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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLLY] soil metagenome; soil
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183093306
OLLY01000073
[OLLY] soil metagenome; soil
138
227
+
Ser
CGA
[ENA]
¢þ
>WENV183093304
OLLY01000032
[OLLY] soil metagenome; soil
1093
1019
-
Lys
TTT
[ENA]
¢þ
>WENV183093340
OLLY01000209
[OLLY] soil metagenome; soil
2455
2547
+
Ser
GCT
[ENA]
¢þ
>WENV183093338
OLLY01000202
[OLLY] soil metagenome; soil
3524
3438
-
Leu
CAG
[ENA]
¢þ
>WENV183093314
OLLY01000087
[OLLY] soil metagenome; soil
4605
4531
-
Thr
CGT
[ENA]
¢þ
>WENV183093311
OLLY01000084
[OLLY] soil metagenome; soil
5264
5350
+
Leu
TAA
[ENA]
¢þ
>WENV183093309
OLLY01000080
[OLLY] soil metagenome; soil
5289
5203
-
Leu
TAG
[ENA]
¢þ
>WENV183093312
OLLY01000084
[OLLY] soil metagenome; soil
5608
5683
+
Asn
GTT
[ENA]
¢þ
>WENV183093323
OLLY01000139
[OLLY] soil metagenome; soil
5850
5774
-
Pro
CGG
[ENA]
¢þ
>WENV183093335
OLLY01000184
[OLLY] soil metagenome; soil
7117
7192
+
Ala
CGC
[ENA]
¢þ
>WENV183093308
OLLY01000080
[OLLY] soil metagenome; soil
7369
7294
-
His
GTG
[ENA]
¢þ
>WENV183093313
OLLY01000085
[OLLY] soil metagenome; soil
9551
9476
-
Thr
TGT
[ENA]
¢þ
>WENV183093318
OLLY01000124
[OLLY] soil metagenome; soil
9651
9575
-
Arg
CCG
[ENA]
¢þ
>WENV183093317
OLLY01000124
[OLLY] soil metagenome; soil
9826
9902
+
Asp
GTC
[ENA]
¢þ
>WENV183093331
OLLY01000155
[OLLY] soil metagenome; soil
10969
10896
-
Gly
TCC
[ENA]
¢þ
>WENV183093305
OLLY01000066
[OLLY] soil metagenome; soil
11376
11303
-
Cys
GCA
[ENA]
¢þ
>WENV183093336
OLLY01000187
[OLLY] soil metagenome; soil
11625
11551
-
Gln
TTG
[ENA]
¢þ
>WENV183093324
OLLY01000146
[OLLY] soil metagenome; soil
17762
17836
+
Val
CAC
[ENA]
¢þ
>WENV183093321
OLLY01000136
[OLLY] soil metagenome; soil
20018
19942
-
Arg
TCT
[ENA]
¢þ
>WENV183093320
OLLY01000136
[OLLY] soil metagenome; soil
20548
20472
-
Pro
TGG
[ENA]
¢þ
>WENV183093307
OLLY01000080
[OLLY] soil metagenome; soil
22459
22384
-
Ala
GGC
[ENA]
¢þ
>WENV183093326
OLLY01000146
[OLLY] soil metagenome; soil
23790
23704
-
Leu
CAA
[ENA]
¢þ
>WENV183093325
OLLY01000146
[OLLY] soil metagenome; soil
23933
24022
+
Ser
GGA
[ENA]
¢þ
>WENV183093330
OLLY01000154
[OLLY] soil metagenome; soil
24183
24107
-
Pro
GGG
[ENA]
¢þ
>WENV183093333
OLLY01000180
[OLLY] soil metagenome; soil
25520
25593
+
Gly
CCC
[ENA]
¢þ
>WENV183093315
OLLY01000100
[OLLY] soil metagenome; soil
25646
25720
+
Val
TAC
[ENA]
¢þ
>WENV183093319
OLLY01000136
[OLLY] soil metagenome; soil
28738
28653
-
Tyr
GTA
[ENA]
¢þ
>WENV183093322
OLLY01000139
[OLLY] soil metagenome; soil
29379
29305
-
Gly
GCC
[ENA]
¢þ
>WENV183093332
OLLY01000158
[OLLY] soil metagenome; soil
29940
29851
-
Ser
TGA
[ENA]
¢þ
>WENV183093316
OLLY01000113
[OLLY] soil metagenome; soil
30095
30019
-
Arg
ACG
[ENA]
¢þ
>WENV183093327
OLLY01000151
[OLLY] soil metagenome; soil
31898
31972
+
Thr
GGT
[ENA]
¢þ
>WENV183093341
OLLY01000209
[OLLY] soil metagenome; soil
32159
32083
-
fMet
CAT
[ENA]
¢þ
>WENV183093334
OLLY01000182
[OLLY] soil metagenome; soil
33242
33168
-
Met
CAT
[ENA]
¢þ
>WENV183093310
OLLY01000081
[OLLY] soil metagenome; soil
35453
35367
-
Leu
GAG
[ENA]
¢þ
>WENV183093337
OLLY01000201
[OLLY] soil metagenome; soil
36225
36150
-
Met
CAT
[ENA]
¢þ
>WENV183093343
OLLY01000210
[OLLY] soil metagenome; soil
40111
40035
-
Arg
CCT
[ENA]
¢þ
>WENV183093342
OLLY01000210
[OLLY] soil metagenome; soil
59784
59709
-
Glu
CTC
[ENA]
¢þ
>WENV183093328
OLLY01000151
[OLLY] soil metagenome; soil
64589
64664
+
Phe
GAA
[ENA]
¢þ
>WENV183093339
OLLY01000204
[OLLY] soil metagenome; soil
72849
72774
-
Glu
TTC
[ENA]
¢þ
>WENV183093329
OLLY01000154
[OLLY] soil metagenome; soil
87522
87449
-
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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