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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLFK] human gut metagenome; human gut
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183021307
OLFK01004056
[OLFK] human gut metagenome; human gut
1
77
+
Met
CAT
[ENA]
¢þ
>WENV183021296
OLFK01002896
[OLFK] human gut metagenome; human gut
47
120
+
Thr
CGT
[ENA]
¢þ
>WENV183021317
OLFK01005011
[OLFK] human gut metagenome; human gut
54
129
+
Trp
CCA
[ENA]
¢þ
>WENV183021306
OLFK01003950
[OLFK] human gut metagenome; human gut
58
131
+
Ala
TGC
[ENA]
¢þ
>WENV183021321
OLFK01005290
[OLFK] human gut metagenome; human gut
69
144
+
Lys
CTT
[ENA]
¢þ
>WENV183021278
OLFK01000874
[OLFK] human gut metagenome; human gut
70
143
+
Pro
CGG
[ENA]
¢þ
>WENV183021327
OLFK01006120
[OLFK] human gut metagenome; human gut
84
10
-
Gln
TTG
[ENA]
¢þ
>WENV183021257
OLFK01000086
[OLFK] human gut metagenome; human gut
113
207
+
SeC
TCA
[ENA]
¢þ
>WENV183021295
OLFK01002852
[OLFK] human gut metagenome; human gut
130
55
-
His
GTG
[ENA]
¢þ
>WENV183021322
OLFK01005290
[OLFK] human gut metagenome; human gut
153
228
+
Lys
TTT
[ENA]
¢þ
>WENV183021262
OLFK01000252
[OLFK] human gut metagenome; human gut
159
84
-
Val
TAC
[ENA]
¢þ
>WENV183021320
OLFK01005260
[OLFK] human gut metagenome; human gut
187
263
+
Pro
TGG
[ENA]
¢þ
>WENV183021308
OLFK01004056
[OLFK] human gut metagenome; human gut
191
266
+
Ala
TGC
[ENA]
¢þ
>WENV183021328
OLFK01006196
[OLFK] human gut metagenome; human gut
201
276
+
Ala
GGC
[ENA]
¢þ
>WENV183021333
OLFK01006443
[OLFK] human gut metagenome; human gut
204
129
-
Asp
GTC
[ENA]
¢þ
>WENV183021329
OLFK01006282
[OLFK] human gut metagenome; human gut
205
279
+
Gln
CTG
[ENA]
¢þ
>WENV183021318
OLFK01005105
[OLFK] human gut metagenome; human gut
222
297
+
Ile2
CAT
[ENA]
¢þ
>WENV183021323
OLFK01005290
[OLFK] human gut metagenome; human gut
234
310
+
Lys
TTT
[ENA]
¢þ
>WENV183021330
OLFK01006365
[OLFK] human gut metagenome; human gut
240
167
-
Gly
CCC
[ENA]
¢þ
>WENV183021294
OLFK01002852
[OLFK] human gut metagenome; human gut
265
189
-
Arg
CCG
[ENA]
¢þ
>WENV183021309
OLFK01004056
[OLFK] human gut metagenome; human gut
267
343
+
Arg
ACG
[ENA]
¢þ
>WENV183021332
OLFK01006443
[OLFK] human gut metagenome; human gut
292
217
-
Val
TAC
[ENA]
¢þ
>WENV183021293
OLFK01002840
[OLFK] human gut metagenome; human gut
314
387
+
Lys
CTT
[ENA]
¢þ
>WENV183021325
OLFK01005660
[OLFK] human gut metagenome; human gut
325
250
-
fMet
CAT
[ENA]
¢þ
>WENV183021326
OLFK01006080
[OLFK] human gut metagenome; human gut
329
418
+
Ser
GCT
[ENA]
¢þ
>WENV183021273
OLFK01000652
[OLFK] human gut metagenome; human gut
343
272
-
Gln
CTG
[ENA]
¢þ
>WENV183021310
OLFK01004056
[OLFK] human gut metagenome; human gut
351
426
+
Val
TAC
[ENA]
¢þ
>WENV183021298
OLFK01002989
[OLFK] human gut metagenome; human gut
352
427
+
Ile2
CAT
[ENA]
¢þ
>WENV183021314
OLFK01004516
[OLFK] human gut metagenome; human gut
365
440
+
Ile2
CAT
[ENA]
¢þ
>WENV183021331
OLFK01006443
[OLFK] human gut metagenome; human gut
374
300
-
Glu
TTC
[ENA]
¢þ
>WENV183021324
OLFK01005290
[OLFK] human gut metagenome; human gut
400
475
+
Lys
CTT
[ENA]
¢þ
>WENV183021319
OLFK01005105
[OLFK] human gut metagenome; human gut
403
489
+
Leu
TAA
[ENA]
¢þ
>WENV183021311
OLFK01004056
[OLFK] human gut metagenome; human gut
432
507
+
Gly
TCC
[ENA]
¢þ
>WENV183021315
OLFK01004516
[OLFK] human gut metagenome; human gut
448
524
+
Arg
TCG
[ENA]
¢þ
>WENV183021305
OLFK01003728
[OLFK] human gut metagenome; human gut
449
373
-
Pro
TGG
[ENA]
¢þ
>WENV183021299
OLFK01003209
[OLFK] human gut metagenome; human gut
457
373
-
Leu
CAA
[ENA]
¢þ
>WENV183021312
OLFK01004056
[OLFK] human gut metagenome; human gut
517
595
+
Arg
ACG
[ENA]
¢þ
>WENV183021300
OLFK01003419
[OLFK] human gut metagenome; human gut
518
593
+
Pro
TGG
[ENA]
¢þ
>WENV183021304
OLFK01003728
[OLFK] human gut metagenome; human gut
529
455
-
Thr
CGT
[ENA]
¢þ
>WENV183021316
OLFK01004516
[OLFK] human gut metagenome; human gut
538
614
+
Arg
TCT
[ENA]
¢þ
>WENV183021258
OLFK01000114
[OLFK] human gut metagenome; human gut
569
644
+
Glu
TTC
[ENA]
¢þ
>WENV183021297
OLFK01002923
[OLFK] human gut metagenome; human gut
595
511
-
Leu
TAG
[ENA]
¢þ
>WENV183021303
OLFK01003728
[OLFK] human gut metagenome; human gut
700
624
-
Pro
TGG
[ENA]
¢þ
>WENV183021277
OLFK01000847
[OLFK] human gut metagenome; human gut
701
625
-
Met
CAT
[ENA]
¢þ
>WENV183021313
OLFK01004056
[OLFK] human gut metagenome; human gut
714
789
+
Gly
TCC
[ENA]
¢þ
>WENV183021290
OLFK01002163
[OLFK] human gut metagenome; human gut
720
793
+
Phe
GAA
[ENA]
¢þ
>WENV183021302
OLFK01003728
[OLFK] human gut metagenome; human gut
781
706
-
Thr
TGT
[ENA]
¢þ
>WENV183021301
OLFK01003728
[OLFK] human gut metagenome; human gut
858
782
-
Pro
TGG
[ENA]
¢þ
>WENV183021274
OLFK01000679
[OLFK] human gut metagenome; human gut
866
953
+
Ser
GGA
[ENA]
¢þ
>WENV183021275
OLFK01000702
[OLFK] human gut metagenome; human gut
1024
950
-
Ala
GGC
[ENA]
¢þ
>WENV183021286
OLFK01001563
[OLFK] human gut metagenome; human gut
1046
1122
+
Asp
GTC
[ENA]
¢þ
>WENV183021292
OLFK01002259
[OLFK] human gut metagenome; human gut
1051
975
-
Pro
CGG
[ENA]
¢þ
>WENV183021267
OLFK01000318
[OLFK] human gut metagenome; human gut
1074
990
-
Leu
TAA
[ENA]
¢þ
>WENV183021263
OLFK01000264
[OLFK] human gut metagenome; human gut
1099
1173
+
His
GTG
[ENA]
¢þ
>WENV183021266
OLFK01000318
[OLFK] human gut metagenome; human gut
1161
1088
-
Gly
GCC
[ENA]
¢þ
>WENV183021288
OLFK01001720
[OLFK] human gut metagenome; human gut
1178
1095
-
Tyr
GTA
[ENA]
¢þ
>WENV183021287
OLFK01001631
[OLFK] human gut metagenome; human gut
1194
1268
+
Asp
GTC
[ENA]
¢þ
>WENV183021282
OLFK01001022
[OLFK] human gut metagenome; human gut
1236
1162
-
Arg
CCT
[ENA]
¢þ
>WENV183021291
OLFK01002175
[OLFK] human gut metagenome; human gut
1326
1251
-
Phe
GAA
[ENA]
¢þ
>WENV183021289
OLFK01001982
[OLFK] human gut metagenome; human gut
1352
1266
-
Leu
TAA
[ENA]
¢þ
>WENV183021276
OLFK01000737
[OLFK] human gut metagenome; human gut
1407
1335
-
Cys
GCA
[ENA]
¢þ
>WENV183021284
OLFK01001112
[OLFK] human gut metagenome; human gut
1481
1568
+
Ser
GCT
[ENA]
¢þ
>WENV183021271
OLFK01000405
[OLFK] human gut metagenome; human gut
1548
1474
-
Ala
TGC
[ENA]
¢þ
>WENV183021261
OLFK01000220
[OLFK] human gut metagenome; human gut
1568
1494
-
Ile2
CAT
[ENA]
¢þ
>WENV183021280
OLFK01000968
[OLFK] human gut metagenome; human gut
1591
1667
+
Val
GAC
[ENA]
¢þ
>WENV183021285
OLFK01001112
[OLFK] human gut metagenome; human gut
1646
1718
+
Glu
CTC
[ENA]
¢þ
>WENV183021270
OLFK01000405
[OLFK] human gut metagenome; human gut
1653
1577
-
Ile
GAT
[ENA]
¢þ
>WENV183021281
OLFK01000968
[OLFK] human gut metagenome; human gut
1672
1748
+
Val
GAC
[ENA]
¢þ
>WENV183021279
OLFK01000947
[OLFK] human gut metagenome; human gut
1812
1894
+
Leu
TAG
[ENA]
¢þ
>WENV183021283
OLFK01001056
[OLFK] human gut metagenome; human gut
1956
2030
+
Asn
GTT
[ENA]
¢þ
>WENV183021269
OLFK01000366
[OLFK] human gut metagenome; human gut
2631
2704
+
fMet
CAT
[ENA]
¢þ
>WENV183021272
OLFK01000410
[OLFK] human gut metagenome; human gut
2698
2623
-
Asn
GTT
[ENA]
¢þ
>WENV183021264
OLFK01000272
[OLFK] human gut metagenome; human gut
2705
2777
+
Arg
CCT
[ENA]
¢þ
>WENV183021260
OLFK01000153
[OLFK] human gut metagenome; human gut
3287
3375
+
Ser
GGA
[ENA]
¢þ
>WENV183021268
OLFK01000333
[OLFK] human gut metagenome; human gut
3367
3295
-
Glu
TTC
[ENA]
¢þ
>WENV183021259
OLFK01000138
[OLFK] human gut metagenome; human gut
3680
3607
-
Trp
CCA
[ENA]
¢þ
>WENV183021265
OLFK01000295
[OLFK] human gut metagenome; human gut
3725
3798
+
Lys
TTT
[ENA]
¢þ
>WENV183021256
OLFK01000076
[OLFK] human gut metagenome; human gut
4231
4305
+
Thr
TGT
[ENA]
¢þ
>WENV183021253
OLFK01000034
[OLFK] human gut metagenome; human gut
4937
4866
-
Gln
TTG
[ENA]
¢þ
>WENV183021255
OLFK01000067
[OLFK] human gut metagenome; human gut
6399
6315
-
Leu
CAA
[ENA]
¢þ
>WENV183021254
OLFK01000037
[OLFK] human gut metagenome; human gut
7197
7282
+
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK