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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLLN] soil metagenome; soil
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183092865
OLLN01000058
[OLLN] soil metagenome; soil
66
140
+
Val
TAC
[ENA]
¢þ
>WENV183092880
OLLN01000236
[OLLN] soil metagenome; soil
267
192
-
Phe
GAA
[ENA]
¢þ
>WENV183092874
OLLN01000214
[OLLN] soil metagenome; soil
376
450
+
Val
GAC
[ENA]
¢þ
>WENV183092891
OLLN01000396
[OLLN] soil metagenome; soil
657
732
+
Thr
TGT
[ENA]
¢þ
>WENV183092904
OLLN01000429
[OLLN] soil metagenome; soil
721
647
-
Gln
TTG
[ENA]
¢þ
>WENV183092892
OLLN01000396
[OLLN] soil metagenome; soil
749
835
+
Tyr
GTA
[ENA]
¢þ
>WENV183092893
OLLN01000396
[OLLN] soil metagenome; soil
856
931
+
Gly
TCC
[ENA]
¢þ
>WENV183092870
OLLN01000130
[OLLN] soil metagenome; soil
886
972
+
Leu
CAG
[ENA]
¢þ
>WENV183092894
OLLN01000396
[OLLN] soil metagenome; soil
1011
1085
+
Thr
GGT
[ENA]
¢þ
>WENV183092895
OLLN01000396
[OLLN] soil metagenome; soil
1390
1465
+
Trp
CCA
[ENA]
¢þ
>WENV183092860
OLLN01000022
[OLLN] soil metagenome; soil
1417
1506
+
Ser
TGA
[ENA]
¢þ
>WENV183092898
OLLN01000411
[OLLN] soil metagenome; soil
1462
1536
+
Ile2
CAT
[ENA]
¢þ
>WENV183092869
OLLN01000086
[OLLN] soil metagenome; soil
1482
1407
-
Gly
GCC
[ENA]
¢þ
>WENV183092866
OLLN01000058
[OLLN] soil metagenome; soil
2310
2386
+
His
GTG
[ENA]
¢þ
>WENV183092905
OLLN01000438
[OLLN] soil metagenome; soil
2708
2784
+
Asp
GTC
[ENA]
¢þ
>WENV183092887
OLLN01000382
[OLLN] soil metagenome; soil
3324
3248
-
fMet
CAT
[ENA]
¢þ
>WENV183092882
OLLN01000326
[OLLN] soil metagenome; soil
3883
3959
+
Arg
CCG
[ENA]
¢þ
>WENV183092878
OLLN01000222
[OLLN] soil metagenome; soil
3919
3844
-
Gly
GCC
[ENA]
¢þ
>WENV183092906
OLLN01000441
[OLLN] soil metagenome; soil
4019
3944
-
Phe
GAA
[ENA]
¢þ
>WENV183092868
OLLN01000071
[OLLN] soil metagenome; soil
4319
4394
+
Thr
CGT
[ENA]
¢þ
>WENV183092872
OLLN01000158
[OLLN] soil metagenome; soil
4903
4977
+
Val
TAC
[ENA]
¢þ
>WENV183092886
OLLN01000376
[OLLN] soil metagenome; soil
5483
5559
+
Arg
CCT
[ENA]
¢þ
>WENV183092890
OLLN01000387
[OLLN] soil metagenome; soil
5700
5625
-
Glu
TTC
[ENA]
¢þ
>WENV183092889
OLLN01000387
[OLLN] soil metagenome; soil
5792
5717
-
Lys
TTT
[ENA]
¢þ
>WENV183092884
OLLN01000359
[OLLN] soil metagenome; soil
6466
6542
+
Val
GAC
[ENA]
¢þ
>WENV183092877
OLLN01000215
[OLLN] soil metagenome; soil
6554
6465
-
Ser
GGA
[ENA]
¢þ
>WENV183092876
OLLN01000215
[OLLN] soil metagenome; soil
6738
6649
-
Ser
CGA
[ENA]
¢þ
>WENV183092875
OLLN01000215
[OLLN] soil metagenome; soil
7365
7289
-
Arg
ACG
[ENA]
¢þ
>WENV183092862
OLLN01000041
[OLLN] soil metagenome; soil
9075
9161
+
Leu
CAA
[ENA]
¢þ
>WENV183092861
OLLN01000024
[OLLN] soil metagenome; soil
9306
9230
-
Met
CAT
[ENA]
¢þ
>WENV183092883
OLLN01000346
[OLLN] soil metagenome; soil
11507
11583
+
Arg
TCG
[ENA]
¢þ
>WENV183092896
OLLN01000398
[OLLN] soil metagenome; soil
12787
12690
-
SeC
TCA
[ENA]
¢þ
>WENV183092907
OLLN01000452
[OLLN] soil metagenome; soil
14813
14738
-
Gly
CCC
[ENA]
¢þ
>WENV183092871
OLLN01000132
[OLLN] soil metagenome; soil
14964
15048
+
Leu
GAG
[ENA]
¢þ
>WENV183092858
OLLN01000016
[OLLN] soil metagenome; soil
17016
17092
+
Pro
TGG
[ENA]
¢þ
>WENV183092859
OLLN01000016
[OLLN] soil metagenome; soil
17110
17186
+
Arg
TCT
[ENA]
¢þ
>WENV183092903
OLLN01000414
[OLLN] soil metagenome; soil
17484
17409
-
Asn
GTT
[ENA]
¢þ
>WENV183092900
OLLN01000414
[OLLN] soil metagenome; soil
17613
17687
+
Cys
GCA
[ENA]
¢þ
>WENV183092867
OLLN01000064
[OLLN] soil metagenome; soil
18413
18488
+
Ala
GGC
[ENA]
¢þ
>WENV183092879
OLLN01000223
[OLLN] soil metagenome; soil
18483
18556
+
Gln
CTG
[ENA]
¢þ
>WENV183092873
OLLN01000209
[OLLN] soil metagenome; soil
22816
22739
-
Pro
CGG
[ENA]
¢þ
>WENV183092864
OLLN01000055
[OLLN] soil metagenome; soil
29376
29288
-
Leu
TAA
[ENA]
¢þ
>WENV183092863
OLLN01000041
[OLLN] soil metagenome; soil
33735
33810
+
Glu
CTC
[ENA]
¢þ
>WENV183092888
OLLN01000383
[OLLN] soil metagenome; soil
44625
44550
-
Ile2
CAT
[ENA]
¢þ
>WENV183092897
OLLN01000399
[OLLN] soil metagenome; soil
49016
49092
+
Pro
GGG
[ENA]
¢þ
>WENV183092899
OLLN01000413
[OLLN] soil metagenome; soil
57031
56957
-
Ser
GCT
[ENA]
¢þ
>WENV183092881
OLLN01000302
[OLLN] soil metagenome; soil
72601
72526
-
Asn
GTT
[ENA]
¢þ
>WENV183092885
OLLN01000363
[OLLN] soil metagenome; soil
79412
79487
+
Val
CAC
[ENA]
¢þ
>WENV183092901
OLLN01000414
[OLLN] soil metagenome; soil
79703
79778
+
Lys
CTT
[ENA]
¢þ
>WENV183092902
OLLN01000414
[OLLN] soil metagenome; soil
79833
79918
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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