This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLKX] soil metagenome; soil
HIT:
35 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183092270
OLKX01000454
[OLKX] soil metagenome; soil
444
353
-
Ser
GGA
[ENA]
¢þ
>WENV183092243
OLKX01000210
[OLKX] soil metagenome; soil
638
565
-
Arg
TCT
[ENA]
¢þ
>WENV183092255
OLKX01000286
[OLKX] soil metagenome; soil
860
932
+
Thr
GGT
[ENA]
¢þ
>WENV183092253
OLKX01000251
[OLKX] soil metagenome; soil
924
853
-
Trp
CCA
[ENA]
¢þ
>WENV183092268
OLKX01000449
[OLKX] soil metagenome; soil
1028
1111
+
Leu
TAA
[ENA]
¢þ
>WENV183092260
OLKX01000362
[OLKX] soil metagenome; soil
1353
1423
+
Gly
TCC
[ENA]
¢þ
>WENV183092261
OLKX01000362
[OLKX] soil metagenome; soil
1434
1507
+
Pro
GGG
[ENA]
¢þ
>WENV183092237
OLKX01000165
[OLKX] soil metagenome; soil
1850
1920
+
Gln
TTG
[ENA]
¢þ
>WENV183092266
OLKX01000408
[OLKX] soil metagenome; soil
2298
2225
-
Lys
CTT
[ENA]
¢þ
>WENV183092242
OLKX01000201
[OLKX] soil metagenome; soil
3057
3129
+
Thr
TGT
[ENA]
¢þ
>WENV183092269
OLKX01000449
[OLKX] soil metagenome; soil
3845
3918
+
fMet
CAT
[ENA]
¢þ
>WENV183092240
OLKX01000196
[OLKX] soil metagenome; soil
4113
4039
-
Ala
GGC
[ENA]
¢þ
>WENV183092247
OLKX01000238
[OLKX] soil metagenome; soil
4879
4952
+
Pro
TGG
[ENA]
¢þ
>WENV183092241
OLKX01000198
[OLKX] soil metagenome; soil
4912
4986
+
His
GTG
[ENA]
¢þ
>WENV183092238
OLKX01000184
[OLKX] soil metagenome; soil
4991
5063
+
Arg
CCT
[ENA]
¢þ
>WENV183092256
OLKX01000286
[OLKX] soil metagenome; soil
5303
5221
-
Tyr
GTA
[ENA]
¢þ
>WENV183092245
OLKX01000224
[OLKX] soil metagenome; soil
6211
6138
-
Glu
CTC
[ENA]
¢þ
>WENV183092244
OLKX01000224
[OLKX] soil metagenome; soil
6355
6438
+
Leu
CAG
[ENA]
¢þ
>WENV183092265
OLKX01000406
[OLKX] soil metagenome; soil
6452
6527
+
Pro
CGG
[ENA]
¢þ
>WENV183092236
OLKX01000120
[OLKX] soil metagenome; soil
9717
9791
+
Asn
GTT
[ENA]
¢þ
>WENV183092259
OLKX01000341
[OLKX] soil metagenome; soil
11255
11327
+
Phe
GAA
[ENA]
¢þ
>WENV183092264
OLKX01000381
[OLKX] soil metagenome; soil
11368
11292
-
Asp
GTC
[ENA]
¢þ
>WENV183092250
OLKX01000247
[OLKX] soil metagenome; soil
11945
11873
-
Gly
CCC
[ENA]
¢þ
>WENV183092248
OLKX01000244
[OLKX] soil metagenome; soil
12343
12436
+
Ser
TGA
[ENA]
¢þ
>WENV183092239
OLKX01000186
[OLKX] soil metagenome; soil
13700
13628
-
Thr
CGT
[ENA]
¢þ
>WENV183092249
OLKX01000244
[OLKX] soil metagenome; soil
14048
14136
+
Ser
GCT
[ENA]
¢þ
>WENV183092262
OLKX01000381
[OLKX] soil metagenome; soil
14341
14414
+
Val
TAC
[ENA]
¢þ
>WENV183092263
OLKX01000381
[OLKX] soil metagenome; soil
15951
16023
+
Lys
TTT
[ENA]
¢þ
>WENV183092246
OLKX01000229
[OLKX] soil metagenome; soil
16902
16829
-
Ile
GAT
[ENA]
¢þ
>WENV183092254
OLKX01000262
[OLKX] soil metagenome; soil
17110
17198
+
Leu
GAG
[ENA]
¢þ
>WENV183092252
OLKX01000251
[OLKX] soil metagenome; soil
20661
20575
-
Leu
TAG
[ENA]
¢þ
>WENV183092251
OLKX01000251
[OLKX] soil metagenome; soil
21379
21464
+
Leu
CAA
[ENA]
¢þ
>WENV183092267
OLKX01000416
[OLKX] soil metagenome; soil
26355
26284
-
Val
CAC
[ENA]
¢þ
>WENV183092258
OLKX01000296
[OLKX] soil metagenome; soil
37422
37349
-
Gly
GCC
[ENA]
¢þ
>WENV183092257
OLKX01000296
[OLKX] soil metagenome; soil
63102
63031
-
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK