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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLLI] soil metagenome; soil
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183092658
OLLI01000762
[OLLI] soil metagenome; soil
4
80
+
Ile
GAT
[ENA]
¢þ
>WENV183092665
OLLI01000922
[OLLI] soil metagenome; soil
11
86
+
Ala
TGC
[ENA]
¢þ
>WENV183092689
OLLI01001684
[OLLI] soil metagenome; soil
81
5
-
Ile
GAT
[ENA]
¢þ
>WENV183092659
OLLI01000762
[OLLI] soil metagenome; soil
101
176
+
Ala
TGC
[ENA]
¢þ
>WENV183092679
OLLI01001296
[OLLI] soil metagenome; soil
108
34
-
Pro
GGG
[ENA]
¢þ
>WENV183092684
OLLI01001487
[OLLI] soil metagenome; soil
110
36
-
Pro
CGG
[ENA]
¢þ
>WENV183092668
OLLI01001018
[OLLI] soil metagenome; soil
122
46
-
fMet
CAT
[ENA]
¢þ
>WENV183092662
OLLI01000806
[OLLI] soil metagenome; soil
143
59
-
Leu
GAG
[ENA]
¢þ
>WENV183092656
OLLI01000642
[OLLI] soil metagenome; soil
242
153
-
Ser
CGA
[ENA]
¢þ
>WENV183092681
OLLI01001345
[OLLI] soil metagenome; soil
335
261
-
Met
CAT
[ENA]
¢þ
>WENV183092680
OLLI01001345
[OLLI] soil metagenome; soil
474
401
-
Thr
GGT
[ENA]
¢þ
>WENV183092655
OLLI01000581
[OLLI] soil metagenome; soil
498
424
-
Ala
CGC
[ENA]
¢þ
>WENV183092654
OLLI01000568
[OLLI] soil metagenome; soil
580
653
+
Val
TAC
[ENA]
¢þ
>WENV183092667
OLLI01001016
[OLLI] soil metagenome; soil
981
1054
+
Ile2
CAT
[ENA]
¢þ
>WENV183092666
OLLI01000955
[OLLI] soil metagenome; soil
1077
1152
+
Ala
GGC
[ENA]
¢þ
>WENV183092683
OLLI01001415
[OLLI] soil metagenome; soil
1096
1171
+
Arg
CCT
[ENA]
¢þ
>WENV183092675
OLLI01001170
[OLLI] soil metagenome; soil
1103
1016
-
Ser
GGA
[ENA]
¢þ
>WENV183092646
OLLI01000436
[OLLI] soil metagenome; soil
1161
1244
+
Tyr
GTA
[ENA]
¢þ
>WENV183092690
OLLI01001688
[OLLI] soil metagenome; soil
1164
1092
-
Thr
TGT
[ENA]
¢þ
>WENV183092677
OLLI01001233
[OLLI] soil metagenome; soil
1294
1220
-
Ala
GGC
[ENA]
¢þ
>WENV183092685
OLLI01001524
[OLLI] soil metagenome; soil
1467
1391
-
Thr
CGT
[ENA]
¢þ
>WENV183092686
OLLI01001533
[OLLI] soil metagenome; soil
2159
2086
-
Gly
CCC
[ENA]
¢þ
>WENV183092676
OLLI01001193
[OLLI] soil metagenome; soil
2247
2164
-
Leu
CAG
[ENA]
¢þ
>WENV183092663
OLLI01000855
[OLLI] soil metagenome; soil
2418
2345
-
Gly
GCC
[ENA]
¢þ
>WENV183092649
OLLI01000443
[OLLI] soil metagenome; soil
2511
2584
+
Lys
CTT
[ENA]
¢þ
>WENV183092664
OLLI01000873
[OLLI] soil metagenome; soil
3023
3097
+
Arg
CCG
[ENA]
¢þ
>WENV183092688
OLLI01001682
[OLLI] soil metagenome; soil
3089
3002
-
Ser
TGA
[ENA]
¢þ
>WENV183092657
OLLI01000697
[OLLI] soil metagenome; soil
3583
3656
+
Arg
ACG
[ENA]
¢þ
>WENV183092660
OLLI01000780
[OLLI] soil metagenome; soil
3716
3792
+
Arg
TCT
[ENA]
¢þ
>WENV183092648
OLLI01000441
[OLLI] soil metagenome; soil
3995
3922
-
Glu
CTC
[ENA]
¢þ
>WENV183092647
OLLI01000441
[OLLI] soil metagenome; soil
4177
4105
-
Gln
CTG
[ENA]
¢þ
>WENV183092653
OLLI01000518
[OLLI] soil metagenome; soil
4190
4270
+
Gln
TTG
[ENA]
¢þ
>WENV183092682
OLLI01001407
[OLLI] soil metagenome; soil
4298
4221
-
Leu
TAG
[ENA]
¢þ
>WENV183092651
OLLI01000495
[OLLI] soil metagenome; soil
4584
4657
+
Gly
GCC
[ENA]
¢þ
>WENV183092661
OLLI01000780
[OLLI] soil metagenome; soil
4610
4685
+
His
GTG
[ENA]
¢þ
>WENV183092674
OLLI01001135
[OLLI] soil metagenome; soil
4689
4762
+
Trp
CCA
[ENA]
¢þ
>WENV183092652
OLLI01000495
[OLLI] soil metagenome; soil
4717
4788
+
Cys
GCA
[ENA]
¢þ
>WENV183092650
OLLI01000477
[OLLI] soil metagenome; soil
4891
4817
-
Val
CAC
[ENA]
¢þ
>WENV183092678
OLLI01001272
[OLLI] soil metagenome; soil
5015
5090
+
Leu
TAA
[ENA]
¢þ
>WENV183092669
OLLI01001024
[OLLI] soil metagenome; soil
5678
5751
+
Glu
TTC
[ENA]
¢þ
>WENV183092670
OLLI01001024
[OLLI] soil metagenome; soil
5771
5845
+
Asp
GTC
[ENA]
¢þ
>WENV183092671
OLLI01001024
[OLLI] soil metagenome; soil
5879
5955
+
Phe
GAA
[ENA]
¢þ
>WENV183092687
OLLI01001656
[OLLI] soil metagenome; soil
5897
5985
+
Ser
GCT
[ENA]
¢þ
>WENV183092691
OLLI01001731
[OLLI] soil metagenome; soil
7832
7905
+
Asn
GTT
[ENA]
¢þ
>WENV183092645
OLLI01000318
[OLLI] soil metagenome; soil
9906
9989
+
Leu
CAA
[ENA]
¢þ
>WENV183092673
OLLI01001095
[OLLI] soil metagenome; soil
15727
15653
-
Pro
TGG
[ENA]
¢þ
>WENV183092672
OLLI01001095
[OLLI] soil metagenome; soil
15862
15935
+
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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