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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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|
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HOW TO USE
tRNA gene List
[OLFJ] human gut metagenome; human gut
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183021246
OLFJ01002543
[OLFJ] human gut metagenome; human gut
11
87
+
Val
GAC
[ENA]
¢þ
>WENV183021250
OLFJ01003232
[OLFJ] human gut metagenome; human gut
73
148
+
Thr
TGT
[ENA]
¢þ
>WENV183021247
OLFJ01002543
[OLFJ] human gut metagenome; human gut
92
168
+
Val
GAC
[ENA]
¢þ
>WENV183021252
OLFJ01003626
[OLFJ] human gut metagenome; human gut
108
183
+
Arg
CCG
[ENA]
¢þ
>WENV183021251
OLFJ01003494
[OLFJ] human gut metagenome; human gut
109
198
+
Ser
CGA
[ENA]
¢þ
>WENV183021214
OLFJ01000020
[OLFJ] human gut metagenome; human gut
164
79
-
Leu
TAA
[ENA]
¢þ
>WENV183021238
OLFJ01000652
[OLFJ] human gut metagenome; human gut
195
119
-
Arg
ACG
[ENA]
¢þ
>WENV183021213
OLFJ01000020
[OLFJ] human gut metagenome; human gut
258
187
-
Gly
GCC
[ENA]
¢þ
>WENV183021249
OLFJ01002969
[OLFJ] human gut metagenome; human gut
272
185
-
Ser
GGA
[ENA]
¢þ
>WENV183021237
OLFJ01000652
[OLFJ] human gut metagenome; human gut
292
200
-
Ser
GCT
[ENA]
¢þ
>WENV183021241
OLFJ01001226
[OLFJ] human gut metagenome; human gut
314
241
-
Gly
CCC
[ENA]
¢þ
>WENV183021212
OLFJ01000020
[OLFJ] human gut metagenome; human gut
336
261
-
Thr
TGT
[ENA]
¢þ
>WENV183021232
OLFJ01000230
[OLFJ] human gut metagenome; human gut
379
293
-
Leu
TAA
[ENA]
¢þ
>WENV183021248
OLFJ01002674
[OLFJ] human gut metagenome; human gut
426
350
-
Pro
CGG
[ENA]
¢þ
>WENV183021211
OLFJ01000020
[OLFJ] human gut metagenome; human gut
436
353
-
Leu
TAG
[ENA]
¢þ
>WENV183021231
OLFJ01000230
[OLFJ] human gut metagenome; human gut
465
392
-
Cys
GCA
[ENA]
¢þ
>WENV183021243
OLFJ01001749
[OLFJ] human gut metagenome; human gut
509
434
-
Ile2
CAT
[ENA]
¢þ
>WENV183021210
OLFJ01000020
[OLFJ] human gut metagenome; human gut
518
444
-
Lys
TTT
[ENA]
¢þ
>WENV183021245
OLFJ01002212
[OLFJ] human gut metagenome; human gut
586
511
-
Lys
TTT
[ENA]
¢þ
>WENV183021230
OLFJ01000230
[OLFJ] human gut metagenome; human gut
594
519
-
Gly
GCC
[ENA]
¢þ
>WENV183021209
OLFJ01000020
[OLFJ] human gut metagenome; human gut
594
520
-
Val
TAC
[ENA]
¢þ
>WENV183021224
OLFJ01000051
[OLFJ] human gut metagenome; human gut
624
698
+
Arg
CCT
[ENA]
¢þ
>WENV183021244
OLFJ01002212
[OLFJ] human gut metagenome; human gut
665
590
-
Val
TAC
[ENA]
¢þ
>WENV183021219
OLFJ01000032
[OLFJ] human gut metagenome; human gut
938
1013
+
Phe
GAA
[ENA]
¢þ
>WENV183021239
OLFJ01000809
[OLFJ] human gut metagenome; human gut
949
1035
+
Leu
GAG
[ENA]
¢þ
>WENV183021242
OLFJ01001278
[OLFJ] human gut metagenome; human gut
986
1061
+
Thr
CGT
[ENA]
¢þ
>WENV183021236
OLFJ01000540
[OLFJ] human gut metagenome; human gut
1024
949
-
Asn
GTT
[ENA]
¢þ
>WENV183021234
OLFJ01000393
[OLFJ] human gut metagenome; human gut
1180
1256
+
Asp
GTC
[ENA]
¢þ
>WENV183021240
OLFJ01001018
[OLFJ] human gut metagenome; human gut
1210
1135
-
Trp
CCA
[ENA]
¢þ
>WENV183021215
OLFJ01000021
[OLFJ] human gut metagenome; human gut
1220
1295
+
Thr
TGT
[ENA]
¢þ
>WENV183021216
OLFJ01000021
[OLFJ] human gut metagenome; human gut
1304
1388
+
Tyr
GTA
[ENA]
¢þ
>WENV183021233
OLFJ01000274
[OLFJ] human gut metagenome; human gut
1429
1353
-
fMet
CAT
[ENA]
¢þ
>WENV183021217
OLFJ01000021
[OLFJ] human gut metagenome; human gut
1505
1579
+
Gly
TCC
[ENA]
¢þ
>WENV183021229
OLFJ01000157
[OLFJ] human gut metagenome; human gut
1536
1462
-
Gln
CTG
[ENA]
¢þ
>WENV183021218
OLFJ01000021
[OLFJ] human gut metagenome; human gut
1586
1661
+
Thr
GGT
[ENA]
¢þ
>WENV183021235
OLFJ01000515
[OLFJ] human gut metagenome; human gut
1601
1688
+
Ser
TGA
[ENA]
¢þ
>WENV183021228
OLFJ01000157
[OLFJ] human gut metagenome; human gut
1660
1584
-
Met
CAT
[ENA]
¢þ
>WENV183021227
OLFJ01000150
[OLFJ] human gut metagenome; human gut
2038
1962
-
fMet
CAT
[ENA]
¢þ
>WENV183021225
OLFJ01000074
[OLFJ] human gut metagenome; human gut
2236
2311
+
Ile2
CAT
[ENA]
¢þ
>WENV183021226
OLFJ01000132
[OLFJ] human gut metagenome; human gut
2479
2573
+
SeC
TCA
[ENA]
¢þ
>WENV183021220
OLFJ01000044
[OLFJ] human gut metagenome; human gut
3042
3118
+
Arg
CCG
[ENA]
¢þ
>WENV183021221
OLFJ01000044
[OLFJ] human gut metagenome; human gut
3177
3252
+
His
GTG
[ENA]
¢þ
>WENV183021222
OLFJ01000044
[OLFJ] human gut metagenome; human gut
3273
3359
+
Leu
CAG
[ENA]
¢þ
>WENV183021223
OLFJ01000044
[OLFJ] human gut metagenome; human gut
3402
3478
+
Pro
TGG
[ENA]
¢þ
>WENV183021208
OLFJ01000005
[OLFJ] human gut metagenome; human gut
4473
4398
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK