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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLLK] soil metagenome; soil
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183092747
OLLK01000166
[OLLK] soil metagenome; soil
17
88
+
Cys
GCA
[ENA]
¢þ
>WENV183092758
OLLK01000218
[OLLK] soil metagenome; soil
87
3
-
Leu
CAG
[ENA]
¢þ
>WENV183092745
OLLK01000157
[OLLK] soil metagenome; soil
87
15
-
Glu
TTC
[ENA]
¢þ
>WENV183092755
OLLK01000190
[OLLK] soil metagenome; soil
92
4
-
Ser
GCT
[ENA]
¢þ
>WENV183092744
OLLK01000142
[OLLK] soil metagenome; soil
192
264
+
Thr
GGT
[ENA]
¢þ
>WENV183092752
OLLK01000184
[OLLK] soil metagenome; soil
1040
968
-
Thr
GGT
[ENA]
¢þ
>WENV183092751
OLLK01000184
[OLLK] soil metagenome; soil
1191
1118
-
Gly
TCC
[ENA]
¢þ
>WENV183092766
OLLK01000266
[OLLK] soil metagenome; soil
4240
4327
+
Ser
TGA
[ENA]
¢þ
>WENV183092768
OLLK01000285
[OLLK] soil metagenome; soil
4568
4641
+
Gly
GCC
[ENA]
¢þ
>WENV183092769
OLLK01000285
[OLLK] soil metagenome; soil
4691
4776
+
Leu
TAA
[ENA]
¢þ
>WENV183092746
OLLK01000163
[OLLK] soil metagenome; soil
8301
8374
+
Gly
CCC
[ENA]
¢þ
>WENV183092741
OLLK01000090
[OLLK] soil metagenome; soil
12636
12561
-
Val
TAC
[ENA]
¢þ
>WENV183092772
OLLK01000302
[OLLK] soil metagenome; soil
15738
15809
+
Cys
GCA
[ENA]
¢þ
>WENV183092765
OLLK01000259
[OLLK] soil metagenome; soil
15931
16004
+
Gln
CTG
[ENA]
¢þ
>WENV183092774
OLLK01000306
[OLLK] soil metagenome; soil
16711
16638
-
fMet
CAT
[ENA]
¢þ
>WENV183092753
OLLK01000186
[OLLK] soil metagenome; soil
18388
18304
-
Leu
CAA
[ENA]
¢þ
>WENV183092760
OLLK01000240
[OLLK] soil metagenome; soil
19096
19169
+
Lys
CTT
[ENA]
¢þ
>WENV183092742
OLLK01000120
[OLLK] soil metagenome; soil
20717
20788
+
Gln
TTG
[ENA]
¢þ
>WENV183092757
OLLK01000200
[OLLK] soil metagenome; soil
22740
22813
+
Phe
GAA
[ENA]
¢þ
>WENV183092754
OLLK01000190
[OLLK] soil metagenome; soil
27791
27865
+
Pro
TGG
[ENA]
¢þ
>WENV183092775
OLLK01000310
[OLLK] soil metagenome; soil
28117
28035
-
Leu
TAG
[ENA]
¢þ
>WENV183092750
OLLK01000175
[OLLK] soil metagenome; soil
30860
30786
-
Ala
GGC
[ENA]
¢þ
>WENV183092749
OLLK01000175
[OLLK] soil metagenome; soil
35510
35422
-
Ser
GGA
[ENA]
¢þ
>WENV183092767
OLLK01000283
[OLLK] soil metagenome; soil
36887
36961
+
Pro
GGG
[ENA]
¢þ
>WENV183092743
OLLK01000125
[OLLK] soil metagenome; soil
42319
42393
+
Met
CAT
[ENA]
¢þ
>WENV183092773
OLLK01000302
[OLLK] soil metagenome; soil
45243
45315
+
Arg
CCG
[ENA]
¢þ
>WENV183092763
OLLK01000240
[OLLK] soil metagenome; soil
51937
51856
-
Tyr
GTA
[ENA]
¢þ
>WENV183092762
OLLK01000240
[OLLK] soil metagenome; soil
52031
51945
-
Ser
GCT
[ENA]
¢þ
>WENV183092761
OLLK01000240
[OLLK] soil metagenome; soil
52109
52036
-
Asn
GTT
[ENA]
¢þ
>WENV183092739
OLLK01000058
[OLLK] soil metagenome; soil
54853
54779
-
Arg
TCT
[ENA]
¢þ
>WENV183092771
OLLK01000290
[OLLK] soil metagenome; soil
55745
55672
-
Lys
TTT
[ENA]
¢þ
>WENV183092770
OLLK01000290
[OLLK] soil metagenome; soil
57025
56941
-
Leu
GAG
[ENA]
¢þ
>WENV183092759
OLLK01000229
[OLLK] soil metagenome; soil
69201
69127
-
Arg
ACG
[ENA]
¢þ
>WENV183092740
OLLK01000082
[OLLK] soil metagenome; soil
105847
105921
+
His
GTG
[ENA]
¢þ
>WENV183092764
OLLK01000250
[OLLK] soil metagenome; soil
115368
115294
-
Asp
GTC
[ENA]
¢þ
>WENV183092748
OLLK01000175
[OLLK] soil metagenome; soil
129024
129096
+
Arg
CCT
[ENA]
¢þ
>WENV183092735
OLLK01000026
[OLLK] soil metagenome; soil
154940
155014
+
Asn
GTT
[ENA]
¢þ
>WENV183092736
OLLK01000026
[OLLK] soil metagenome; soil
208585
208660
+
Pro
TGG
[ENA]
¢þ
>WENV183092737
OLLK01000026
[OLLK] soil metagenome; soil
208668
208742
+
Ile
TAT
[ENA]
¢þ
>WENV183092738
OLLK01000026
[OLLK] soil metagenome; soil
208922
208993
+
Gln
TTG
[ENA]
¢þ
>WENV183092756
OLLK01000198
[OLLK] soil metagenome; soil
252082
252156
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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