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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLJK] human gut metagenome; human gut
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183087511
OLJK01000025
[OLJK] human gut metagenome; human gut
58
133
+
Thr
GGT
[ENA]
¢þ
>WENV183087524
OLJK01000128
[OLJK] human gut metagenome; human gut
70
146
+
Met
CAT
[ENA]
¢þ
>WENV183087503
OLJK01000001
[OLJK] human gut metagenome; human gut
83
7
-
Arg
ACG
[ENA]
¢þ
>WENV183087530
OLJK01000140
[OLJK] human gut metagenome; human gut
102
178
+
Asp
GTC
[ENA]
¢þ
>WENV183087538
OLJK01000192
[OLJK] human gut metagenome; human gut
109
182
+
Cys
GCA
[ENA]
¢þ
>WENV183087502
OLJK01000001
[OLJK] human gut metagenome; human gut
179
87
-
Ser
GCT
[ENA]
¢þ
>WENV183087525
OLJK01000128
[OLJK] human gut metagenome; human gut
195
269
+
Gln
CTG
[ENA]
¢þ
>WENV183087539
OLJK01000192
[OLJK] human gut metagenome; human gut
195
281
+
Leu
TAA
[ENA]
¢þ
>WENV183087526
OLJK01000128
[OLJK] human gut metagenome; human gut
307
381
+
Gln
CTG
[ENA]
¢þ
>WENV183087544
OLJK01000220
[OLJK] human gut metagenome; human gut
344
269
-
Thr
GGT
[ENA]
¢þ
>WENV183087543
OLJK01000220
[OLJK] human gut metagenome; human gut
425
351
-
Gly
TCC
[ENA]
¢þ
>WENV183087542
OLJK01000220
[OLJK] human gut metagenome; human gut
626
542
-
Tyr
GTA
[ENA]
¢þ
>WENV183087541
OLJK01000220
[OLJK] human gut metagenome; human gut
710
635
-
Thr
TGT
[ENA]
¢þ
>WENV183087523
OLJK01000095
[OLJK] human gut metagenome; human gut
1524
1440
-
Leu
CAA
[ENA]
¢þ
>WENV183087546
OLJK01000317
[OLJK] human gut metagenome; human gut
1689
1600
-
Ser
CGA
[ENA]
¢þ
>WENV183087545
OLJK01000280
[OLJK] human gut metagenome; human gut
1792
1867
+
Asn
GTT
[ENA]
¢þ
>WENV183087534
OLJK01000174
[OLJK] human gut metagenome; human gut
2264
2188
-
Val
GAC
[ENA]
¢þ
>WENV183087533
OLJK01000174
[OLJK] human gut metagenome; human gut
2345
2269
-
Val
GAC
[ENA]
¢þ
>WENV183087508
OLJK01000008
[OLJK] human gut metagenome; human gut
2915
2839
-
Arg
TCT
[ENA]
¢þ
>WENV183087540
OLJK01000193
[OLJK] human gut metagenome; human gut
3261
3336
+
Thr
CGT
[ENA]
¢þ
>WENV183087518
OLJK01000038
[OLJK] human gut metagenome; human gut
3461
3385
-
Pro
TGG
[ENA]
¢þ
>WENV183087517
OLJK01000038
[OLJK] human gut metagenome; human gut
3590
3504
-
Leu
CAG
[ENA]
¢þ
>WENV183087516
OLJK01000038
[OLJK] human gut metagenome; human gut
3686
3611
-
His
GTG
[ENA]
¢þ
>WENV183087537
OLJK01000179
[OLJK] human gut metagenome; human gut
3697
3608
-
Ser
CGA
[ENA]
¢þ
>WENV183087527
OLJK01000129
[OLJK] human gut metagenome; human gut
3814
3889
+
Ile2
CAT
[ENA]
¢þ
>WENV183087515
OLJK01000038
[OLJK] human gut metagenome; human gut
3821
3745
-
Arg
CCG
[ENA]
¢þ
>WENV183087513
OLJK01000032
[OLJK] human gut metagenome; human gut
3840
3746
-
SeC
TCA
[ENA]
¢þ
>WENV183087528
OLJK01000129
[OLJK] human gut metagenome; human gut
3897
3973
+
Arg
TCG
[ENA]
¢þ
>WENV183087529
OLJK01000129
[OLJK] human gut metagenome; human gut
3987
4063
+
Arg
TCT
[ENA]
¢þ
>WENV183087535
OLJK01000176
[OLJK] human gut metagenome; human gut
4462
4387
-
Ala
GGC
[ENA]
¢þ
>WENV183087536
OLJK01000179
[OLJK] human gut metagenome; human gut
4689
4764
+
Asn
GTT
[ENA]
¢þ
>WENV183087510
OLJK01000022
[OLJK] human gut metagenome; human gut
6822
6895
+
Gly
CCC
[ENA]
¢þ
>WENV183087531
OLJK01000140
[OLJK] human gut metagenome; human gut
8327
8403
+
Asp
GTC
[ENA]
¢þ
>WENV183087532
OLJK01000147
[OLJK] human gut metagenome; human gut
9423
9498
+
Lys
TTT
[ENA]
¢þ
>WENV183087521
OLJK01000086
[OLJK] human gut metagenome; human gut
9608
9534
-
Arg
CCT
[ENA]
¢þ
>WENV183087522
OLJK01000089
[OLJK] human gut metagenome; human gut
9861
9777
-
Tyr
GTA
[ENA]
¢þ
>WENV183087520
OLJK01000079
[OLJK] human gut metagenome; human gut
19462
19537
+
Gly
GCC
[ENA]
¢þ
>WENV183087519
OLJK01000065
[OLJK] human gut metagenome; human gut
21744
21831
+
Ser
TGA
[ENA]
¢þ
>WENV183087509
OLJK01000012
[OLJK] human gut metagenome; human gut
28479
28403
-
Pro
GGG
[ENA]
¢þ
>WENV183087506
OLJK01000004
[OLJK] human gut metagenome; human gut
29220
29144
-
fMet
CAT
[ENA]
¢þ
>WENV183087505
OLJK01000004
[OLJK] human gut metagenome; human gut
33087
33001
-
Leu
GAG
[ENA]
¢þ
>WENV183087512
OLJK01000027
[OLJK] human gut metagenome; human gut
35808
35721
-
Ser
GGA
[ENA]
¢þ
>WENV183087514
OLJK01000038
[OLJK] human gut metagenome; human gut
38365
38290
-
Trp
CCA
[ENA]
¢þ
>WENV183087507
OLJK01000006
[OLJK] human gut metagenome; human gut
50283
50208
-
Ile2
CAT
[ENA]
¢þ
>WENV183087504
OLJK01000003
[OLJK] human gut metagenome; human gut
71496
71420
-
Pro
CGG
[ENA]
¢þ
>WENV183087501
OLJK01000001
[OLJK] human gut metagenome; human gut
121007
121083
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK