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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLJH] human gut metagenome; human gut
HIT:
144 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183087326
OLJH01000071
[OLJH] human gut metagenome; human gut
3
78
+
Gly
GCC
[ENA]
¢þ
>WENV183087320
OLJH01000017
[OLJH] human gut metagenome; human gut
7
82
+
Ile2
CAT
[ENA]
¢þ
>WENV183087421
OLJH01002448
[OLJH] human gut metagenome; human gut
67
141
+
Val
TAC
[ENA]
¢þ
>WENV183087372
OLJH01000604
[OLJH] human gut metagenome; human gut
70
155
+
Leu
CAG
[ENA]
¢þ
>WENV183087369
OLJH01000575
[OLJH] human gut metagenome; human gut
83
158
+
Val
TAC
[ENA]
¢þ
>WENV183087322
OLJH01000033
[OLJH] human gut metagenome; human gut
86
172
+
Leu
CAG
[ENA]
¢þ
>WENV183087348
OLJH01000148
[OLJH] human gut metagenome; human gut
87
12
-
Gly
GCC
[ENA]
¢þ
>WENV183087363
OLJH01000428
[OLJH] human gut metagenome; human gut
88
174
+
Leu
CAG
[ENA]
¢þ
>WENV183087346
OLJH01000140
[OLJH] human gut metagenome; human gut
114
39
-
Phe
GAA
[ENA]
¢þ
>WENV183087366
OLJH01000471
[OLJH] human gut metagenome; human gut
127
200
+
Ala
GGC
[ENA]
¢þ
>WENV183087414
OLJH01001744
[OLJH] human gut metagenome; human gut
134
59
-
Asn
GTT
[ENA]
¢þ
>WENV183087445
OLJH01004622
[OLJH] human gut metagenome; human gut
145
70
-
His
GTG
[ENA]
¢þ
>WENV183087422
OLJH01002448
[OLJH] human gut metagenome; human gut
146
220
+
Lys
TTT
[ENA]
¢þ
>WENV183087439
OLJH01003872
[OLJH] human gut metagenome; human gut
151
78
-
His
GTG
[ENA]
¢þ
>WENV183087370
OLJH01000575
[OLJH] human gut metagenome; human gut
163
238
+
Lys
TTT
[ENA]
¢þ
>WENV183087384
OLJH01000769
[OLJH] human gut metagenome; human gut
171
96
-
Val
TAC
[ENA]
¢þ
>WENV183087446
OLJH01004763
[OLJH] human gut metagenome; human gut
181
256
+
Lys
TTT
[ENA]
¢þ
>WENV183087371
OLJH01000599
[OLJH] human gut metagenome; human gut
199
273
+
Arg
CCT
[ENA]
¢þ
>WENV183087373
OLJH01000604
[OLJH] human gut metagenome; human gut
201
277
+
Pro
TGG
[ENA]
¢þ
>WENV183087441
OLJH01004266
[OLJH] human gut metagenome; human gut
208
135
-
Glu
TTC
[ENA]
¢þ
>WENV183087375
OLJH01000634
[OLJH] human gut metagenome; human gut
221
137
-
Tyr
GTA
[ENA]
¢þ
>WENV183087444
OLJH01004622
[OLJH] human gut metagenome; human gut
226
150
-
Arg
TCT
[ENA]
¢þ
>WENV183087423
OLJH01002448
[OLJH] human gut metagenome; human gut
235
318
+
Leu
TAG
[ENA]
¢þ
>WENV183087438
OLJH01003872
[OLJH] human gut metagenome; human gut
261
188
-
Trp
CCA
[ENA]
¢þ
>WENV183087447
OLJH01004763
[OLJH] human gut metagenome; human gut
267
350
+
Leu
TAG
[ENA]
¢þ
>WENV183087374
OLJH01000634
[OLJH] human gut metagenome; human gut
307
232
-
Thr
TGT
[ENA]
¢þ
>WENV183087424
OLJH01002448
[OLJH] human gut metagenome; human gut
324
399
+
Thr
TGT
[ENA]
¢þ
>WENV183087437
OLJH01003872
[OLJH] human gut metagenome; human gut
347
265
-
Tyr
GTA
[ENA]
¢þ
>WENV183087448
OLJH01004763
[OLJH] human gut metagenome; human gut
377
451
+
Gly
GCC
[ENA]
¢þ
>WENV183087443
OLJH01004622
[OLJH] human gut metagenome; human gut
379
306
-
Gly
TCC
[ENA]
¢þ
>WENV183087425
OLJH01002448
[OLJH] human gut metagenome; human gut
404
475
+
Gly
GCC
[ENA]
¢þ
>WENV183087436
OLJH01003872
[OLJH] human gut metagenome; human gut
424
352
-
Phe
GAA
[ENA]
¢þ
>WENV183087440
OLJH01003989
[OLJH] human gut metagenome; human gut
430
355
-
Ala
GGC
[ENA]
¢þ
>WENV183087442
OLJH01004622
[OLJH] human gut metagenome; human gut
459
384
-
Pro
TGG
[ENA]
¢þ
>WENV183087398
OLJH01001167
[OLJH] human gut metagenome; human gut
473
399
-
Val
GAC
[ENA]
¢þ
>WENV183087434
OLJH01003563
[OLJH] human gut metagenome; human gut
474
400
-
Leu
TAA
[ENA]
¢þ
>WENV183087401
OLJH01001392
[OLJH] human gut metagenome; human gut
480
407
-
Arg
CCG
[ENA]
¢þ
>WENV183087426
OLJH01002448
[OLJH] human gut metagenome; human gut
491
576
+
Leu
TAA
[ENA]
¢þ
>WENV183087407
OLJH01001696
[OLJH] human gut metagenome; human gut
496
571
+
Asn
GTT
[ENA]
¢þ
>WENV183087420
OLJH01002442
[OLJH] human gut metagenome; human gut
508
433
-
Ala
TGC
[ENA]
¢þ
>WENV183087432
OLJH01003133
[OLJH] human gut metagenome; human gut
514
431
-
Leu
CAA
[ENA]
¢þ
>WENV183087388
OLJH01000944
[OLJH] human gut metagenome; human gut
534
460
-
Ala
CGC
[ENA]
¢þ
>WENV183087433
OLJH01003370
[OLJH] human gut metagenome; human gut
534
460
-
Pro
GGG
[ENA]
¢þ
>WENV183087435
OLJH01003872
[OLJH] human gut metagenome; human gut
545
470
-
Asp
GTC
[ENA]
¢þ
>WENV183087397
OLJH01001167
[OLJH] human gut metagenome; human gut
545
474
-
Cys
GCA
[ENA]
¢þ
>WENV183087427
OLJH01002448
[OLJH] human gut metagenome; human gut
591
664
+
Arg
ACG
[ENA]
¢þ
>WENV183087408
OLJH01001696
[OLJH] human gut metagenome; human gut
613
703
+
Ser
GGA
[ENA]
¢þ
>WENV183087385
OLJH01000835
[OLJH] human gut metagenome; human gut
616
691
+
Arg
TCT
[ENA]
¢þ
>WENV183087429
OLJH01002541
[OLJH] human gut metagenome; human gut
622
697
+
Ala
TGC
[ENA]
¢þ
>WENV183087396
OLJH01001167
[OLJH] human gut metagenome; human gut
646
573
-
Gly
GCC
[ENA]
¢þ
>WENV183087431
OLJH01002847
[OLJH] human gut metagenome; human gut
662
576
-
Ser
CGA
[ENA]
¢þ
>WENV183087419
OLJH01002442
[OLJH] human gut metagenome; human gut
696
620
-
Ile
GAT
[ENA]
¢þ
>WENV183087430
OLJH01002541
[OLJH] human gut metagenome; human gut
703
779
+
Ile
GAT
[ENA]
¢þ
>WENV183087409
OLJH01001696
[OLJH] human gut metagenome; human gut
719
792
+
Glu
TTC
[ENA]
¢þ
>WENV183087428
OLJH01002448
[OLJH] human gut metagenome; human gut
754
827
+
Pro
TGG
[ENA]
¢þ
>WENV183087367
OLJH01000505
[OLJH] human gut metagenome; human gut
757
833
+
Pro
CGG
[ENA]
¢þ
>WENV183087402
OLJH01001449
[OLJH] human gut metagenome; human gut
775
856
+
Tyr
GTA
[ENA]
¢þ
>WENV183087410
OLJH01001696
[OLJH] human gut metagenome; human gut
804
893
+
Ser
TGA
[ENA]
¢þ
>WENV183087418
OLJH01002092
[OLJH] human gut metagenome; human gut
834
920
+
Leu
GAG
[ENA]
¢þ
>WENV183087406
OLJH01001520
[OLJH] human gut metagenome; human gut
885
802
-
Leu
TAG
[ENA]
¢þ
>WENV183087389
OLJH01001056
[OLJH] human gut metagenome; human gut
893
808
-
Ser
TGA
[ENA]
¢þ
>WENV183087411
OLJH01001696
[OLJH] human gut metagenome; human gut
926
1001
+
fMet
CAT
[ENA]
¢þ
>WENV183087417
OLJH01001919
[OLJH] human gut metagenome; human gut
955
865
-
Ser
GCT
[ENA]
¢þ
>WENV183087394
OLJH01001155
[OLJH] human gut metagenome; human gut
968
1044
+
Arg
TCT
[ENA]
¢þ
>WENV183087416
OLJH01001876
[OLJH] human gut metagenome; human gut
1000
925
-
Val
TAC
[ENA]
¢þ
>WENV183087405
OLJH01001498
[OLJH] human gut metagenome; human gut
1031
1105
+
Ile2
CAT
[ENA]
¢þ
>WENV183087412
OLJH01001696
[OLJH] human gut metagenome; human gut
1039
1115
+
Asp
GTC
[ENA]
¢þ
>WENV183087403
OLJH01001449
[OLJH] human gut metagenome; human gut
1060
1133
+
Thr
GGT
[ENA]
¢þ
>WENV183087399
OLJH01001179
[OLJH] human gut metagenome; human gut
1064
985
-
Gln
TTG
[ENA]
¢þ
>WENV183087415
OLJH01001753
[OLJH] human gut metagenome; human gut
1103
1028
-
Trp
CCA
[ENA]
¢þ
>WENV183087413
OLJH01001696
[OLJH] human gut metagenome; human gut
1117
1187
+
Gly
TCC
[ENA]
¢þ
>WENV183087395
OLJH01001167
[OLJH] human gut metagenome; human gut
1146
1220
+
Val
CAC
[ENA]
¢þ
>WENV183087404
OLJH01001449
[OLJH] human gut metagenome; human gut
1196
1270
+
Met
CAT
[ENA]
¢þ
>WENV183087392
OLJH01001088
[OLJH] human gut metagenome; human gut
1279
1354
+
Thr
CGT
[ENA]
¢þ
>WENV183087400
OLJH01001308
[OLJH] human gut metagenome; human gut
1404
1329
-
Thr
GGT
[ENA]
¢þ
>WENV183087368
OLJH01000557
[OLJH] human gut metagenome; human gut
1462
1386
-
Ile
GAT
[ENA]
¢þ
>WENV183087391
OLJH01001087
[OLJH] human gut metagenome; human gut
1565
1488
-
Phe
GAA
[ENA]
¢þ
>WENV183087330
OLJH01000078
[OLJH] human gut metagenome; human gut
1575
1499
-
Val
GAC
[ENA]
¢þ
>WENV183087383
OLJH01000737
[OLJH] human gut metagenome; human gut
1579
1506
-
Arg
ACG
[ENA]
¢þ
>WENV183087329
OLJH01000078
[OLJH] human gut metagenome; human gut
1656
1580
-
Val
GAC
[ENA]
¢þ
>WENV183087357
OLJH01000312
[OLJH] human gut metagenome; human gut
1685
1596
-
Ser
CGA
[ENA]
¢þ
>WENV183087390
OLJH01001087
[OLJH] human gut metagenome; human gut
1699
1625
-
Asp
GTC
[ENA]
¢þ
>WENV183087393
OLJH01001134
[OLJH] human gut metagenome; human gut
1720
1792
+
Gln
CTG
[ENA]
¢þ
>WENV183087328
OLJH01000078
[OLJH] human gut metagenome; human gut
1737
1661
-
Val
GAC
[ENA]
¢þ
>WENV183087387
OLJH01000927
[OLJH] human gut metagenome; human gut
1819
1745
-
Lys
CTT
[ENA]
¢þ
>WENV183087386
OLJH01000909
[OLJH] human gut metagenome; human gut
1838
1909
+
Gly
CCC
[ENA]
¢þ
>WENV183087382
OLJH01000737
[OLJH] human gut metagenome; human gut
1878
1788
-
Ser
GCT
[ENA]
¢þ
>WENV183087379
OLJH01000707
[OLJH] human gut metagenome; human gut
1881
1807
-
Pro
TGG
[ENA]
¢þ
>WENV183087381
OLJH01000731
[OLJH] human gut metagenome; human gut
2078
2161
+
Leu
CAG
[ENA]
¢þ
>WENV183087340
OLJH01000113
[OLJH] human gut metagenome; human gut
2201
2125
-
Arg
TCT
[ENA]
¢þ
>WENV183087355
OLJH01000312
[OLJH] human gut metagenome; human gut
2677
2752
+
Asn
GTT
[ENA]
¢þ
>WENV183087361
OLJH01000414
[OLJH] human gut metagenome; human gut
2740
2667
-
Gly
CCC
[ENA]
¢þ
>WENV183087376
OLJH01000653
[OLJH] human gut metagenome; human gut
2789
2705
-
Leu
CAA
[ENA]
¢þ
>WENV183087380
OLJH01000720
[OLJH] human gut metagenome; human gut
3100
3187
+
Ser
GGA
[ENA]
¢þ
>WENV183087347
OLJH01000147
[OLJH] human gut metagenome; human gut
3125
3041
-
Leu
CAA
[ENA]
¢þ
>WENV183087378
OLJH01000706
[OLJH] human gut metagenome; human gut
3146
3071
-
Lys
TTT
[ENA]
¢þ
>WENV183087349
OLJH01000163
[OLJH] human gut metagenome; human gut
3318
3394
+
Asp
GTC
[ENA]
¢þ
>WENV183087365
OLJH01000456
[OLJH] human gut metagenome; human gut
3325
3401
+
Asp
GTC
[ENA]
¢þ
>WENV183087377
OLJH01000672
[OLJH] human gut metagenome; human gut
3415
3340
-
Trp
CCA
[ENA]
¢þ
>WENV183087325
OLJH01000070
[OLJH] human gut metagenome; human gut
3439
3512
+
Gly
CCC
[ENA]
¢þ
>WENV183087352
OLJH01000191
[OLJH] human gut metagenome; human gut
4036
3963
-
Thr
CGT
[ENA]
¢þ
>WENV183087362
OLJH01000416
[OLJH] human gut metagenome; human gut
4876
4800
-
fMet
CAT
[ENA]
¢þ
>WENV183087364
OLJH01000448
[OLJH] human gut metagenome; human gut
6081
6005
-
Asp
GTC
[ENA]
¢þ
>WENV183087359
OLJH01000359
[OLJH] human gut metagenome; human gut
6646
6721
+
Thr
CGT
[ENA]
¢þ
>WENV183087332
OLJH01000084
[OLJH] human gut metagenome; human gut
7257
7182
-
Asn
GTT
[ENA]
¢þ
>WENV183087356
OLJH01000312
[OLJH] human gut metagenome; human gut
7918
7993
+
Asn
GTT
[ENA]
¢þ
>WENV183087358
OLJH01000355
[OLJH] human gut metagenome; human gut
7919
8003
+
Tyr
GTA
[ENA]
¢þ
>WENV183087360
OLJH01000360
[OLJH] human gut metagenome; human gut
7928
8012
+
Tyr
GTA
[ENA]
¢þ
>WENV183087353
OLJH01000226
[OLJH] human gut metagenome; human gut
8508
8580
+
Arg
CCT
[ENA]
¢þ
>WENV183087331
OLJH01000084
[OLJH] human gut metagenome; human gut
9015
9090
+
Asn
GTT
[ENA]
¢þ
>WENV183087351
OLJH01000184
[OLJH] human gut metagenome; human gut
9552
9476
-
fMet
CAT
[ENA]
¢þ
>WENV183087339
OLJH01000104
[OLJH] human gut metagenome; human gut
9792
9876
+
Leu
CAA
[ENA]
¢þ
>WENV183087345
OLJH01000135
[OLJH] human gut metagenome; human gut
10896
10971
+
Phe
GAA
[ENA]
¢þ
>WENV183087321
OLJH01000023
[OLJH] human gut metagenome; human gut
11917
12011
+
SeC
TCA
[ENA]
¢þ
>WENV183087354
OLJH01000258
[OLJH] human gut metagenome; human gut
12503
12579
+
fMet
CAT
[ENA]
¢þ
>WENV183087350
OLJH01000184
[OLJH] human gut metagenome; human gut
13569
13483
-
Leu
GAG
[ENA]
¢þ
>WENV183087341
OLJH01000132
[OLJH] human gut metagenome; human gut
13974
14050
+
Pro
TGG
[ENA]
¢þ
>WENV183087334
OLJH01000094
[OLJH] human gut metagenome; human gut
15020
14944
-
Val
GAC
[ENA]
¢þ
>WENV183087333
OLJH01000094
[OLJH] human gut metagenome; human gut
15101
15025
-
Val
GAC
[ENA]
¢þ
>WENV183087327
OLJH01000074
[OLJH] human gut metagenome; human gut
18874
18950
+
Pro
CGG
[ENA]
¢þ
>WENV183087342
OLJH01000132
[OLJH] human gut metagenome; human gut
21686
21761
+
Thr
TGT
[ENA]
¢þ
>WENV183087343
OLJH01000132
[OLJH] human gut metagenome; human gut
21770
21854
+
Tyr
GTA
[ENA]
¢þ
>WENV183087344
OLJH01000132
[OLJH] human gut metagenome; human gut
21972
22046
+
Gly
TCC
[ENA]
¢þ
>WENV183087309
OLJH01000012
[OLJH] human gut metagenome; human gut
23857
23933
+
Arg
TCT
[ENA]
¢þ
>WENV183087338
OLJH01000100
[OLJH] human gut metagenome; human gut
25955
25881
-
Gln
CTG
[ENA]
¢þ
>WENV183087337
OLJH01000100
[OLJH] human gut metagenome; human gut
26079
26003
-
Met
CAT
[ENA]
¢þ
>WENV183087336
OLJH01000100
[OLJH] human gut metagenome; human gut
26177
26103
-
Gln
TTG
[ENA]
¢þ
>WENV183087335
OLJH01000100
[OLJH] human gut metagenome; human gut
26288
26214
-
Gln
TTG
[ENA]
¢þ
>WENV183087323
OLJH01000035
[OLJH] human gut metagenome; human gut
26723
26817
+
SeC
TCA
[ENA]
¢þ
>WENV183087324
OLJH01000068
[OLJH] human gut metagenome; human gut
30512
30587
+
Phe
GAA
[ENA]
¢þ
>WENV183087306
OLJH01000008
[OLJH] human gut metagenome; human gut
32367
32454
+
Ser
GGA
[ENA]
¢þ
>WENV183087307
OLJH01000008
[OLJH] human gut metagenome; human gut
35272
35359
+
Ser
GGA
[ENA]
¢þ
>WENV183087310
OLJH01000013
[OLJH] human gut metagenome; human gut
44610
44684
+
Arg
CCT
[ENA]
¢þ
>WENV183087319
OLJH01000015
[OLJH] human gut metagenome; human gut
52057
52133
+
Pro
GGG
[ENA]
¢þ
>WENV183087317
OLJH01000014
[OLJH] human gut metagenome; human gut
64035
64122
+
Ser
TGA
[ENA]
¢þ
>WENV183087316
OLJH01000013
[OLJH] human gut metagenome; human gut
65082
65007
-
Ala
GGC
[ENA]
¢þ
>WENV183087315
OLJH01000013
[OLJH] human gut metagenome; human gut
65199
65124
-
Ala
GGC
[ENA]
¢þ
>WENV183087305
OLJH01000005
[OLJH] human gut metagenome; human gut
65896
65972
+
Pro
GGG
[ENA]
¢þ
>WENV183087311
OLJH01000013
[OLJH] human gut metagenome; human gut
67898
67973
+
Val
TAC
[ENA]
¢þ
>WENV183087312
OLJH01000013
[OLJH] human gut metagenome; human gut
68019
68094
+
Val
TAC
[ENA]
¢þ
>WENV183087313
OLJH01000013
[OLJH] human gut metagenome; human gut
68141
68216
+
Val
TAC
[ENA]
¢þ
>WENV183087314
OLJH01000013
[OLJH] human gut metagenome; human gut
68221
68296
+
Lys
TTT
[ENA]
¢þ
>WENV183087318
OLJH01000014
[OLJH] human gut metagenome; human gut
70847
70934
+
Ser
TGA
[ENA]
¢þ
>WENV183087308
OLJH01000008
[OLJH] human gut metagenome; human gut
78930
78843
-
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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