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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLLW] soil metagenome; soil
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183093235
OLLW01000283
[OLLW] soil metagenome; soil
13
88
+
Phe
GAA
[ENA]
¢þ
>WENV183093234
OLLW01000276
[OLLW] soil metagenome; soil
49
135
+
Leu
CAA
[ENA]
¢þ
>WENV183093240
OLLW01000380
[OLLW] soil metagenome; soil
76
1
-
Phe
GAA
[ENA]
¢þ
>WENV183093246
OLLW01000510
[OLLW] soil metagenome; soil
148
75
-
Lys
CTT
[ENA]
¢þ
>WENV183093228
OLLW01000082
[OLLW] soil metagenome; soil
172
101
-
Gln
TTG
[ENA]
¢þ
>WENV183093233
OLLW01000224
[OLLW] soil metagenome; soil
362
287
-
Pro
TGG
[ENA]
¢þ
>WENV183093238
OLLW01000353
[OLLW] soil metagenome; soil
486
399
-
Ser
GGA
[ENA]
¢þ
>WENV183093232
OLLW01000208
[OLLW] soil metagenome; soil
995
921
-
Asp
GTC
[ENA]
¢þ
>WENV183093237
OLLW01000325
[OLLW] soil metagenome; soil
1277
1202
-
Arg
TCG
[ENA]
¢þ
>WENV183093251
OLLW01000560
[OLLW] soil metagenome; soil
1324
1248
-
Ala
CGC
[ENA]
¢þ
>WENV183093243
OLLW01000414
[OLLW] soil metagenome; soil
1403
1478
+
Val
TAC
[ENA]
¢þ
>WENV183093227
OLLW01000035
[OLLW] soil metagenome; soil
1808
1734
-
Arg
ACG
[ENA]
¢þ
>WENV183093244
OLLW01000419
[OLLW] soil metagenome; soil
2047
2122
+
Asn
GTT
[ENA]
¢þ
>WENV183093241
OLLW01000392
[OLLW] soil metagenome; soil
2267
2340
+
Cys
GCA
[ENA]
¢þ
>WENV183093242
OLLW01000409
[OLLW] soil metagenome; soil
4104
4177
+
His
GTG
[ENA]
¢þ
>WENV183093247
OLLW01000522
[OLLW] soil metagenome; soil
4490
4577
+
Ser
TGA
[ENA]
¢þ
>WENV183093250
OLLW01000557
[OLLW] soil metagenome; soil
6534
6607
+
Lys
TTT
[ENA]
¢þ
>WENV183093236
OLLW01000302
[OLLW] soil metagenome; soil
7182
7272
+
Ser
CGA
[ENA]
¢þ
>WENV183093254
OLLW01000593
[OLLW] soil metagenome; soil
7629
7715
+
Leu
TAA
[ENA]
¢þ
>WENV183093229
OLLW01000096
[OLLW] soil metagenome; soil
7865
7791
-
Ile2
CAT
[ENA]
¢þ
>WENV183093253
OLLW01000585
[OLLW] soil metagenome; soil
8886
8811
-
Glu
TTC
[ENA]
¢þ
>WENV183093258
OLLW01000730
[OLLW] soil metagenome; soil
10123
10196
+
Gly
GCC
[ENA]
¢þ
>WENV183093230
OLLW01000099
[OLLW] soil metagenome; soil
11171
11098
-
Val
CAC
[ENA]
¢þ
>WENV183093239
OLLW01000380
[OLLW] soil metagenome; soil
11776
11692
-
Leu
CAG
[ENA]
¢þ
>WENV183093255
OLLW01000710
[OLLW] soil metagenome; soil
12752
12837
+
Leu
GAG
[ENA]
¢þ
>WENV183093263
OLLW01000781
[OLLW] soil metagenome; soil
14037
13955
-
Leu
TAG
[ENA]
¢þ
>WENV183093231
OLLW01000157
[OLLW] soil metagenome; soil
14573
14647
+
Pro
CGG
[ENA]
¢þ
>WENV183093257
OLLW01000712
[OLLW] soil metagenome; soil
15926
15852
-
Glu
CTC
[ENA]
¢þ
>WENV183093256
OLLW01000712
[OLLW] soil metagenome; soil
16041
15970
-
Gln
CTG
[ENA]
¢þ
>WENV183093245
OLLW01000435
[OLLW] soil metagenome; soil
17156
17079
-
Pro
GGG
[ENA]
¢þ
>WENV183093249
OLLW01000529
[OLLW] soil metagenome; soil
17768
17695
-
Ala
GGC
[ENA]
¢þ
>WENV183093259
OLLW01000741
[OLLW] soil metagenome; soil
22797
22872
+
Thr
TGT
[ENA]
¢þ
>WENV183093248
OLLW01000529
[OLLW] soil metagenome; soil
22859
22787
-
Val
GAC
[ENA]
¢þ
>WENV183093260
OLLW01000741
[OLLW] soil metagenome; soil
22922
23007
+
Tyr
GTA
[ENA]
¢þ
>WENV183093261
OLLW01000741
[OLLW] soil metagenome; soil
23184
23257
+
Gly
TCC
[ENA]
¢þ
>WENV183093262
OLLW01000741
[OLLW] soil metagenome; soil
23472
23545
+
Thr
GGT
[ENA]
¢þ
>WENV183093252
OLLW01000579
[OLLW] soil metagenome; soil
30197
30284
+
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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