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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLKZ] soil metagenome; soil
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183092334
OLKZ01000184
[OLKZ] soil metagenome; soil
64
138
+
Arg
TCT
[ENA]
¢þ
>WENV183092349
OLKZ01000224
[OLKZ] soil metagenome; soil
75
1
-
Ile2
CAT
[ENA]
¢þ
>WENV183092344
OLKZ01000217
[OLKZ] soil metagenome; soil
166
93
-
Gly
GCC
[ENA]
¢þ
>WENV183092342
OLKZ01000210
[OLKZ] soil metagenome; soil
1157
1072
-
Ser
TGA
[ENA]
¢þ
>WENV183092320
OLKZ01000113
[OLKZ] soil metagenome; soil
1577
1649
+
Met
CAT
[ENA]
¢þ
>WENV183092323
OLKZ01000139
[OLKZ] soil metagenome; soil
1848
1920
+
Glu
TTC
[ENA]
¢þ
>WENV183092343
OLKZ01000217
[OLKZ] soil metagenome; soil
3073
3157
+
Leu
GAG
[ENA]
¢þ
>WENV183092318
OLKZ01000064
[OLKZ] soil metagenome; soil
3171
3097
-
Met
CAT
[ENA]
¢þ
>WENV183092350
OLKZ01000233
[OLKZ] soil metagenome; soil
4344
4270
-
Asn
GTT
[ENA]
¢þ
>WENV183092336
OLKZ01000193
[OLKZ] soil metagenome; soil
5123
5037
-
Leu
GAG
[ENA]
¢þ
>WENV183092340
OLKZ01000204
[OLKZ] soil metagenome; soil
7359
7273
-
Leu
CAG
[ENA]
¢þ
>WENV183092338
OLKZ01000197
[OLKZ] soil metagenome; soil
8340
8267
-
Cys
GCA
[ENA]
¢þ
>WENV183092351
OLKZ01000242
[OLKZ] soil metagenome; soil
10254
10326
+
Arg
CCG
[ENA]
¢þ
>WENV183092317
OLKZ01000034
[OLKZ] soil metagenome; soil
13310
13383
+
Lys
CTT
[ENA]
¢þ
>WENV183092347
OLKZ01000222
[OLKZ] soil metagenome; soil
14050
13976
-
His
GTG
[ENA]
¢þ
>WENV183092345
OLKZ01000221
[OLKZ] soil metagenome; soil
14262
14336
+
Asp
GTC
[ENA]
¢þ
>WENV183092337
OLKZ01000194
[OLKZ] soil metagenome; soil
14893
14965
+
Arg
CCT
[ENA]
¢þ
>WENV183092341
OLKZ01000208
[OLKZ] soil metagenome; soil
16771
16844
+
Thr
CGT
[ENA]
¢þ
>WENV183092322
OLKZ01000136
[OLKZ] soil metagenome; soil
20646
20719
+
Gly
CCC
[ENA]
¢þ
>WENV183092324
OLKZ01000159
[OLKZ] soil metagenome; soil
23750
23676
-
Pro
CGG
[ENA]
¢þ
>WENV183092315
OLKZ01000023
[OLKZ] soil metagenome; soil
25839
25926
+
Ser
GGA
[ENA]
¢þ
>WENV183092335
OLKZ01000185
[OLKZ] soil metagenome; soil
29911
29838
-
Lys
TTT
[ENA]
¢þ
>WENV183092325
OLKZ01000163
[OLKZ] soil metagenome; soil
36495
36421
-
Pro
GGG
[ENA]
¢þ
>WENV183092321
OLKZ01000125
[OLKZ] soil metagenome; soil
43920
43845
-
Pro
TGG
[ENA]
¢þ
>WENV183092346
OLKZ01000222
[OLKZ] soil metagenome; soil
45569
45653
+
Leu
CAA
[ENA]
¢þ
>WENV183092333
OLKZ01000181
[OLKZ] soil metagenome; soil
45717
45646
-
Gln
CTG
[ENA]
¢þ
>WENV183092332
OLKZ01000172
[OLKZ] soil metagenome; soil
45945
45861
-
Leu
TAG
[ENA]
¢þ
>WENV183092352
OLKZ01000242
[OLKZ] soil metagenome; soil
59783
59858
+
Thr
GGT
[ENA]
¢þ
>WENV183092339
OLKZ01000204
[OLKZ] soil metagenome; soil
80817
80745
-
fMet
CAT
[ENA]
¢þ
>WENV183092348
OLKZ01000224
[OLKZ] soil metagenome; soil
122124
122051
-
Phe
GAA
[ENA]
¢þ
>WENV183092319
OLKZ01000109
[OLKZ] soil metagenome; soil
129273
129198
-
Val
TAC
[ENA]
¢þ
>WENV183092331
OLKZ01000169
[OLKZ] soil metagenome; soil
156051
155980
-
Gln
TTG
[ENA]
¢þ
>WENV183092326
OLKZ01000169
[OLKZ] soil metagenome; soil
181592
181665
+
Thr
TGT
[ENA]
¢þ
>WENV183092327
OLKZ01000169
[OLKZ] soil metagenome; soil
181672
181755
+
Tyr
GTA
[ENA]
¢þ
>WENV183092328
OLKZ01000169
[OLKZ] soil metagenome; soil
181858
181931
+
Gly
TCC
[ENA]
¢þ
>WENV183092329
OLKZ01000169
[OLKZ] soil metagenome; soil
182094
182166
+
Thr
GGT
[ENA]
¢þ
>WENV183092330
OLKZ01000169
[OLKZ] soil metagenome; soil
183660
183731
+
Trp
CCA
[ENA]
¢þ
>WENV183092316
OLKZ01000023
[OLKZ] soil metagenome; soil
223251
223325
+
Ala
GGC
[ENA]
¢þ
>WENV183092314
OLKZ01000020
[OLKZ] soil metagenome; soil
285817
285906
+
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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