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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLIZ] human gut metagenome; human gut
HIT:
124 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183081057
OLIZ01000051
[OLIZ] human gut metagenome; human gut
57
131
+
fMet
CAT
[ENA]
¢þ
>WENV183081120
OLIZ01000818
[OLIZ] human gut metagenome; human gut
94
169
+
Ala
TGC
[ENA]
¢þ
>WENV183081096
OLIZ01000468
[OLIZ] human gut metagenome; human gut
143
68
-
Arg
CCT
[ENA]
¢þ
>WENV183081138
OLIZ01001902
[OLIZ] human gut metagenome; human gut
159
74
-
Leu
TAA
[ENA]
¢þ
>WENV183081119
OLIZ01000752
[OLIZ] human gut metagenome; human gut
195
121
-
Asn
GTT
[ENA]
¢þ
>WENV183081137
OLIZ01001902
[OLIZ] human gut metagenome; human gut
238
167
-
Gly
GCC
[ENA]
¢þ
>WENV183081118
OLIZ01000752
[OLIZ] human gut metagenome; human gut
276
203
-
Glu
TTC
[ENA]
¢þ
>WENV183081136
OLIZ01001902
[OLIZ] human gut metagenome; human gut
334
262
-
Thr
TGT
[ENA]
¢þ
>WENV183081068
OLIZ01000083
[OLIZ] human gut metagenome; human gut
353
280
-
Arg
TCT
[ENA]
¢þ
>WENV183081121
OLIZ01000961
[OLIZ] human gut metagenome; human gut
422
498
+
His
GTG
[ENA]
¢þ
>WENV183081135
OLIZ01001902
[OLIZ] human gut metagenome; human gut
434
351
-
Leu
TAG
[ENA]
¢þ
>WENV183081117
OLIZ01000729
[OLIZ] human gut metagenome; human gut
459
549
+
Ser
GGA
[ENA]
¢þ
>WENV183081122
OLIZ01000961
[OLIZ] human gut metagenome; human gut
502
585
+
Leu
TAG
[ENA]
¢þ
>WENV183081134
OLIZ01001902
[OLIZ] human gut metagenome; human gut
512
440
-
Lys
TTT
[ENA]
¢þ
>WENV183081115
OLIZ01000532
[OLIZ] human gut metagenome; human gut
586
511
-
Arg
CCG
[ENA]
¢þ
>WENV183081133
OLIZ01001902
[OLIZ] human gut metagenome; human gut
609
537
-
Asp
GTC
[ENA]
¢þ
>WENV183081093
OLIZ01000260
[OLIZ] human gut metagenome; human gut
670
766
+
SeC
TCA
[ENA]
¢þ
>WENV183081132
OLIZ01001902
[OLIZ] human gut metagenome; human gut
685
611
-
Val
TAC
[ENA]
¢þ
>WENV183081131
OLIZ01001315
[OLIZ] human gut metagenome; human gut
698
613
-
Leu
CAA
[ENA]
¢þ
>WENV183081029
OLIZ01000012
[OLIZ] human gut metagenome; human gut
709
635
-
Ala
TGC
[ENA]
¢þ
>WENV183081087
OLIZ01000159
[OLIZ] human gut metagenome; human gut
728
802
+
Val
TAC
[ENA]
¢þ
>WENV183081130
OLIZ01001315
[OLIZ] human gut metagenome; human gut
779
708
-
Gln
TTG
[ENA]
¢þ
>WENV183081050
OLIZ01000042
[OLIZ] human gut metagenome; human gut
833
918
+
Leu
GAG
[ENA]
¢þ
>WENV183081129
OLIZ01001315
[OLIZ] human gut metagenome; human gut
869
789
-
Tyr
GTA
[ENA]
¢þ
>WENV183081114
OLIZ01000532
[OLIZ] human gut metagenome; human gut
874
800
-
Trp
CCA
[ENA]
¢þ
>WENV183081123
OLIZ01000961
[OLIZ] human gut metagenome; human gut
942
856
-
Leu
CAA
[ENA]
¢þ
>WENV183081113
OLIZ01000532
[OLIZ] human gut metagenome; human gut
950
875
-
Phe
GAA
[ENA]
¢þ
>WENV183081128
OLIZ01001315
[OLIZ] human gut metagenome; human gut
958
883
-
Phe
GAA
[ENA]
¢þ
>WENV183081127
OLIZ01001315
[OLIZ] human gut metagenome; human gut
1034
961
-
fMet
CAT
[ENA]
¢þ
>WENV183081112
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1096
1020
-
Ile2
CAT
[ENA]
¢þ
>WENV183081126
OLIZ01001315
[OLIZ] human gut metagenome; human gut
1133
1044
-
Ser
TGA
[ENA]
¢þ
>WENV183081111
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1207
1117
-
Ser
GCT
[ENA]
¢þ
>WENV183081125
OLIZ01001315
[OLIZ] human gut metagenome; human gut
1218
1143
-
Ile2
CAT
[ENA]
¢þ
>WENV183081124
OLIZ01001315
[OLIZ] human gut metagenome; human gut
1308
1233
-
Met
CAT
[ENA]
¢þ
>WENV183081110
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1315
1227
-
Ser
TGA
[ENA]
¢þ
>WENV183081109
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1396
1321
-
Lys
TTT
[ENA]
¢þ
>WENV183081035
OLIZ01000016
[OLIZ] human gut metagenome; human gut
1435
1360
-
Trp
CCA
[ENA]
¢þ
>WENV183081108
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1477
1401
-
Gln
TTG
[ENA]
¢þ
>WENV183081085
OLIZ01000137
[OLIZ] human gut metagenome; human gut
1552
1460
-
Ser
TGA
[ENA]
¢þ
>WENV183081107
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1561
1485
-
Arg
TCT
[ENA]
¢þ
>WENV183081106
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1640
1567
-
Gly
TCC
[ENA]
¢þ
>WENV183081105
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1762
1678
-
Tyr
GTA
[ENA]
¢þ
>WENV183081104
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1864
1789
-
Thr
TGT
[ENA]
¢þ
>WENV183081103
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1946
1870
-
Asp
GTC
[ENA]
¢þ
>WENV183081102
OLIZ01000532
[OLIZ] human gut metagenome; human gut
2064
1989
-
Val
TAC
[ENA]
¢þ
>WENV183081101
OLIZ01000532
[OLIZ] human gut metagenome; human gut
2146
2072
-
Glu
TTC
[ENA]
¢þ
>WENV183081116
OLIZ01000589
[OLIZ] human gut metagenome; human gut
2311
2385
+
Arg
TCT
[ENA]
¢þ
>WENV183081100
OLIZ01000532
[OLIZ] human gut metagenome; human gut
2536
2460
-
Met
CAT
[ENA]
¢þ
>WENV183081099
OLIZ01000532
[OLIZ] human gut metagenome; human gut
2637
2561
-
fMet
CAT
[ENA]
¢þ
>WENV183081098
OLIZ01000532
[OLIZ] human gut metagenome; human gut
2730
2642
-
Leu
TAA
[ENA]
¢þ
>WENV183081097
OLIZ01000532
[OLIZ] human gut metagenome; human gut
2808
2734
-
Asn
GTT
[ENA]
¢þ
>WENV183081095
OLIZ01000327
[OLIZ] human gut metagenome; human gut
4457
4382
-
Lys
TTT
[ENA]
¢þ
>WENV183081094
OLIZ01000322
[OLIZ] human gut metagenome; human gut
4642
4571
-
Arg
CCG
[ENA]
¢þ
>WENV183081074
OLIZ01000124
[OLIZ] human gut metagenome; human gut
4857
4930
+
fMet
CAT
[ENA]
¢þ
>WENV183081075
OLIZ01000124
[OLIZ] human gut metagenome; human gut
4945
5020
+
Asp
GTC
[ENA]
¢þ
>WENV183081076
OLIZ01000124
[OLIZ] human gut metagenome; human gut
5030
5104
+
Phe
GAA
[ENA]
¢þ
>WENV183081077
OLIZ01000124
[OLIZ] human gut metagenome; human gut
5117
5192
+
His
GTG
[ENA]
¢þ
>WENV183081078
OLIZ01000124
[OLIZ] human gut metagenome; human gut
5210
5283
+
Gly
TCC
[ENA]
¢þ
>WENV183081066
OLIZ01000081
[OLIZ] human gut metagenome; human gut
5213
5142
-
Cys
GCA
[ENA]
¢þ
>WENV183081079
OLIZ01000124
[OLIZ] human gut metagenome; human gut
5293
5367
+
Asn
GTT
[ENA]
¢þ
>WENV183081065
OLIZ01000081
[OLIZ] human gut metagenome; human gut
5314
5241
-
Gly
GCC
[ENA]
¢þ
>WENV183081080
OLIZ01000124
[OLIZ] human gut metagenome; human gut
5368
5441
+
Glu
TTC
[ENA]
¢þ
>WENV183081081
OLIZ01000124
[OLIZ] human gut metagenome; human gut
5447
5522
+
Val
TAC
[ENA]
¢þ
>WENV183081082
OLIZ01000124
[OLIZ] human gut metagenome; human gut
5529
5604
+
Thr
TGT
[ENA]
¢þ
>WENV183081083
OLIZ01000124
[OLIZ] human gut metagenome; human gut
5611
5684
+
Lys
TTT
[ENA]
¢þ
>WENV183081064
OLIZ01000081
[OLIZ] human gut metagenome; human gut
5730
5659
-
Cys
GCA
[ENA]
¢þ
>WENV183081063
OLIZ01000081
[OLIZ] human gut metagenome; human gut
5831
5758
-
Gly
GCC
[ENA]
¢þ
>WENV183081062
OLIZ01000081
[OLIZ] human gut metagenome; human gut
6047
6119
+
Val
CAC
[ENA]
¢þ
>WENV183081091
OLIZ01000210
[OLIZ] human gut metagenome; human gut
6348
6421
+
Glu
TTC
[ENA]
¢þ
>WENV183081052
OLIZ01000043
[OLIZ] human gut metagenome; human gut
6356
6281
-
Glu
CTC
[ENA]
¢þ
>WENV183081051
OLIZ01000043
[OLIZ] human gut metagenome; human gut
6456
6384
-
Gln
CTG
[ENA]
¢þ
>WENV183081092
OLIZ01000210
[OLIZ] human gut metagenome; human gut
6469
6543
+
Asp
GTC
[ENA]
¢þ
>WENV183081084
OLIZ01000129
[OLIZ] human gut metagenome; human gut
6672
6761
+
Ser
CGA
[ENA]
¢þ
>WENV183081086
OLIZ01000158
[OLIZ] human gut metagenome; human gut
6750
6825
+
Lys
TTT
[ENA]
¢þ
>WENV183081040
OLIZ01000024
[OLIZ] human gut metagenome; human gut
7312
7239
-
Arg
CCT
[ENA]
¢þ
>WENV183081041
OLIZ01000028
[OLIZ] human gut metagenome; human gut
7697
7771
+
Thr
GGT
[ENA]
¢þ
>WENV183081071
OLIZ01000091
[OLIZ] human gut metagenome; human gut
7802
7731
-
Gln
TTG
[ENA]
¢þ
>WENV183081090
OLIZ01000179
[OLIZ] human gut metagenome; human gut
8135
8046
-
Ser
GCT
[ENA]
¢þ
>WENV183081089
OLIZ01000179
[OLIZ] human gut metagenome; human gut
8213
8138
-
Ile
GAT
[ENA]
¢þ
>WENV183081088
OLIZ01000179
[OLIZ] human gut metagenome; human gut
8318
8246
-
Gly
TCC
[ENA]
¢þ
>WENV183081067
OLIZ01000082
[OLIZ] human gut metagenome; human gut
8441
8354
-
Ser
GGA
[ENA]
¢þ
>WENV183081034
OLIZ01000016
[OLIZ] human gut metagenome; human gut
8569
8495
-
Met
CAT
[ENA]
¢þ
>WENV183081033
OLIZ01000016
[OLIZ] human gut metagenome; human gut
8663
8590
-
Thr
GGT
[ENA]
¢þ
>WENV183081032
OLIZ01000016
[OLIZ] human gut metagenome; human gut
8837
8754
-
Tyr
GTA
[ENA]
¢þ
>WENV183081060
OLIZ01000059
[OLIZ] human gut metagenome; human gut
9704
9780
+
Leu
TAA
[ENA]
¢þ
>WENV183081069
OLIZ01000090
[OLIZ] human gut metagenome; human gut
9733
9806
+
Lys
CTT
[ENA]
¢þ
>WENV183081072
OLIZ01000096
[OLIZ] human gut metagenome; human gut
9899
9825
-
Pro
CGG
[ENA]
¢þ
>WENV183081059
OLIZ01000058
[OLIZ] human gut metagenome; human gut
9968
9894
-
Pro
GGG
[ENA]
¢þ
>WENV183081045
OLIZ01000035
[OLIZ] human gut metagenome; human gut
10549
10636
+
Ser
TGA
[ENA]
¢þ
>WENV183081073
OLIZ01000119
[OLIZ] human gut metagenome; human gut
10580
10656
+
Pro
TGG
[ENA]
¢þ
>WENV183081044
OLIZ01000034
[OLIZ] human gut metagenome; human gut
11148
11075
-
Gly
CCC
[ENA]
¢þ
>WENV183081070
OLIZ01000090
[OLIZ] human gut metagenome; human gut
11615
11531
-
Leu
TAG
[ENA]
¢þ
>WENV183081061
OLIZ01000073
[OLIZ] human gut metagenome; human gut
11680
11605
-
Ala
CGC
[ENA]
¢þ
>WENV183081058
OLIZ01000054
[OLIZ] human gut metagenome; human gut
13002
12927
-
His
GTG
[ENA]
¢þ
>WENV183081015
OLIZ01000001
[OLIZ] human gut metagenome; human gut
14286
14374
+
Leu
GAG
[ENA]
¢þ
>WENV183081025
OLIZ01000006
[OLIZ] human gut metagenome; human gut
17974
17899
-
Thr
CGT
[ENA]
¢þ
>WENV183081056
OLIZ01000050
[OLIZ] human gut metagenome; human gut
18134
18060
-
Pro
TGG
[ENA]
¢þ
>WENV183081055
OLIZ01000050
[OLIZ] human gut metagenome; human gut
18240
18313
+
Gly
TCC
[ENA]
¢þ
>WENV183081047
OLIZ01000035
[OLIZ] human gut metagenome; human gut
19366
19279
-
Ser
GCT
[ENA]
¢þ
>WENV183081049
OLIZ01000037
[OLIZ] human gut metagenome; human gut
20901
20812
-
Ser
CGA
[ENA]
¢þ
>WENV183081048
OLIZ01000037
[OLIZ] human gut metagenome; human gut
20989
20904
-
Leu
CAG
[ENA]
¢þ
>WENV183081046
OLIZ01000035
[OLIZ] human gut metagenome; human gut
24976
25049
+
Arg
ACG
[ENA]
¢þ
>WENV183081054
OLIZ01000044
[OLIZ] human gut metagenome; human gut
25264
25190
-
Ala
TGC
[ENA]
¢þ
>WENV183081053
OLIZ01000044
[OLIZ] human gut metagenome; human gut
25366
25292
-
Ile
GAT
[ENA]
¢þ
>WENV183081036
OLIZ01000017
[OLIZ] human gut metagenome; human gut
26243
26157
-
Ser
CGA
[ENA]
¢þ
>WENV183081039
OLIZ01000022
[OLIZ] human gut metagenome; human gut
28917
28843
-
Ile2
CAT
[ENA]
¢þ
>WENV183081038
OLIZ01000022
[OLIZ] human gut metagenome; human gut
29551
29623
+
Asn
GTT
[ENA]
¢þ
>WENV183081016
OLIZ01000001
[OLIZ] human gut metagenome; human gut
35892
35968
+
Leu
CAA
[ENA]
¢þ
>WENV183081020
OLIZ01000004
[OLIZ] human gut metagenome; human gut
37911
37822
-
Ser
GGA
[ENA]
¢þ
>WENV183081043
OLIZ01000033
[OLIZ] human gut metagenome; human gut
38457
38384
-
Arg
CCG
[ENA]
¢þ
>WENV183081028
OLIZ01000012
[OLIZ] human gut metagenome; human gut
38750
38678
-
Thr
CGT
[ENA]
¢þ
>WENV183081030
OLIZ01000013
[OLIZ] human gut metagenome; human gut
39974
40047
+
Ala
GGC
[ENA]
¢þ
>WENV183081026
OLIZ01000008
[OLIZ] human gut metagenome; human gut
43351
43426
+
Thr
TGT
[ENA]
¢þ
>WENV183081042
OLIZ01000029
[OLIZ] human gut metagenome; human gut
45317
45392
+
Lys
CTT
[ENA]
¢þ
>WENV183081027
OLIZ01000012
[OLIZ] human gut metagenome; human gut
46615
46530
-
Leu
AAG
[ENA]
¢þ
>WENV183081024
OLIZ01000006
[OLIZ] human gut metagenome; human gut
47691
47775
+
Leu
CAG
[ENA]
¢þ
>WENV183081037
OLIZ01000019
[OLIZ] human gut metagenome; human gut
47984
48054
+
Cys
GCA
[ENA]
¢þ
>WENV183081031
OLIZ01000014
[OLIZ] human gut metagenome; human gut
69208
69279
+
Arg
CCT
[ENA]
¢þ
>WENV183081019
OLIZ01000002
[OLIZ] human gut metagenome; human gut
85034
84963
-
Arg
CCG
[ENA]
¢þ
>WENV183081018
OLIZ01000002
[OLIZ] human gut metagenome; human gut
86550
86479
-
Gln
TTG
[ENA]
¢þ
>WENV183081017
OLIZ01000002
[OLIZ] human gut metagenome; human gut
86641
86559
-
Tyr
GTA
[ENA]
¢þ
>WENV183081023
OLIZ01000005
[OLIZ] human gut metagenome; human gut
103711
103636
-
Pro
TGG
[ENA]
¢þ
>WENV183081022
OLIZ01000005
[OLIZ] human gut metagenome; human gut
103803
103730
-
Arg
ACG
[ENA]
¢þ
>WENV183081021
OLIZ01000005
[OLIZ] human gut metagenome; human gut
103913
103840
-
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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