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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLFQ] human gut metagenome; faeces
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183022447
OLFQ01000566
[OLFQ] human gut metagenome; faeces
15
100
+
Ser
TGA
[ENA]
¢þ
>WENV183022429
OLFQ01000058
[OLFQ] human gut metagenome; faeces
17
92
+
Ala
TGC
[ENA]
¢þ
>WENV183022458
OLFQ01001775
[OLFQ] human gut metagenome; faeces
20
106
+
Ser
GCT
[ENA]
¢þ
>WENV183022480
OLFQ01003855
[OLFQ] human gut metagenome; faeces
53
125
+
Glu
TTC
[ENA]
¢þ
>WENV183022475
OLFQ01003065
[OLFQ] human gut metagenome; faeces
75
159
+
Leu
GAG
[ENA]
¢þ
>WENV183022468
OLFQ01002572
[OLFQ] human gut metagenome; faeces
83
1
-
Leu
TAG
[ENA]
¢þ
>WENV183022452
OLFQ01000968
[OLFQ] human gut metagenome; faeces
84
156
+
Glu
CTC
[ENA]
¢þ
>WENV183022442
OLFQ01000429
[OLFQ] human gut metagenome; faeces
84
158
+
Asn
GTT
[ENA]
¢þ
>WENV183022430
OLFQ01000058
[OLFQ] human gut metagenome; faeces
128
204
+
Ile
GAT
[ENA]
¢þ
>WENV183022449
OLFQ01000667
[OLFQ] human gut metagenome; faeces
130
205
+
Trp
CCA
[ENA]
¢þ
>WENV183022464
OLFQ01002064
[OLFQ] human gut metagenome; faeces
156
244
+
Ser
GGA
[ENA]
¢þ
>WENV183022456
OLFQ01001577
[OLFQ] human gut metagenome; faeces
189
276
+
Leu
TAA
[ENA]
¢þ
>WENV183022476
OLFQ01003105
[OLFQ] human gut metagenome; faeces
201
130
-
Gln
TTG
[ENA]
¢þ
>WENV183022472
OLFQ01002951
[OLFQ] human gut metagenome; faeces
226
311
+
Tyr
GTA
[ENA]
¢þ
>WENV183022465
OLFQ01002322
[OLFQ] human gut metagenome; faeces
250
321
+
Cys
GCA
[ENA]
¢þ
>WENV183022444
OLFQ01000489
[OLFQ] human gut metagenome; faeces
258
344
+
Leu
TAA
[ENA]
¢þ
>WENV183022451
OLFQ01000880
[OLFQ] human gut metagenome; faeces
261
187
-
Ala
TGC
[ENA]
¢þ
>WENV183022470
OLFQ01002605
[OLFQ] human gut metagenome; faeces
283
207
-
Ile
GAT
[ENA]
¢þ
>WENV183022479
OLFQ01003842
[OLFQ] human gut metagenome; faeces
288
376
+
Ser
GCT
[ENA]
¢þ
>WENV183022481
OLFQ01004291
[OLFQ] human gut metagenome; faeces
355
281
-
Gln
TTG
[ENA]
¢þ
>WENV183022440
OLFQ01000376
[OLFQ] human gut metagenome; faeces
357
440
+
Tyr
GTA
[ENA]
¢þ
>WENV183022469
OLFQ01002605
[OLFQ] human gut metagenome; faeces
372
297
-
Ala
TGC
[ENA]
¢þ
>WENV183022463
OLFQ01002049
[OLFQ] human gut metagenome; faeces
385
313
-
Glu
TTC
[ENA]
¢þ
>WENV183022466
OLFQ01002453
[OLFQ] human gut metagenome; faeces
396
314
-
Leu
TAG
[ENA]
¢þ
>WENV183022448
OLFQ01000641
[OLFQ] human gut metagenome; faeces
400
474
+
Thr
TGT
[ENA]
¢þ
>WENV183022477
OLFQ01003323
[OLFQ] human gut metagenome; faeces
403
331
-
Glu
TTC
[ENA]
¢þ
>WENV183022482
OLFQ01005079
[OLFQ] human gut metagenome; faeces
421
493
+
Arg
CCT
[ENA]
¢þ
>WENV183022455
OLFQ01001449
[OLFQ] human gut metagenome; faeces
422
347
-
Lys
TTT
[ENA]
¢þ
>WENV183022450
OLFQ01000880
[OLFQ] human gut metagenome; faeces
425
351
-
Ile
GAT
[ENA]
¢þ
>WENV183022478
OLFQ01003445
[OLFQ] human gut metagenome; faeces
426
502
+
Pro
GGG
[ENA]
¢þ
>WENV183022459
OLFQ01001802
[OLFQ] human gut metagenome; faeces
428
356
-
Arg
CCG
[ENA]
¢þ
>WENV183022473
OLFQ01002951
[OLFQ] human gut metagenome; faeces
434
505
+
Glu
TTC
[ENA]
¢þ
>WENV183022454
OLFQ01001244
[OLFQ] human gut metagenome; faeces
446
358
-
Ser
GGA
[ENA]
¢þ
>WENV183022441
OLFQ01000376
[OLFQ] human gut metagenome; faeces
457
529
+
Thr
GGT
[ENA]
¢þ
>WENV183022462
OLFQ01002049
[OLFQ] human gut metagenome; faeces
461
390
-
Gln
TTG
[ENA]
¢þ
>WENV183022460
OLFQ01001910
[OLFQ] human gut metagenome; faeces
474
401
-
Trp
CCA
[ENA]
¢þ
>WENV183022474
OLFQ01002951
[OLFQ] human gut metagenome; faeces
506
580
+
Arg
TCT
[ENA]
¢þ
>WENV183022471
OLFQ01002871
[OLFQ] human gut metagenome; faeces
511
435
-
Arg
CCT
[ENA]
¢þ
>WENV183022439
OLFQ01000348
[OLFQ] human gut metagenome; faeces
527
452
-
Pro
CGG
[ENA]
¢þ
>WENV183022461
OLFQ01002009
[OLFQ] human gut metagenome; faeces
576
650
+
Pro
GGG
[ENA]
¢þ
>WENV183022467
OLFQ01002494
[OLFQ] human gut metagenome; faeces
581
496
-
Ser
TGA
[ENA]
¢þ
>WENV183022446
OLFQ01000556
[OLFQ] human gut metagenome; faeces
585
511
-
His
GTG
[ENA]
¢þ
>WENV183022445
OLFQ01000526
[OLFQ] human gut metagenome; faeces
594
521
-
Thr
CGT
[ENA]
¢þ
>WENV183022453
OLFQ01001157
[OLFQ] human gut metagenome; faeces
625
549
-
Ala
GGC
[ENA]
¢þ
>WENV183022457
OLFQ01001653
[OLFQ] human gut metagenome; faeces
658
732
+
Arg
TCT
[ENA]
¢þ
>WENV183022438
OLFQ01000348
[OLFQ] human gut metagenome; faeces
680
605
-
Pro
TGG
[ENA]
¢þ
>WENV183022443
OLFQ01000457
[OLFQ] human gut metagenome; faeces
693
619
-
Asp
GTC
[ENA]
¢þ
>WENV183022437
OLFQ01000205
[OLFQ] human gut metagenome; faeces
749
822
+
fMet
CAT
[ENA]
¢þ
>WENV183022434
OLFQ01000080
[OLFQ] human gut metagenome; faeces
1115
1188
+
Phe
GAA
[ENA]
¢þ
>WENV183022435
OLFQ01000080
[OLFQ] human gut metagenome; faeces
1203
1276
+
Pro
CGG
[ENA]
¢þ
>WENV183022436
OLFQ01000143
[OLFQ] human gut metagenome; faeces
1587
1514
-
Ala
TGC
[ENA]
¢þ
>WENV183022433
OLFQ01000064
[OLFQ] human gut metagenome; faeces
2070
1985
-
Leu
TAA
[ENA]
¢þ
>WENV183022432
OLFQ01000064
[OLFQ] human gut metagenome; faeces
2159
2086
-
Gly
GCC
[ENA]
¢þ
>WENV183022431
OLFQ01000064
[OLFQ] human gut metagenome; faeces
2255
2172
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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