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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLLO] soil metagenome; soil
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183092908
OLLO01000020
[OLLO] soil metagenome; soil
16
90
+
Asn
GTT
[ENA]
¢þ
>WENV183092956
OLLO01000845
[OLLO] soil metagenome; soil
17
92
+
His
GTG
[ENA]
¢þ
>WENV183092919
OLLO01000314
[OLLO] soil metagenome; soil
42
116
+
Ile2
CAT
[ENA]
¢þ
>WENV183092926
OLLO01000351
[OLLO] soil metagenome; soil
53
125
+
Thr
GGT
[ENA]
¢þ
>WENV183092923
OLLO01000347
[OLLO] soil metagenome; soil
86
14
-
Gly
CCC
[ENA]
¢þ
>WENV183092944
OLLO01000721
[OLLO] soil metagenome; soil
119
192
+
Gly
GCC
[ENA]
¢þ
>WENV183092932
OLLO01000381
[OLLO] soil metagenome; soil
174
99
-
Met
CAT
[ENA]
¢þ
>WENV183092939
OLLO01000595
[OLLO] soil metagenome; soil
227
303
+
fMet
CAT
[ENA]
¢þ
>WENV183092945
OLLO01000721
[OLLO] soil metagenome; soil
244
330
+
Leu
TAA
[ENA]
¢þ
>WENV183092940
OLLO01000630
[OLLO] soil metagenome; soil
261
335
+
Ala
GGC
[ENA]
¢þ
>WENV183092918
OLLO01000292
[OLLO] soil metagenome; soil
271
197
-
Gln
TTG
[ENA]
¢þ
>WENV183092936
OLLO01000494
[OLLO] soil metagenome; soil
357
271
-
Leu
CAA
[ENA]
¢þ
>WENV183092912
OLLO01000116
[OLLO] soil metagenome; soil
416
344
-
Arg
CCG
[ENA]
¢þ
>WENV183092931
OLLO01000381
[OLLO] soil metagenome; soil
419
344
-
Thr
GGT
[ENA]
¢þ
>WENV183092934
OLLO01000441
[OLLO] soil metagenome; soil
478
405
-
Lys
TTT
[ENA]
¢þ
>WENV183092935
OLLO01000494
[OLLO] soil metagenome; soil
537
612
+
Ala
GGC
[ENA]
¢þ
>WENV183092930
OLLO01000381
[OLLO] soil metagenome; soil
608
523
-
Tyr
GTA
[ENA]
¢þ
>WENV183092929
OLLO01000381
[OLLO] soil metagenome; soil
709
634
-
Thr
TGT
[ENA]
¢þ
>WENV183092957
OLLO01000846
[OLLO] soil metagenome; soil
756
828
+
Thr
CGT
[ENA]
¢þ
>WENV183092947
OLLO01000732
[OLLO] soil metagenome; soil
880
952
+
Arg
CCT
[ENA]
¢þ
>WENV183092933
OLLO01000388
[OLLO] soil metagenome; soil
1042
1116
+
Arg
TCT
[ENA]
¢þ
>WENV183092921
OLLO01000335
[OLLO] soil metagenome; soil
1375
1301
-
Arg
CCT
[ENA]
¢þ
>WENV183092922
OLLO01000347
[OLLO] soil metagenome; soil
1397
1324
-
Thr
CGT
[ENA]
¢þ
>WENV183092946
OLLO01000727
[OLLO] soil metagenome; soil
1399
1475
+
Met
CAT
[ENA]
¢þ
>WENV183092913
OLLO01000158
[OLLO] soil metagenome; soil
1530
1456
-
Pro
GGG
[ENA]
¢þ
>WENV183092909
OLLO01000090
[OLLO] soil metagenome; soil
1542
1617
+
Val
GAC
[ENA]
¢þ
>WENV183092927
OLLO01000351
[OLLO] soil metagenome; soil
1569
1643
+
Trp
CCA
[ENA]
¢þ
>WENV183092910
OLLO01000109
[OLLO] soil metagenome; soil
1584
1657
+
Thr
CGT
[ENA]
¢þ
>WENV183092955
OLLO01000832
[OLLO] soil metagenome; soil
1652
1724
+
Glu
TTC
[ENA]
¢þ
>WENV183092938
OLLO01000581
[OLLO] soil metagenome; soil
2248
2176
-
fMet
CAT
[ENA]
¢þ
>WENV183092917
OLLO01000282
[OLLO] soil metagenome; soil
2369
2282
-
Ser
GGA
[ENA]
¢þ
>WENV183092948
OLLO01000742
[OLLO] soil metagenome; soil
2709
2793
+
Leu
GAG
[ENA]
¢þ
>WENV183092941
OLLO01000641
[OLLO] soil metagenome; soil
2730
2656
-
Met
CAT
[ENA]
¢þ
>WENV183092920
OLLO01000318
[OLLO] soil metagenome; soil
2824
2898
+
Asn
GTT
[ENA]
¢þ
>WENV183092914
OLLO01000195
[OLLO] soil metagenome; soil
2930
2859
-
Gln
CTG
[ENA]
¢þ
>WENV183092937
OLLO01000515
[OLLO] soil metagenome; soil
3030
2956
-
Arg
TCT
[ENA]
¢þ
>WENV183092943
OLLO01000694
[OLLO] soil metagenome; soil
3202
3128
-
His
GTG
[ENA]
¢þ
>WENV183092915
OLLO01000249
[OLLO] soil metagenome; soil
3878
3952
+
Ala
GGC
[ENA]
¢þ
>WENV183092942
OLLO01000678
[OLLO] soil metagenome; soil
3879
3950
+
Cys
GCA
[ENA]
¢þ
>WENV183092949
OLLO01000754
[OLLO] soil metagenome; soil
4036
3960
-
Val
TAC
[ENA]
¢þ
>WENV183092924
OLLO01000348
[OLLO] soil metagenome; soil
4592
4518
-
Arg
TCT
[ENA]
¢þ
>WENV183092925
OLLO01000350
[OLLO] soil metagenome; soil
5079
5151
+
Gln
TTG
[ENA]
¢þ
>WENV183092953
OLLO01000797
[OLLO] soil metagenome; soil
5190
5279
+
Ser
GCT
[ENA]
¢þ
>WENV183092954
OLLO01000797
[OLLO] soil metagenome; soil
5311
5386
+
Pro
TGG
[ENA]
¢þ
>WENV183092928
OLLO01000363
[OLLO] soil metagenome; soil
5897
5824
-
Gly
CCC
[ENA]
¢þ
>WENV183092950
OLLO01000781
[OLLO] soil metagenome; soil
6232
6306
+
Thr
TGT
[ENA]
¢þ
>WENV183092951
OLLO01000781
[OLLO] soil metagenome; soil
6314
6397
+
Tyr
GTA
[ENA]
¢þ
>WENV183092952
OLLO01000781
[OLLO] soil metagenome; soil
6496
6571
+
Gly
TCC
[ENA]
¢þ
>WENV183092911
OLLO01000114
[OLLO] soil metagenome; soil
15587
15505
-
Leu
TAG
[ENA]
¢þ
>WENV183092916
OLLO01000260
[OLLO] soil metagenome; soil
15914
15841
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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