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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLJP] human gut metagenome; human gut
HIT:
58 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183087844
OLJP01000092
[OLJP] human gut metagenome; human gut
93
169
+
Pro
TGG
[ENA]
¢þ
>WENV183087879
OLJP01000792
[OLJP] human gut metagenome; human gut
94
167
+
Cys
GCA
[ENA]
¢þ
>WENV183087854
OLJP01000355
[OLJP] human gut metagenome; human gut
107
182
+
Trp
CCA
[ENA]
¢þ
>WENV183087880
OLJP01000792
[OLJP] human gut metagenome; human gut
181
267
+
Leu
TAA
[ENA]
¢þ
>WENV183087878
OLJP01000708
[OLJP] human gut metagenome; human gut
318
243
-
Ala
TGC
[ENA]
¢þ
>WENV183087889
OLJP01001678
[OLJP] human gut metagenome; human gut
320
245
-
Lys
TTT
[ENA]
¢þ
>WENV183087890
OLJP01001737
[OLJP] human gut metagenome; human gut
337
424
+
Ser
GGA
[ENA]
¢þ
>WENV183087847
OLJP01000167
[OLJP] human gut metagenome; human gut
375
462
+
Ser
TGA
[ENA]
¢þ
>WENV183087888
OLJP01001678
[OLJP] human gut metagenome; human gut
428
353
-
Val
TAC
[ENA]
¢þ
>WENV183087887
OLJP01001578
[OLJP] human gut metagenome; human gut
453
527
+
Val
TAC
[ENA]
¢þ
>WENV183087881
OLJP01000799
[OLJP] human gut metagenome; human gut
659
735
+
Met
CAT
[ENA]
¢þ
>WENV183087882
OLJP01000799
[OLJP] human gut metagenome; human gut
744
828
+
Leu
TAG
[ENA]
¢þ
>WENV183087886
OLJP01000967
[OLJP] human gut metagenome; human gut
842
915
+
Gly
CCC
[ENA]
¢þ
>WENV183087883
OLJP01000799
[OLJP] human gut metagenome; human gut
864
938
+
Gln
TTG
[ENA]
¢þ
>WENV183087884
OLJP01000799
[OLJP] human gut metagenome; human gut
973
1047
+
Gln
CTG
[ENA]
¢þ
>WENV183087871
OLJP01000698
[OLJP] human gut metagenome; human gut
977
1066
+
Ser
CGA
[ENA]
¢þ
>WENV183087845
OLJP01000099
[OLJP] human gut metagenome; human gut
1072
997
-
Thr
CGT
[ENA]
¢þ
>WENV183087870
OLJP01000680
[OLJP] human gut metagenome; human gut
1179
1254
+
Ile2
CAT
[ENA]
¢þ
>WENV183087848
OLJP01000195
[OLJP] human gut metagenome; human gut
1406
1334
-
Arg
CCT
[ENA]
¢þ
>WENV183087850
OLJP01000303
[OLJP] human gut metagenome; human gut
1810
1726
-
Leu
CAA
[ENA]
¢þ
>WENV183087885
OLJP01000878
[OLJP] human gut metagenome; human gut
1823
1747
-
Ile
GAT
[ENA]
¢þ
>WENV183087833
OLJP01000004
[OLJP] human gut metagenome; human gut
1979
1893
-
Leu
GAG
[ENA]
¢þ
>WENV183087877
OLJP01000708
[OLJP] human gut metagenome; human gut
2069
1993
-
Met
CAT
[ENA]
¢þ
>WENV183087855
OLJP01000398
[OLJP] human gut metagenome; human gut
2098
2022
-
Pro
GGG
[ENA]
¢þ
>WENV183087876
OLJP01000708
[OLJP] human gut metagenome; human gut
2151
2076
-
Phe
GAA
[ENA]
¢þ
>WENV183087867
OLJP01000611
[OLJP] human gut metagenome; human gut
2155
2079
-
Arg
TCT
[ENA]
¢þ
>WENV183087868
OLJP01000615
[OLJP] human gut metagenome; human gut
2219
2145
-
Glu
TTC
[ENA]
¢þ
>WENV183087875
OLJP01000708
[OLJP] human gut metagenome; human gut
2243
2155
-
Ser
TGA
[ENA]
¢þ
>WENV183087874
OLJP01000708
[OLJP] human gut metagenome; human gut
2321
2246
-
Lys
TTT
[ENA]
¢þ
>WENV183087873
OLJP01000708
[OLJP] human gut metagenome; human gut
2408
2333
-
Gln
TTG
[ENA]
¢þ
>WENV183087853
OLJP01000345
[OLJP] human gut metagenome; human gut
2478
2403
-
Lys
TTT
[ENA]
¢þ
>WENV183087872
OLJP01000708
[OLJP] human gut metagenome; human gut
2492
2416
-
Arg
TCT
[ENA]
¢þ
>WENV183087852
OLJP01000345
[OLJP] human gut metagenome; human gut
2557
2482
-
Val
TAC
[ENA]
¢þ
>WENV183087869
OLJP01000642
[OLJP] human gut metagenome; human gut
2775
2699
-
Arg
ACG
[ENA]
¢þ
>WENV183087856
OLJP01000462
[OLJP] human gut metagenome; human gut
3236
3310
+
Asn
GTT
[ENA]
¢þ
>WENV183087857
OLJP01000462
[OLJP] human gut metagenome; human gut
3316
3402
+
Leu
TAA
[ENA]
¢þ
>WENV183087858
OLJP01000462
[OLJP] human gut metagenome; human gut
3417
3492
+
fMet
CAT
[ENA]
¢þ
>WENV183087859
OLJP01000462
[OLJP] human gut metagenome; human gut
3500
3574
+
Glu
TTC
[ENA]
¢þ
>WENV183087860
OLJP01000462
[OLJP] human gut metagenome; human gut
3584
3657
+
Gly
TCC
[ENA]
¢þ
>WENV183087835
OLJP01000014
[OLJP] human gut metagenome; human gut
3619
3694
+
Thr
TGT
[ENA]
¢þ
>WENV183087861
OLJP01000462
[OLJP] human gut metagenome; human gut
3663
3738
+
Val
TAC
[ENA]
¢þ
>WENV183087836
OLJP01000014
[OLJP] human gut metagenome; human gut
3705
3789
+
Tyr
GTA
[ENA]
¢þ
>WENV183087846
OLJP01000126
[OLJP] human gut metagenome; human gut
3724
3810
+
Leu
CAG
[ENA]
¢þ
>WENV183087862
OLJP01000462
[OLJP] human gut metagenome; human gut
3744
3820
+
Asp
GTC
[ENA]
¢þ
>WENV183087863
OLJP01000462
[OLJP] human gut metagenome; human gut
3831
3905
+
Thr
TGT
[ENA]
¢þ
>WENV183087837
OLJP01000014
[OLJP] human gut metagenome; human gut
3909
3983
+
Gly
TCC
[ENA]
¢þ
>WENV183087864
OLJP01000462
[OLJP] human gut metagenome; human gut
3920
4004
+
Tyr
GTA
[ENA]
¢þ
>WENV183087838
OLJP01000014
[OLJP] human gut metagenome; human gut
3989
4064
+
Thr
GGT
[ENA]
¢þ
>WENV183087865
OLJP01000462
[OLJP] human gut metagenome; human gut
4014
4097
+
Leu
TAG
[ENA]
¢þ
>WENV183087839
OLJP01000020
[OLJP] human gut metagenome; human gut
4092
4167
+
Gly
GCC
[ENA]
¢þ
>WENV183087866
OLJP01000462
[OLJP] human gut metagenome; human gut
4121
4195
+
Gly
GCC
[ENA]
¢þ
>WENV183087843
OLJP01000079
[OLJP] human gut metagenome; human gut
4200
4294
+
SeC
TCA
[ENA]
¢þ
>WENV183087851
OLJP01000345
[OLJP] human gut metagenome; human gut
5266
5341
+
Ala
GGC
[ENA]
¢þ
>WENV183087842
OLJP01000069
[OLJP] human gut metagenome; human gut
5401
5326
-
Asn
GTT
[ENA]
¢þ
>WENV183087849
OLJP01000197
[OLJP] human gut metagenome; human gut
6015
5939
-
Asp
GTC
[ENA]
¢þ
>WENV183087841
OLJP01000069
[OLJP] human gut metagenome; human gut
7178
7253
+
Asn
GTT
[ENA]
¢þ
>WENV183087840
OLJP01000034
[OLJP] human gut metagenome; human gut
14987
15063
+
Pro
CGG
[ENA]
¢þ
>WENV183087834
OLJP01000009
[OLJP] human gut metagenome; human gut
18740
18664
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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