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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLLU] soil metagenome; soil
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183093164
OLLU01000106
[OLLU] soil metagenome; soil
5
81
+
Arg
ACG
[ENA]
¢þ
>WENV183093160
OLLU01000078
[OLLU] soil metagenome; soil
8
84
+
Asp
GTC
[ENA]
¢þ
>WENV183093159
OLLU01000070
[OLLU] soil metagenome; soil
81
5
-
Pro
TGG
[ENA]
¢þ
>WENV183093161
OLLU01000083
[OLLU] soil metagenome; soil
86
10
-
Arg
ACG
[ENA]
¢þ
>WENV183093155
OLLU01000027
[OLLU] soil metagenome; soil
87
3
-
Leu
CAG
[ENA]
¢þ
>WENV183093162
OLLU01000086
[OLLU] soil metagenome; soil
674
598
-
Arg
TCG
[ENA]
¢þ
>WENV183093156
OLLU01000063
[OLLU] soil metagenome; soil
1165
1091
-
Val
GAC
[ENA]
¢þ
>WENV183093167
OLLU01000119
[OLLU] soil metagenome; soil
1230
1154
-
His
GTG
[ENA]
¢þ
>WENV183093174
OLLU01000139
[OLLU] soil metagenome; soil
1649
1575
-
Val
CAC
[ENA]
¢þ
>WENV183093175
OLLU01000142
[OLLU] soil metagenome; soil
2404
2330
-
Glu
CTC
[ENA]
¢þ
>WENV183093178
OLLU01000150
[OLLU] soil metagenome; soil
3695
3769
+
Gly
GCC
[ENA]
¢þ
>WENV183093157
OLLU01000069
[OLLU] soil metagenome; soil
5022
4934
-
Leu
TAA
[ENA]
¢þ
>WENV183093170
OLLU01000121
[OLLU] soil metagenome; soil
5574
5490
-
Leu
CAA
[ENA]
¢þ
>WENV183093173
OLLU01000137
[OLLU] soil metagenome; soil
5990
5915
-
Trp
CCA
[ENA]
¢þ
>WENV183093171
OLLU01000137
[OLLU] soil metagenome; soil
7357
7441
+
Tyr
GTA
[ENA]
¢þ
>WENV183093172
OLLU01000137
[OLLU] soil metagenome; soil
7561
7634
+
Gly
TCC
[ENA]
¢þ
>WENV183093177
OLLU01000148
[OLLU] soil metagenome; soil
8183
8110
-
Gly
CCC
[ENA]
¢þ
>WENV183093176
OLLU01000146
[OLLU] soil metagenome; soil
9940
10024
+
Leu
GAG
[ENA]
¢þ
>WENV183093158
OLLU01000070
[OLLU] soil metagenome; soil
12554
12480
-
Glu
TTC
[ENA]
¢þ
>WENV183093179
OLLU01000155
[OLLU] soil metagenome; soil
18131
18208
+
Ile2
CAT
[ENA]
¢þ
>WENV183093165
OLLU01000108
[OLLU] soil metagenome; soil
24294
24369
+
Lys
CTT
[ENA]
¢þ
>WENV183093169
OLLU01000121
[OLLU] soil metagenome; soil
32586
32510
-
Pro
CGG
[ENA]
¢þ
>WENV183093168
OLLU01000121
[OLLU] soil metagenome; soil
33387
33461
+
Gln
TTG
[ENA]
¢þ
>WENV183093154
OLLU01000007
[OLLU] soil metagenome; soil
40582
40507
-
Thr
CGT
[ENA]
¢þ
>WENV183093163
OLLU01000091
[OLLU] soil metagenome; soil
55452
55528
+
Arg
CCG
[ENA]
¢þ
>WENV183093166
OLLU01000113
[OLLU] soil metagenome; soil
59104
59178
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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