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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLDT] human gut metagenome; human gut
HIT:
65 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183010103
OLDT01005076
[OLDT] human gut metagenome; human gut
3
86
+
Ser
TGA
[ENA]
¢þ
>WENV183010109
OLDT01006449
[OLDT] human gut metagenome; human gut
12
87
+
His
GTG
[ENA]
¢þ
>WENV183010052
OLDT01000054
[OLDT] human gut metagenome; human gut
45
117
+
Thr
GGT
[ENA]
¢þ
>WENV183010105
OLDT01005287
[OLDT] human gut metagenome; human gut
64
138
+
Asn
GTT
[ENA]
¢þ
>WENV183010064
OLDT01000471
[OLDT] human gut metagenome; human gut
68
143
+
Ile
GAT
[ENA]
¢þ
>WENV183010104
OLDT01005076
[OLDT] human gut metagenome; human gut
92
180
+
Ser
GCT
[ENA]
¢þ
>WENV183010110
OLDT01006449
[OLDT] human gut metagenome; human gut
108
194
+
Leu
CAG
[ENA]
¢þ
>WENV183010097
OLDT01003894
[OLDT] human gut metagenome; human gut
110
36
-
Val
TAC
[ENA]
¢þ
>WENV183010068
OLDT01000703
[OLDT] human gut metagenome; human gut
116
42
-
Asn
GTT
[ENA]
¢þ
>WENV183010087
OLDT01003115
[OLDT] human gut metagenome; human gut
131
203
+
Thr
CGT
[ENA]
¢þ
>WENV183010078
OLDT01001702
[OLDT] human gut metagenome; human gut
139
214
+
Glu
TTC
[ENA]
¢þ
>WENV183010065
OLDT01000471
[OLDT] human gut metagenome; human gut
160
234
+
Ala
TGC
[ENA]
¢þ
>WENV183010080
OLDT01001813
[OLDT] human gut metagenome; human gut
165
89
-
fMet
CAT
[ENA]
¢þ
>WENV183010077
OLDT01001647
[OLDT] human gut metagenome; human gut
166
241
+
Glu
TTC
[ENA]
¢þ
>WENV183010106
OLDT01006073
[OLDT] human gut metagenome; human gut
171
245
+
Thr
TGT
[ENA]
¢þ
>WENV183010071
OLDT01001259
[OLDT] human gut metagenome; human gut
200
276
+
Val
TAC
[ENA]
¢þ
>WENV183010101
OLDT01004478
[OLDT] human gut metagenome; human gut
208
136
-
Glu
CTC
[ENA]
¢þ
>WENV183010085
OLDT01002288
[OLDT] human gut metagenome; human gut
212
287
+
Trp
CCA
[ENA]
¢þ
>WENV183010096
OLDT01003894
[OLDT] human gut metagenome; human gut
214
139
-
Asp
GTC
[ENA]
¢þ
>WENV183010066
OLDT01000471
[OLDT] human gut metagenome; human gut
271
344
+
Asn
GTT
[ENA]
¢þ
>WENV183010107
OLDT01006073
[OLDT] human gut metagenome; human gut
288
371
+
Tyr
GTA
[ENA]
¢þ
>WENV183010095
OLDT01003894
[OLDT] human gut metagenome; human gut
303
229
-
Ile2
CAT
[ENA]
¢þ
>WENV183010091
OLDT01003864
[OLDT] human gut metagenome; human gut
326
399
+
Phe
GAA
[ENA]
¢þ
>WENV183010099
OLDT01004366
[OLDT] human gut metagenome; human gut
332
418
+
Leu
TAA
[ENA]
¢þ
>WENV183010090
OLDT01003850
[OLDT] human gut metagenome; human gut
338
411
+
fMet
CAT
[ENA]
¢þ
>WENV183010089
OLDT01003607
[OLDT] human gut metagenome; human gut
347
271
-
Pro
CGG
[ENA]
¢þ
>WENV183010075
OLDT01001409
[OLDT] human gut metagenome; human gut
380
465
+
Ser
TGA
[ENA]
¢þ
>WENV183010094
OLDT01003894
[OLDT] human gut metagenome; human gut
406
334
-
Thr
TGT
[ENA]
¢þ
>WENV183010092
OLDT01003864
[OLDT] human gut metagenome; human gut
412
485
+
Pro
CGG
[ENA]
¢þ
>WENV183010067
OLDT01000659
[OLDT] human gut metagenome; human gut
420
493
+
Lys
CTT
[ENA]
¢þ
>WENV183010102
OLDT01005060
[OLDT] human gut metagenome; human gut
443
532
+
Ser
CGA
[ENA]
¢þ
>WENV183010054
OLDT01000062
[OLDT] human gut metagenome; human gut
445
374
-
Gln
TTG
[ENA]
¢þ
>WENV183010108
OLDT01006073
[OLDT] human gut metagenome; human gut
482
554
+
Thr
GGT
[ENA]
¢þ
>WENV183010073
OLDT01001362
[OLDT] human gut metagenome; human gut
500
584
+
Leu
CAA
[ENA]
¢þ
>WENV183010093
OLDT01003894
[OLDT] human gut metagenome; human gut
517
446
-
Glu
TTC
[ENA]
¢þ
>WENV183010084
OLDT01002146
[OLDT] human gut metagenome; human gut
533
451
-
Arg
GCG
[ENA]
¢þ
>WENV183010060
OLDT01000159
[OLDT] human gut metagenome; human gut
543
618
+
Pro
TGG
[ENA]
¢þ
>WENV183010049
OLDT01000041
[OLDT] human gut metagenome; human gut
550
475
-
Asn
GTT
[ENA]
¢þ
>WENV183010100
OLDT01004446
[OLDT] human gut metagenome; human gut
571
647
+
Arg
CCT
[ENA]
¢þ
>WENV183010061
OLDT01000159
[OLDT] human gut metagenome; human gut
622
695
+
Gly
TCC
[ENA]
¢þ
>WENV183010098
OLDT01004081
[OLDT] human gut metagenome; human gut
628
546
-
Leu
TAG
[ENA]
¢þ
>WENV183010069
OLDT01000819
[OLDT] human gut metagenome; human gut
630
704
+
Ile2
CAT
[ENA]
¢þ
>WENV183010086
OLDT01002831
[OLDT] human gut metagenome; human gut
648
573
-
Pro
GGG
[ENA]
¢þ
>WENV183010055
OLDT01000103
[OLDT] human gut metagenome; human gut
651
726
+
Val
TAC
[ENA]
¢þ
>WENV183010072
OLDT01001275
[OLDT] human gut metagenome; human gut
706
777
+
Gln
CTG
[ENA]
¢þ
>WENV183010056
OLDT01000103
[OLDT] human gut metagenome; human gut
733
810
+
Asp
GTC
[ENA]
¢þ
>WENV183010088
OLDT01003557
[OLDT] human gut metagenome; human gut
791
717
-
Met
CAT
[ENA]
¢þ
>WENV183010082
OLDT01001900
[OLDT] human gut metagenome; human gut
813
884
+
Gln
CTG
[ENA]
¢þ
>WENV183010083
OLDT01002118
[OLDT] human gut metagenome; human gut
838
754
-
Leu
CAG
[ENA]
¢þ
>WENV183010079
OLDT01001812
[OLDT] human gut metagenome; human gut
866
940
+
Glu
TTC
[ENA]
¢þ
>WENV183010081
OLDT01001849
[OLDT] human gut metagenome; human gut
975
1059
+
Ser
GGA
[ENA]
¢þ
>WENV183010074
OLDT01001378
[OLDT] human gut metagenome; human gut
979
895
-
Leu
AAG
[ENA]
¢þ
>WENV183010076
OLDT01001607
[OLDT] human gut metagenome; human gut
1044
972
-
Arg
CCT
[ENA]
¢þ
>WENV183010070
OLDT01001122
[OLDT] human gut metagenome; human gut
1233
1308
+
Thr
TGT
[ENA]
¢þ
>WENV183010053
OLDT01000054
[OLDT] human gut metagenome; human gut
1410
1483
+
Trp
CCA
[ENA]
¢þ
>WENV183010051
OLDT01000049
[OLDT] human gut metagenome; human gut
1572
1498
-
Ala
TGC
[ENA]
¢þ
>WENV183010050
OLDT01000049
[OLDT] human gut metagenome; human gut
1663
1589
-
Ile
GAT
[ENA]
¢þ
>WENV183010057
OLDT01000110
[OLDT] human gut metagenome; human gut
1873
1949
+
Arg
CCT
[ENA]
¢þ
>WENV183010059
OLDT01000114
[OLDT] human gut metagenome; human gut
2011
1926
-
Leu
TAA
[ENA]
¢þ
>WENV183010058
OLDT01000114
[OLDT] human gut metagenome; human gut
2100
2027
-
Gly
GCC
[ENA]
¢þ
>WENV183010062
OLDT01000159
[OLDT] human gut metagenome; human gut
2527
2602
+
Thr
TGT
[ENA]
¢þ
>WENV183010063
OLDT01000159
[OLDT] human gut metagenome; human gut
2607
2681
+
Glu
TTC
[ENA]
¢þ
>WENV183010046
OLDT01000017
[OLDT] human gut metagenome; human gut
3946
4033
+
Ser
GCT
[ENA]
¢þ
>WENV183010047
OLDT01000031
[OLDT] human gut metagenome; human gut
3984
4060
+
Pro
TGG
[ENA]
¢þ
>WENV183010048
OLDT01000031
[OLDT] human gut metagenome; human gut
4064
4138
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK