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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLHO] seawater metagenome; Sea water
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183058249
OLHO01000588
[OLHO] seawater metagenome; Sea water
56
132
+
Ile
GAT
[ENA]
¢þ
>WENV183058250
OLHO01000588
[OLHO] seawater metagenome; Sea water
163
238
+
Ala
TGC
[ENA]
¢þ
>WENV183058255
OLHO01001939
[OLHO] seawater metagenome; Sea water
173
85
-
Leu
TAA
[ENA]
¢þ
>WENV183058233
OLHO01000005
[OLHO] seawater metagenome; Sea water
175
258
+
Tyr
GTA
[ENA]
¢þ
>WENV183058244
OLHO01000488
[OLHO] seawater metagenome; Sea water
227
310
+
Tyr
GTA
[ENA]
¢þ
>WENV183058234
OLHO01000005
[OLHO] seawater metagenome; Sea water
335
408
+
Gly
TCC
[ENA]
¢þ
>WENV183058257
OLHO01002489
[OLHO] seawater metagenome; Sea water
335
409
+
Gln
TTG
[ENA]
¢þ
>WENV183058235
OLHO01000005
[OLHO] seawater metagenome; Sea water
453
528
+
Thr
GGT
[ENA]
¢þ
>WENV183058254
OLHO01001651
[OLHO] seawater metagenome; Sea water
483
407
-
Ile
GAT
[ENA]
¢þ
>WENV183058245
OLHO01000488
[OLHO] seawater metagenome; Sea water
494
567
+
Gly
TCC
[ENA]
¢þ
>WENV183058256
OLHO01002106
[OLHO] seawater metagenome; Sea water
502
418
-
Leu
TAG
[ENA]
¢þ
>WENV183058253
OLHO01001651
[OLHO] seawater metagenome; Sea water
597
522
-
Ala
TGC
[ENA]
¢þ
>WENV183058251
OLHO01000770
[OLHO] seawater metagenome; Sea water
598
683
+
Leu
GAG
[ENA]
¢þ
>WENV183058246
OLHO01000488
[OLHO] seawater metagenome; Sea water
613
688
+
Thr
GGT
[ENA]
¢þ
>WENV183058247
OLHO01000545
[OLHO] seawater metagenome; Sea water
619
543
-
Asp
GTC
[ENA]
¢þ
>WENV183058252
OLHO01001476
[OLHO] seawater metagenome; Sea water
662
589
-
Ala
TGC
[ENA]
¢þ
>WENV183058248
OLHO01000571
[OLHO] seawater metagenome; Sea water
805
730
-
Gln
TTG
[ENA]
¢þ
>WENV183058243
OLHO01000443
[OLHO] seawater metagenome; Sea water
952
877
-
Gln
TTG
[ENA]
¢þ
>WENV183058238
OLHO01000096
[OLHO] seawater metagenome; Sea water
1216
1291
+
Trp
CCA
[ENA]
¢þ
>WENV183058242
OLHO01000258
[OLHO] seawater metagenome; Sea water
1394
1319
-
His
GTG
[ENA]
¢þ
>WENV183058241
OLHO01000258
[OLHO] seawater metagenome; Sea water
1501
1425
-
Arg
TCT
[ENA]
¢þ
>WENV183058240
OLHO01000258
[OLHO] seawater metagenome; Sea water
1602
1526
-
Pro
TGG
[ENA]
¢þ
>WENV183058239
OLHO01000191
[OLHO] seawater metagenome; Sea water
1788
1877
+
Ser
GCT
[ENA]
¢þ
>WENV183058236
OLHO01000005
[OLHO] seawater metagenome; Sea water
1942
2017
+
Trp
CCA
[ENA]
¢þ
>WENV183058237
OLHO01000017
[OLHO] seawater metagenome; Sea water
4048
3972
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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