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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLHB] seawater metagenome; Sea water
HIT:
58 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183055427
OLHB01005552
[OLHB] seawater metagenome; Sea water
38
114
+
Arg
TCT
[ENA]
¢þ
>WENV183055415
OLHB01004810
[OLHB] seawater metagenome; Sea water
48
124
+
Pro
TGG
[ENA]
¢þ
>WENV183055425
OLHB01005513
[OLHB] seawater metagenome; Sea water
60
133
+
Cys
GCA
[ENA]
¢þ
>WENV183055419
OLHB01005028
[OLHB] seawater metagenome; Sea water
68
144
+
fMet
CAT
[ENA]
¢þ
>WENV183055410
OLHB01004609
[OLHB] seawater metagenome; Sea water
94
170
+
fMet
CAT
[ENA]
¢þ
>WENV183055428
OLHB01005552
[OLHB] seawater metagenome; Sea water
122
197
+
His
GTG
[ENA]
¢þ
>WENV183055381
OLHB01000926
[OLHB] seawater metagenome; Sea water
143
219
+
Trp
CCA
[ENA]
¢þ
>WENV183055421
OLHB01005401
[OLHB] seawater metagenome; Sea water
162
252
+
Ser
GCT
[ENA]
¢þ
>WENV183055416
OLHB01004810
[OLHB] seawater metagenome; Sea water
175
251
+
Arg
TCT
[ENA]
¢þ
>WENV183055430
OLHB01005595
[OLHB] seawater metagenome; Sea water
177
253
+
Ile
GAT
[ENA]
¢þ
>WENV183055401
OLHB01004099
[OLHB] seawater metagenome; Sea water
186
261
+
Thr
TGT
[ENA]
¢þ
>WENV183055420
OLHB01005330
[OLHB] seawater metagenome; Sea water
193
118
-
Gln
TTG
[ENA]
¢þ
>WENV183055409
OLHB01004503
[OLHB] seawater metagenome; Sea water
194
110
-
Leu
TAG
[ENA]
¢þ
>WENV183055426
OLHB01005513
[OLHB] seawater metagenome; Sea water
196
282
+
Leu
TAA
[ENA]
¢þ
>WENV183055375
OLHB01000207
[OLHB] seawater metagenome; Sea water
202
127
-
Lys
TTT
[ENA]
¢þ
>WENV183055396
OLHB01002929
[OLHB] seawater metagenome; Sea water
216
140
-
Val
GAC
[ENA]
¢þ
>WENV183055429
OLHB01005552
[OLHB] seawater metagenome; Sea water
237
313
+
Pro
TGG
[ENA]
¢þ
>WENV183055431
OLHB01005595
[OLHB] seawater metagenome; Sea water
274
349
+
Ala
TGC
[ENA]
¢þ
>WENV183055408
OLHB01004503
[OLHB] seawater metagenome; Sea water
277
202
-
His
GTG
[ENA]
¢þ
>WENV183055424
OLHB01005493
[OLHB] seawater metagenome; Sea water
283
207
-
Arg
CCG
[ENA]
¢þ
>WENV183055402
OLHB01004099
[OLHB] seawater metagenome; Sea water
302
385
+
Tyr
GTA
[ENA]
¢þ
>WENV183055391
OLHB01001348
[OLHB] seawater metagenome; Sea water
309
234
-
Thr
GGT
[ENA]
¢þ
>WENV183055405
OLHB01004454
[OLHB] seawater metagenome; Sea water
319
245
-
Gln
TTG
[ENA]
¢þ
>WENV183055412
OLHB01004612
[OLHB] seawater metagenome; Sea water
324
398
+
Gln
TTG
[ENA]
¢þ
>WENV183055417
OLHB01004810
[OLHB] seawater metagenome; Sea water
346
421
+
His
GTG
[ENA]
¢þ
>WENV183055411
OLHB01004609
[OLHB] seawater metagenome; Sea water
357
433
+
fMet
CAT
[ENA]
¢þ
>WENV183055422
OLHB01005401
[OLHB] seawater metagenome; Sea water
358
434
+
Arg
ACG
[ENA]
¢þ
>WENV183055390
OLHB01001348
[OLHB] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¢þ
>WENV183055423
OLHB01005406
[OLHB] seawater metagenome; Sea water
393
478
+
Leu
CAA
[ENA]
¢þ
>WENV183055403
OLHB01004099
[OLHB] seawater metagenome; Sea water
396
470
+
Gly
TCC
[ENA]
¢þ
>WENV183055413
OLHB01004612
[OLHB] seawater metagenome; Sea water
435
509
+
Gln
TTG
[ENA]
¢þ
>WENV183055407
OLHB01004503
[OLHB] seawater metagenome; Sea water
451
375
-
Arg
TCT
[ENA]
¢þ
>WENV183055398
OLHB01003544
[OLHB] seawater metagenome; Sea water
460
385
-
Ala
TGC
[ENA]
¢þ
>WENV183055418
OLHB01004810
[OLHB] seawater metagenome; Sea water
477
559
+
Leu
TAG
[ENA]
¢þ
>WENV183055404
OLHB01004099
[OLHB] seawater metagenome; Sea water
489
564
+
Thr
GGT
[ENA]
¢þ
>WENV183055389
OLHB01001348
[OLHB] seawater metagenome; Sea water
509
425
-
Tyr
GTA
[ENA]
¢þ
>WENV183055414
OLHB01004612
[OLHB] seawater metagenome; Sea water
546
620
+
Gln
TTG
[ENA]
¢þ
>WENV183055406
OLHB01004503
[OLHB] seawater metagenome; Sea water
553
477
-
Pro
TGG
[ENA]
¢þ
>WENV183055400
OLHB01003818
[OLHB] seawater metagenome; Sea water
581
656
+
Phe
GAA
[ENA]
¢þ
>WENV183055388
OLHB01001348
[OLHB] seawater metagenome; Sea water
592
517
-
Thr
TGT
[ENA]
¢þ
>WENV183055397
OLHB01003544
[OLHB] seawater metagenome; Sea water
633
557
-
Ile
GAT
[ENA]
¢þ
>WENV183055399
OLHB01003665
[OLHB] seawater metagenome; Sea water
640
564
-
Ile
GAT
[ENA]
¢þ
>WENV183055395
OLHB01002927
[OLHB] seawater metagenome; Sea water
692
776
+
Leu
GAG
[ENA]
¢þ
>WENV183055384
OLHB01001348
[OLHB] seawater metagenome; Sea water
793
868
+
Thr
TGT
[ENA]
¢þ
>WENV183055385
OLHB01001348
[OLHB] seawater metagenome; Sea water
876
960
+
Tyr
GTA
[ENA]
¢þ
>WENV183055386
OLHB01001348
[OLHB] seawater metagenome; Sea water
994
1068
+
Gly
TCC
[ENA]
¢þ
>WENV183055387
OLHB01001348
[OLHB] seawater metagenome; Sea water
1076
1151
+
Thr
GGT
[ENA]
¢þ
>WENV183055393
OLHB01001683
[OLHB] seawater metagenome; Sea water
1113
1037
-
Trp
CCA
[ENA]
¢þ
>WENV183055394
OLHB01001839
[OLHB] seawater metagenome; Sea water
1144
1069
-
Gln
TTG
[ENA]
¢þ
>WENV183055392
OLHB01001541
[OLHB] seawater metagenome; Sea water
1277
1201
-
Trp
CCA
[ENA]
¢þ
>WENV183055383
OLHB01001235
[OLHB] seawater metagenome; Sea water
1327
1416
+
Ser
GGA
[ENA]
¢þ
>WENV183055382
OLHB01001209
[OLHB] seawater metagenome; Sea water
1471
1396
-
Thr
GGT
[ENA]
¢þ
>WENV183055377
OLHB01000621
[OLHB] seawater metagenome; Sea water
1526
1601
+
Thr
TGT
[ENA]
¢þ
>WENV183055378
OLHB01000621
[OLHB] seawater metagenome; Sea water
1609
1693
+
Tyr
GTA
[ENA]
¢þ
>WENV183055379
OLHB01000621
[OLHB] seawater metagenome; Sea water
1732
1806
+
Gly
TCC
[ENA]
¢þ
>WENV183055380
OLHB01000621
[OLHB] seawater metagenome; Sea water
1813
1888
+
Thr
GGT
[ENA]
¢þ
>WENV183055376
OLHB01000274
[OLHB] seawater metagenome; Sea water
2858
2942
+
Leu
GAG
[ENA]
¢þ
>WENV183055374
OLHB01000021
[OLHB] seawater metagenome; Sea water
7098
7023
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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