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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLHT] seawater metagenome; Sea water
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183059186
OLHT01005094
[OLHT] seawater metagenome; Sea water
5
81
+
Trp
CCA
[ENA]
¢þ
>WENV183059177
OLHT01002402
[OLHT] seawater metagenome; Sea water
36
112
+
Arg
CCG
[ENA]
¢þ
>WENV183059174
OLHT01001469
[OLHT] seawater metagenome; Sea water
41
116
+
Arg
CCT
[ENA]
¢þ
>WENV183059163
OLHT01000361
[OLHT] seawater metagenome; Sea water
87
163
+
Arg
TCT
[ENA]
¢þ
>WENV183059175
OLHT01001687
[OLHT] seawater metagenome; Sea water
89
164
+
Thr
GGT
[ENA]
¢þ
>WENV183059185
OLHT01004682
[OLHT] seawater metagenome; Sea water
107
21
-
Leu
GAG
[ENA]
¢þ
>WENV183059179
OLHT01002446
[OLHT] seawater metagenome; Sea water
122
198
+
fMet
CAT
[ENA]
¢þ
>WENV183059173
OLHT01001313
[OLHT] seawater metagenome; Sea water
124
200
+
Ile2
CAT
[ENA]
¢þ
>WENV183059181
OLHT01002744
[OLHT] seawater metagenome; Sea water
166
241
+
Gly
TCC
[ENA]
¢þ
>WENV183059164
OLHT01000361
[OLHT] seawater metagenome; Sea water
204
279
+
His
GTG
[ENA]
¢þ
>WENV183059169
OLHT01000822
[OLHT] seawater metagenome; Sea water
230
305
+
Trp
CCA
[ENA]
¢þ
>WENV183059151
OLHT01000184
[OLHT] seawater metagenome; Sea water
236
160
-
Val
GAC
[ENA]
¢þ
>WENV183059180
OLHT01002446
[OLHT] seawater metagenome; Sea water
255
331
+
fMet
CAT
[ENA]
¢þ
>WENV183059150
OLHT01000092
[OLHT] seawater metagenome; Sea water
272
197
-
Lys
TTT
[ENA]
¢þ
>WENV183059176
OLHT01002176
[OLHT] seawater metagenome; Sea water
273
186
-
Ser
GGA
[ENA]
¢þ
>WENV183059182
OLHT01003742
[OLHT] seawater metagenome; Sea water
311
387
+
Ile
GAT
[ENA]
¢þ
>WENV183059184
OLHT01004492
[OLHT] seawater metagenome; Sea water
412
487
+
Trp
CCA
[ENA]
¢þ
>WENV183059183
OLHT01003742
[OLHT] seawater metagenome; Sea water
426
501
+
Ala
TGC
[ENA]
¢þ
>WENV183059162
OLHT01000333
[OLHT] seawater metagenome; Sea water
621
535
-
Leu
TAA
[ENA]
¢þ
>WENV183059161
OLHT01000333
[OLHT] seawater metagenome; Sea water
739
666
-
Cys
GCA
[ENA]
¢þ
>WENV183059160
OLHT01000333
[OLHT] seawater metagenome; Sea water
859
784
-
Gly
GCC
[ENA]
¢þ
>WENV183059178
OLHT01002423
[OLHT] seawater metagenome; Sea water
1066
990
-
Asp
GTC
[ENA]
¢þ
>WENV183059172
OLHT01000869
[OLHT] seawater metagenome; Sea water
1389
1314
-
Thr
GGT
[ENA]
¢þ
>WENV183059168
OLHT01000727
[OLHT] seawater metagenome; Sea water
1453
1366
-
Ser
GGA
[ENA]
¢þ
>WENV183059171
OLHT01000869
[OLHT] seawater metagenome; Sea water
1480
1407
-
Gly
TCC
[ENA]
¢þ
>WENV183059170
OLHT01000869
[OLHT] seawater metagenome; Sea water
1633
1550
-
Tyr
GTA
[ENA]
¢þ
>WENV183059166
OLHT01000722
[OLHT] seawater metagenome; Sea water
1745
1820
+
Ala
GGC
[ENA]
¢þ
>WENV183059167
OLHT01000722
[OLHT] seawater metagenome; Sea water
1844
1919
+
Glu
TTC
[ENA]
¢þ
>WENV183059165
OLHT01000612
[OLHT] seawater metagenome; Sea water
2843
2918
+
Phe
GAA
[ENA]
¢þ
>WENV183059159
OLHT01000324
[OLHT] seawater metagenome; Sea water
2921
2995
+
Gln
TTG
[ENA]
¢þ
>WENV183059158
OLHT01000274
[OLHT] seawater metagenome; Sea water
3044
2969
-
Asn
GTT
[ENA]
¢þ
>WENV183059156
OLHT01000246
[OLHT] seawater metagenome; Sea water
4499
4574
+
Val
TAC
[ENA]
¢þ
>WENV183059157
OLHT01000256
[OLHT] seawater metagenome; Sea water
4538
4614
+
Pro
GGG
[ENA]
¢þ
>WENV183059152
OLHT01000212
[OLHT] seawater metagenome; Sea water
4603
4692
+
Ser
GCT
[ENA]
¢þ
>WENV183059154
OLHT01000231
[OLHT] seawater metagenome; Sea water
4650
4739
+
Ser
GCT
[ENA]
¢þ
>WENV183059155
OLHT01000231
[OLHT] seawater metagenome; Sea water
4784
4860
+
Arg
GCG
[ENA]
¢þ
>WENV183059153
OLHT01000212
[OLHT] seawater metagenome; Sea water
4800
4876
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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