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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLEK] human gut metagenome; human gut
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183014711
OLEK01002987
[OLEK] human gut metagenome; human gut
41
116
+
Trp
CCA
[ENA]
¢þ
>WENV183014702
OLEK01001472
[OLEK] human gut metagenome; human gut
49
123
+
Pro
GGG
[ENA]
¢þ
>WENV183014709
OLEK01002623
[OLEK] human gut metagenome; human gut
89
165
+
fMet
CAT
[ENA]
¢þ
>WENV183014697
OLEK01000903
[OLEK] human gut metagenome; human gut
98
28
-
Gly
TCC
[ENA]
¢þ
>WENV183014692
OLEK01000650
[OLEK] human gut metagenome; human gut
103
179
+
Asp
GTC
[ENA]
¢þ
>WENV183014701
OLEK01001385
[OLEK] human gut metagenome; human gut
129
216
+
Ser
TGA
[ENA]
¢þ
>WENV183014706
OLEK01002012
[OLEK] human gut metagenome; human gut
144
219
+
Ile2
CAT
[ENA]
¢þ
>WENV183014696
OLEK01000903
[OLEK] human gut metagenome; human gut
175
100
-
Asp
GTC
[ENA]
¢þ
>WENV183014689
OLEK01000371
[OLEK] human gut metagenome; human gut
180
256
+
Val
GAC
[ENA]
¢þ
>WENV183014713
OLEK01003625
[OLEK] human gut metagenome; human gut
187
259
+
Val
GAC
[ENA]
¢þ
>WENV183014700
OLEK01001333
[OLEK] human gut metagenome; human gut
227
143
-
Leu
CAA
[ENA]
¢þ
>WENV183014677
OLEK01000020
[OLEK] human gut metagenome; human gut
244
319
+
Phe
GAA
[ENA]
¢þ
>WENV183014695
OLEK01000903
[OLEK] human gut metagenome; human gut
252
178
-
Val
TAC
[ENA]
¢þ
>WENV183014705
OLEK01001777
[OLEK] human gut metagenome; human gut
259
184
-
Lys
TTT
[ENA]
¢þ
>WENV183014690
OLEK01000371
[OLEK] human gut metagenome; human gut
261
337
+
Val
GAC
[ENA]
¢þ
>WENV183014714
OLEK01003625
[OLEK] human gut metagenome; human gut
289
362
+
Val
CAC
[ENA]
¢þ
>WENV183014712
OLEK01003203
[OLEK] human gut metagenome; human gut
308
232
-
Arg
TCT
[ENA]
¢þ
>WENV183014707
OLEK01002012
[OLEK] human gut metagenome; human gut
320
396
+
Arg
TCT
[ENA]
¢þ
>WENV183014710
OLEK01002981
[OLEK] human gut metagenome; human gut
350
425
+
Thr
CGT
[ENA]
¢þ
>WENV183014698
OLEK01000971
[OLEK] human gut metagenome; human gut
364
275
-
Ser
CGA
[ENA]
¢þ
>WENV183014704
OLEK01001777
[OLEK] human gut metagenome; human gut
364
278
-
Leu
TAA
[ENA]
¢þ
>WENV183014715
OLEK01003625
[OLEK] human gut metagenome; human gut
386
459
+
Ala
GGC
[ENA]
¢þ
>WENV183014703
OLEK01001777
[OLEK] human gut metagenome; human gut
444
369
-
Gly
GCC
[ENA]
¢þ
>WENV183014699
OLEK01001272
[OLEK] human gut metagenome; human gut
611
536
-
Asn
GTT
[ENA]
¢þ
>WENV183014708
OLEK01002061
[OLEK] human gut metagenome; human gut
686
611
-
Ile2
CAT
[ENA]
¢þ
>WENV183014686
OLEK01000337
[OLEK] human gut metagenome; human gut
695
770
+
Val
TAC
[ENA]
¢þ
>WENV183014687
OLEK01000337
[OLEK] human gut metagenome; human gut
774
849
+
Lys
TTT
[ENA]
¢þ
>WENV183014693
OLEK01000697
[OLEK] human gut metagenome; human gut
919
1005
+
Leu
CAG
[ENA]
¢þ
>WENV183014694
OLEK01000697
[OLEK] human gut metagenome; human gut
1048
1124
+
Pro
TGG
[ENA]
¢þ
>WENV183014681
OLEK01000086
[OLEK] human gut metagenome; human gut
1505
1419
-
Leu
GAG
[ENA]
¢þ
>WENV183014691
OLEK01000645
[OLEK] human gut metagenome; human gut
1694
1607
-
Ser
GGA
[ENA]
¢þ
>WENV183014688
OLEK01000365
[OLEK] human gut metagenome; human gut
1869
1963
+
SeC
TCA
[ENA]
¢þ
>WENV183014685
OLEK01000118
[OLEK] human gut metagenome; human gut
1975
1900
-
Thr
GGT
[ENA]
¢þ
>WENV183014684
OLEK01000118
[OLEK] human gut metagenome; human gut
2056
1982
-
Gly
TCC
[ENA]
¢þ
>WENV183014683
OLEK01000118
[OLEK] human gut metagenome; human gut
2257
2173
-
Tyr
GTA
[ENA]
¢þ
>WENV183014682
OLEK01000118
[OLEK] human gut metagenome; human gut
2341
2266
-
Thr
TGT
[ENA]
¢þ
>WENV183014679
OLEK01000038
[OLEK] human gut metagenome; human gut
3390
3315
-
Glu
TTC
[ENA]
¢þ
>WENV183014680
OLEK01000067
[OLEK] human gut metagenome; human gut
3680
3764
+
Tyr
GTA
[ENA]
¢þ
>WENV183014678
OLEK01000035
[OLEK] human gut metagenome; human gut
4124
4050
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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