢þ
>WENV183009393
OLDQ01001327
[OLDQ] human gut metagenome; human gut
524
597
+
Lys
TTT
[ENA]
¢þ
>WENV183009370
OLDQ01000481
[OLDQ] human gut metagenome; human gut
545
620
+
fMet
CAT
[ENA]
¢þ
>WENV183009382
OLDQ01000933
[OLDQ] human gut metagenome; human gut
555
472
-
Tyr
GTA
[ENA]
¢þ
>WENV183009375
OLDQ01000782
[OLDQ] human gut metagenome; human gut
633
557
-
Ile
GAT
[ENA]
¢þ
>WENV183009381
OLDQ01000933
[OLDQ] human gut metagenome; human gut
656
584
-
Thr
TGT
[ENA]
¢þ
>WENV183009366
OLDQ01000240
[OLDQ] human gut metagenome; human gut
665
737
+
Ala
TGC
[ENA]
¢þ
>WENV183009372
OLDQ01000646
[OLDQ] human gut metagenome; human gut
676
594
-
Leu
TAG
[ENA]
¢þ
>WENV183009374
OLDQ01000782
[OLDQ] human gut metagenome; human gut
712
637
-
Ala
TGC
[ENA]
¢þ
>WENV183009380
OLDQ01000933
[OLDQ] human gut metagenome; human gut
746
672
-
Val
TAC
[ENA]
¢þ
>WENV183009373
OLDQ01000674
[OLDQ] human gut metagenome; human gut
800
728
-
Glu
TTC
[ENA]
¢þ
>WENV183009365
OLDQ01000216
[OLDQ] human gut metagenome; human gut
1204
1275
+
Gln
TTG
[ENA]
¢þ
>WENV183009360
OLDQ01000007
[OLDQ] human gut metagenome; human gut
3789
3715
-
Ala
TGC
[ENA]
¢þ
>WENV183009359
OLDQ01000007
[OLDQ] human gut metagenome; human gut
3880
3806
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK