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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLEW] human gut metagenome; human gut
HIT:
75 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183017624
OLEW01004361
[OLEW] human gut metagenome; human gut
19
94
+
His
GTG
[ENA]
¢þ
>WENV183017583
OLEW01000467
[OLEW] human gut metagenome; human gut
61
136
+
Thr
TGT
[ENA]
¢þ
>WENV183017591
OLEW01000743
[OLEW] human gut metagenome; human gut
62
145
+
Leu
TAG
[ENA]
¢þ
>WENV183017636
OLEW01008304
[OLEW] human gut metagenome; human gut
64
137
+
fMet
CAT
[ENA]
¢þ
>WENV183017623
OLEW01004080
[OLEW] human gut metagenome; human gut
92
4
-
Ser
GGA
[ENA]
¢þ
>WENV183017619
OLEW01002923
[OLEW] human gut metagenome; human gut
94
8
-
Ser
TGA
[ENA]
¢þ
>WENV183017592
OLEW01000775
[OLEW] human gut metagenome; human gut
111
182
+
Glu
TTC
[ENA]
¢þ
>WENV183017625
OLEW01004361
[OLEW] human gut metagenome; human gut
115
201
+
Leu
CAG
[ENA]
¢þ
>WENV183017616
OLEW01002749
[OLEW] human gut metagenome; human gut
134
59
-
Pro
TGG
[ENA]
¢þ
>WENV183017563
OLEW01000021
[OLEW] human gut metagenome; human gut
135
59
-
Pro
TGG
[ENA]
¢þ
>WENV183017584
OLEW01000467
[OLEW] human gut metagenome; human gut
145
229
+
Tyr
GTA
[ENA]
¢þ
>WENV183017564
OLEW01000035
[OLEW] human gut metagenome; human gut
164
89
-
Asp
GTC
[ENA]
¢þ
>WENV183017632
OLEW01005632
[OLEW] human gut metagenome; human gut
180
267
+
Ser
TGA
[ENA]
¢þ
>WENV183017622
OLEW01003756
[OLEW] human gut metagenome; human gut
181
268
+
Ser
GGA
[ENA]
¢þ
>WENV183017615
OLEW01002739
[OLEW] human gut metagenome; human gut
192
276
+
Ser
GGA
[ENA]
¢þ
>WENV183017578
OLEW01000214
[OLEW] human gut metagenome; human gut
217
145
-
Arg
CCT
[ENA]
¢þ
>WENV183017593
OLEW01000775
[OLEW] human gut metagenome; human gut
222
294
+
Thr
TGT
[ENA]
¢þ
>WENV183017582
OLEW01000413
[OLEW] human gut metagenome; human gut
242
326
+
Leu
CAA
[ENA]
¢þ
>WENV183017626
OLEW01004361
[OLEW] human gut metagenome; human gut
244
320
+
Pro
TGG
[ENA]
¢þ
>WENV183017631
OLEW01005533
[OLEW] human gut metagenome; human gut
249
323
+
Glu
CTC
[ENA]
¢þ
>WENV183017588
OLEW01000632
[OLEW] human gut metagenome; human gut
266
191
-
Lys
TTT
[ENA]
¢þ
>WENV183017621
OLEW01003543
[OLEW] human gut metagenome; human gut
267
338
+
Gln
TTG
[ENA]
¢þ
>WENV183017617
OLEW01002859
[OLEW] human gut metagenome; human gut
273
345
+
Glu
CTC
[ENA]
¢þ
>WENV183017608
OLEW01001356
[OLEW] human gut metagenome; human gut
282
358
+
Val
TAC
[ENA]
¢þ
>WENV183017618
OLEW01002885
[OLEW] human gut metagenome; human gut
291
217
-
Ala
GGC
[ENA]
¢þ
>WENV183017635
OLEW01007766
[OLEW] human gut metagenome; human gut
294
222
-
Thr
CGT
[ENA]
¢þ
>WENV183017611
OLEW01001710
[OLEW] human gut metagenome; human gut
295
370
+
Thr
GGT
[ENA]
¢þ
>WENV183017594
OLEW01000775
[OLEW] human gut metagenome; human gut
319
394
+
fMet
CAT
[ENA]
¢þ
>WENV183017634
OLEW01006895
[OLEW] human gut metagenome; human gut
323
238
-
Ser
TGA
[ENA]
¢þ
>WENV183017629
OLEW01005098
[OLEW] human gut metagenome; human gut
339
245
-
SeC
TCA
[ENA]
¢þ
>WENV183017585
OLEW01000467
[OLEW] human gut metagenome; human gut
346
420
+
Gly
TCC
[ENA]
¢þ
>WENV183017630
OLEW01005463
[OLEW] human gut metagenome; human gut
354
430
+
Arg
TCG
[ENA]
¢þ
>WENV183017595
OLEW01000775
[OLEW] human gut metagenome; human gut
413
487
+
Phe
GAA
[ENA]
¢þ
>WENV183017605
OLEW01001189
[OLEW] human gut metagenome; human gut
421
494
+
Pro
CGG
[ENA]
¢þ
>WENV183017606
OLEW01001323
[OLEW] human gut metagenome; human gut
422
495
+
Trp
CCA
[ENA]
¢þ
>WENV183017586
OLEW01000467
[OLEW] human gut metagenome; human gut
427
502
+
Thr
GGT
[ENA]
¢þ
>WENV183017613
OLEW01002377
[OLEW] human gut metagenome; human gut
455
525
+
Gln
CTG
[ENA]
¢þ
>WENV183017633
OLEW01005704
[OLEW] human gut metagenome; human gut
464
392
-
Glu
TTC
[ENA]
¢þ
>WENV183017596
OLEW01000775
[OLEW] human gut metagenome; human gut
522
594
+
Lys
TTT
[ENA]
¢þ
>WENV183017614
OLEW01002377
[OLEW] human gut metagenome; human gut
556
630
+
Pro
CGG
[ENA]
¢þ
>WENV183017603
OLEW01001022
[OLEW] human gut metagenome; human gut
558
485
-
Cys
GCA
[ENA]
¢þ
>WENV183017607
OLEW01001339
[OLEW] human gut metagenome; human gut
578
652
+
Met
CAT
[ENA]
¢þ
>WENV183017628
OLEW01004617
[OLEW] human gut metagenome; human gut
621
545
-
fMet
CAT
[ENA]
¢þ
>WENV183017627
OLEW01004447
[OLEW] human gut metagenome; human gut
641
565
-
Arg
TCT
[ENA]
¢þ
>WENV183017602
OLEW01001022
[OLEW] human gut metagenome; human gut
649
574
-
Phe
GAA
[ENA]
¢þ
>WENV183017580
OLEW01000226
[OLEW] human gut metagenome; human gut
649
575
-
Met
CAT
[ENA]
¢þ
>WENV183017568
OLEW01000077
[OLEW] human gut metagenome; human gut
651
724
+
Gly
GCC
[ENA]
¢þ
>WENV183017620
OLEW01003091
[OLEW] human gut metagenome; human gut
660
736
+
Arg
TCT
[ENA]
¢þ
>WENV183017604
OLEW01001136
[OLEW] human gut metagenome; human gut
694
620
-
Arg
ACG
[ENA]
¢þ
>WENV183017579
OLEW01000226
[OLEW] human gut metagenome; human gut
736
662
-
Val
TAC
[ENA]
¢þ
>WENV183017569
OLEW01000077
[OLEW] human gut metagenome; human gut
740
824
+
Leu
TAA
[ENA]
¢þ
>WENV183017590
OLEW01000691
[OLEW] human gut metagenome; human gut
743
817
+
Ile2
CAT
[ENA]
¢þ
>WENV183017601
OLEW01001022
[OLEW] human gut metagenome; human gut
751
668
-
Ser
TGA
[ENA]
¢þ
>WENV183017612
OLEW01002363
[OLEW] human gut metagenome; human gut
791
861
+
Gly
TCC
[ENA]
¢þ
>WENV183017609
OLEW01001457
[OLEW] human gut metagenome; human gut
824
751
-
Phe
GAA
[ENA]
¢þ
>WENV183017610
OLEW01001642
[OLEW] human gut metagenome; human gut
924
842
-
Leu
TAG
[ENA]
¢þ
>WENV183017597
OLEW01000847
[OLEW] human gut metagenome; human gut
972
896
-
Arg
ACG
[ENA]
¢þ
>WENV183017575
OLEW01000187
[OLEW] human gut metagenome; human gut
985
910
-
Glu
TTC
[ENA]
¢þ
>WENV183017600
OLEW01000977
[OLEW] human gut metagenome; human gut
1136
1060
-
Met
CAT
[ENA]
¢þ
>WENV183017599
OLEW01000977
[OLEW] human gut metagenome; human gut
1217
1141
-
Ala
TGC
[ENA]
¢þ
>WENV183017587
OLEW01000576
[OLEW] human gut metagenome; human gut
1258
1183
-
Phe
GAA
[ENA]
¢þ
>WENV183017598
OLEW01000977
[OLEW] human gut metagenome; human gut
1299
1223
-
Ile
GAT
[ENA]
¢þ
>WENV183017574
OLEW01000177
[OLEW] human gut metagenome; human gut
1300
1374
+
Gln
TTG
[ENA]
¢þ
>WENV183017570
OLEW01000087
[OLEW] human gut metagenome; human gut
1410
1323
-
Ser
GCT
[ENA]
¢þ
>WENV183017589
OLEW01000646
[OLEW] human gut metagenome; human gut
1481
1553
+
Arg
CCG
[ENA]
¢þ
>WENV183017573
OLEW01000144
[OLEW] human gut metagenome; human gut
1571
1499
-
Thr
GGT
[ENA]
¢þ
>WENV183017566
OLEW01000043
[OLEW] human gut metagenome; human gut
1572
1498
-
Ala
TGC
[ENA]
¢þ
>WENV183017565
OLEW01000043
[OLEW] human gut metagenome; human gut
1663
1589
-
Ile
GAT
[ENA]
¢þ
>WENV183017572
OLEW01000144
[OLEW] human gut metagenome; human gut
1772
1689
-
Tyr
GTA
[ENA]
¢þ
>WENV183017571
OLEW01000144
[OLEW] human gut metagenome; human gut
1889
1815
-
Thr
TGT
[ENA]
¢þ
>WENV183017581
OLEW01000273
[OLEW] human gut metagenome; human gut
1966
2052
+
Leu
CAA
[ENA]
¢þ
>WENV183017576
OLEW01000190
[OLEW] human gut metagenome; human gut
2009
1934
-
Trp
CCA
[ENA]
¢þ
>WENV183017577
OLEW01000192
[OLEW] human gut metagenome; human gut
2292
2365
+
Lys
CTT
[ENA]
¢þ
>WENV183017567
OLEW01000054
[OLEW] human gut metagenome; human gut
3492
3418
-
Asn
GTT
[ENA]
¢þ
>WENV183017562
OLEW01000017
[OLEW] human gut metagenome; human gut
4703
4619
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK