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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLJZ] human gut metagenome; human gut
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183090394
OLJZ01000454
[OLJZ] human gut metagenome; human gut
64
148
+
Leu
TAG
[ENA]
¢þ
>WENV183090415
OLJZ01003205
[OLJZ] human gut metagenome; human gut
105
15
-
Ser
CGA
[ENA]
¢þ
>WENV183090407
OLJZ01000838
[OLJZ] human gut metagenome; human gut
126
43
-
Leu
TAG
[ENA]
¢þ
>WENV183090420
OLJZ01003481
[OLJZ] human gut metagenome; human gut
145
72
-
Cys
GCA
[ENA]
¢þ
>WENV183090414
OLJZ01002111
[OLJZ] human gut metagenome; human gut
167
92
-
Gly
GCC
[ENA]
¢þ
>WENV183090395
OLJZ01000454
[OLJZ] human gut metagenome; human gut
172
246
+
Gln
TTG
[ENA]
¢þ
>WENV183090384
OLJZ01000219
[OLJZ] human gut metagenome; human gut
179
254
+
Val
TAC
[ENA]
¢þ
>WENV183090406
OLJZ01000838
[OLJZ] human gut metagenome; human gut
212
137
-
Lys
TTT
[ENA]
¢þ
>WENV183090385
OLJZ01000219
[OLJZ] human gut metagenome; human gut
259
334
+
Lys
TTT
[ENA]
¢þ
>WENV183090396
OLJZ01000454
[OLJZ] human gut metagenome; human gut
270
346
+
Met
CAT
[ENA]
¢þ
>WENV183090405
OLJZ01000838
[OLJZ] human gut metagenome; human gut
294
220
-
Gln
TTG
[ENA]
¢þ
>WENV183090404
OLJZ01000838
[OLJZ] human gut metagenome; human gut
375
300
-
His
GTG
[ENA]
¢þ
>WENV183090419
OLJZ01003481
[OLJZ] human gut metagenome; human gut
383
310
-
Gly
TCC
[ENA]
¢þ
>WENV183090397
OLJZ01000454
[OLJZ] human gut metagenome; human gut
394
468
+
Gln
CTG
[ENA]
¢þ
>WENV183090411
OLJZ01001562
[OLJZ] human gut metagenome; human gut
426
512
+
Leu
GAG
[ENA]
¢þ
>WENV183090421
OLJZ01003614
[OLJZ] human gut metagenome; human gut
452
377
-
Thr
CGT
[ENA]
¢þ
>WENV183090403
OLJZ01000838
[OLJZ] human gut metagenome; human gut
456
380
-
Arg
TCT
[ENA]
¢þ
>WENV183090422
OLJZ01004813
[OLJZ] human gut metagenome; human gut
457
370
-
Ser
TGA
[ENA]
¢þ
>WENV183090418
OLJZ01003481
[OLJZ] human gut metagenome; human gut
477
389
-
Leu
TAA
[ENA]
¢þ
>WENV183090416
OLJZ01003389
[OLJZ] human gut metagenome; human gut
505
581
+
Val
GAC
[ENA]
¢þ
>WENV183090402
OLJZ01000838
[OLJZ] human gut metagenome; human gut
565
492
-
Gly
TCC
[ENA]
¢þ
>WENV183090417
OLJZ01003481
[OLJZ] human gut metagenome; human gut
572
497
-
Lys
TTT
[ENA]
¢þ
>WENV183090409
OLJZ01001242
[OLJZ] human gut metagenome; human gut
636
712
+
Pro
GGG
[ENA]
¢þ
>WENV183090412
OLJZ01001668
[OLJZ] human gut metagenome; human gut
665
739
+
Asn
GTT
[ENA]
¢þ
>WENV183090393
OLJZ01000410
[OLJZ] human gut metagenome; human gut
669
594
-
Ala
TGC
[ENA]
¢þ
>WENV183090391
OLJZ01000392
[OLJZ] human gut metagenome; human gut
683
759
+
Asp
GTC
[ENA]
¢þ
>WENV183090398
OLJZ01000621
[OLJZ] human gut metagenome; human gut
705
799
+
SeC
TCA
[ENA]
¢þ
>WENV183090401
OLJZ01000838
[OLJZ] human gut metagenome; human gut
724
649
-
Phe
GAA
[ENA]
¢þ
>WENV183090413
OLJZ01001668
[OLJZ] human gut metagenome; human gut
745
821
+
Arg
TCT
[ENA]
¢þ
>WENV183090399
OLJZ01000635
[OLJZ] human gut metagenome; human gut
786
700
-
Leu
CAG
[ENA]
¢þ
>WENV183090392
OLJZ01000410
[OLJZ] human gut metagenome; human gut
788
712
-
Ile
GAT
[ENA]
¢þ
>WENV183090408
OLJZ01001119
[OLJZ] human gut metagenome; human gut
800
725
-
Asn
GTT
[ENA]
¢þ
>WENV183090389
OLJZ01000268
[OLJZ] human gut metagenome; human gut
821
745
-
Pro
TGG
[ENA]
¢þ
>WENV183090388
OLJZ01000268
[OLJZ] human gut metagenome; human gut
950
864
-
Leu
CAG
[ENA]
¢þ
>WENV183090410
OLJZ01001392
[OLJZ] human gut metagenome; human gut
954
870
-
Leu
CAA
[ENA]
¢þ
>WENV183090390
OLJZ01000358
[OLJZ] human gut metagenome; human gut
1002
1077
+
Phe
GAA
[ENA]
¢þ
>WENV183090387
OLJZ01000268
[OLJZ] human gut metagenome; human gut
1049
974
-
His
GTG
[ENA]
¢þ
>WENV183090386
OLJZ01000268
[OLJZ] human gut metagenome; human gut
1180
1104
-
Arg
CCG
[ENA]
¢þ
>WENV183090400
OLJZ01000691
[OLJZ] human gut metagenome; human gut
1212
1128
-
Tyr
GTA
[ENA]
¢þ
>WENV183090380
OLJZ01000119
[OLJZ] human gut metagenome; human gut
1233
1320
+
Ser
GGA
[ENA]
¢þ
>WENV183090382
OLJZ01000181
[OLJZ] human gut metagenome; human gut
1234
1326
+
Ser
GCT
[ENA]
¢þ
>WENV183090383
OLJZ01000181
[OLJZ] human gut metagenome; human gut
1331
1407
+
Arg
ACG
[ENA]
¢þ
>WENV183090381
OLJZ01000142
[OLJZ] human gut metagenome; human gut
1603
1527
-
fMet
CAT
[ENA]
¢þ
>WENV183090379
OLJZ01000050
[OLJZ] human gut metagenome; human gut
2891
2967
+
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK