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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLLC] soil metagenome; soil
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183092395
OLLC01000188
[OLLC] soil metagenome; soil
9
81
+
Gln
CTG
[ENA]
¢þ
>WENV183092386
OLLC01000129
[OLLC] soil metagenome; soil
76
1
-
Gly
GCC
[ENA]
¢þ
>WENV183092411
OLLC01000236
[OLLC] soil metagenome; soil
79
1
-
Pro
GGG
[ENA]
¢þ
>WENV183092381
OLLC01000115
[OLLC] soil metagenome; soil
80
8
-
Arg
CCT
[ENA]
¢þ
>WENV183092396
OLLC01000188
[OLLC] soil metagenome; soil
114
189
+
Glu
CTC
[ENA]
¢þ
>WENV183092416
OLLC01000293
[OLLC] soil metagenome; soil
167
93
-
Arg
ACG
[ENA]
¢þ
>WENV183092414
OLLC01000288
[OLLC] soil metagenome; soil
169
94
-
Thr
CGT
[ENA]
¢þ
>WENV183092407
OLLC01000220
[OLLC] soil metagenome; soil
835
909
+
fMet
CAT
[ENA]
¢þ
>WENV183092387
OLLC01000139
[OLLC] soil metagenome; soil
1185
1258
+
Cys
GCA
[ENA]
¢þ
>WENV183092393
OLLC01000180
[OLLC] soil metagenome; soil
1236
1161
-
Glu
TTC
[ENA]
¢þ
>WENV183092378
OLLC01000040
[OLLC] soil metagenome; soil
1251
1326
+
Gln
TTG
[ENA]
¢þ
>WENV183092380
OLLC01000093
[OLLC] soil metagenome; soil
1269
1176
-
Ser
GCT
[ENA]
¢þ
>WENV183092392
OLLC01000180
[OLLC] soil metagenome; soil
1343
1267
-
Pro
CGG
[ENA]
¢þ
>WENV183092390
OLLC01000163
[OLLC] soil metagenome; soil
1830
1916
+
Leu
GAG
[ENA]
¢þ
>WENV183092408
OLLC01000222
[OLLC] soil metagenome; soil
1868
1794
-
Thr
TGT
[ENA]
¢þ
>WENV183092383
OLLC01000122
[OLLC] soil metagenome; soil
1954
1881
-
Trp
CCA
[ENA]
¢þ
>WENV183092388
OLLC01000146
[OLLC] soil metagenome; soil
2102
2186
+
Tyr
GTA
[ENA]
¢þ
>WENV183092404
OLLC01000208
[OLLC] soil metagenome; soil
2284
2209
-
Lys
CTT
[ENA]
¢þ
>WENV183092399
OLLC01000193
[OLLC] soil metagenome; soil
3546
3621
+
Ala
CGC
[ENA]
¢þ
>WENV183092403
OLLC01000208
[OLLC] soil metagenome; soil
3942
3866
-
His
GTG
[ENA]
¢þ
>WENV183092409
OLLC01000223
[OLLC] soil metagenome; soil
4618
4691
+
Trp
CCA
[ENA]
¢þ
>WENV183092384
OLLC01000123
[OLLC] soil metagenome; soil
5404
5491
+
Ser
TGA
[ENA]
¢þ
>WENV183092413
OLLC01000287
[OLLC] soil metagenome; soil
5473
5546
+
Ala
GGC
[ENA]
¢þ
>WENV183092389
OLLC01000161
[OLLC] soil metagenome; soil
5745
5819
+
Leu
TAA
[ENA]
¢þ
>WENV183092391
OLLC01000177
[OLLC] soil metagenome; soil
5821
5905
+
Leu
CAA
[ENA]
¢þ
>WENV183092410
OLLC01000234
[OLLC] soil metagenome; soil
6028
6114
+
Leu
CAG
[ENA]
¢þ
>WENV183092394
OLLC01000185
[OLLC] soil metagenome; soil
7586
7658
+
Arg
CCG
[ENA]
¢þ
>WENV183092406
OLLC01000210
[OLLC] soil metagenome; soil
7910
7823
-
Ser
CGA
[ENA]
¢þ
>WENV183092379
OLLC01000056
[OLLC] soil metagenome; soil
8374
8450
+
Val
TAC
[ENA]
¢þ
>WENV183092385
OLLC01000129
[OLLC] soil metagenome; soil
8645
8725
+
Leu
TAG
[ENA]
¢þ
>WENV183092405
OLLC01000210
[OLLC] soil metagenome; soil
9528
9441
-
Ser
GGA
[ENA]
¢þ
>WENV183092401
OLLC01000203
[OLLC] soil metagenome; soil
10197
10122
-
Ile2
CAT
[ENA]
¢þ
>WENV183092400
OLLC01000203
[OLLC] soil metagenome; soil
10388
10315
-
Asn
GTT
[ENA]
¢þ
>WENV183092412
OLLC01000276
[OLLC] soil metagenome; soil
10713
10638
-
Gln
TTG
[ENA]
¢þ
>WENV183092382
OLLC01000121
[OLLC] soil metagenome; soil
16466
16388
-
Pro
GGG
[ENA]
¢þ
>WENV183092397
OLLC01000190
[OLLC] soil metagenome; soil
17913
17985
+
Gln
CTG
[ENA]
¢þ
>WENV183092398
OLLC01000190
[OLLC] soil metagenome; soil
18024
18097
+
Glu
CTC
[ENA]
¢þ
>WENV183092402
OLLC01000206
[OLLC] soil metagenome; soil
25648
25722
+
Val
CAC
[ENA]
¢þ
>WENV183092415
OLLC01000293
[OLLC] soil metagenome; soil
27879
27805
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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