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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLMX] human gut metagenome; human gut
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183093482
OLMX01001177
[OLMX] human gut metagenome; human gut
14
87
+
Ala
TGC
[ENA]
¢þ
>WENV183093483
OLMX01001924
[OLMX] human gut metagenome; human gut
56
128
+
Arg
CCT
[ENA]
¢þ
>WENV183093472
OLMX01000412
[OLMX] human gut metagenome; human gut
86
-1
-
Ser
GCT
[ENA]
¢þ
>WENV183093475
OLMX01000892
[OLMX] human gut metagenome; human gut
112
187
+
Val
TAC
[ENA]
¢þ
>WENV183093473
OLMX01000550
[OLMX] human gut metagenome; human gut
118
192
+
Asp
GTC
[ENA]
¢þ
>WENV183093469
OLMX01000353
[OLMX] human gut metagenome; human gut
123
195
+
Glu
CTC
[ENA]
¢þ
>WENV183093462
OLMX01000308
[OLMX] human gut metagenome; human gut
123
211
+
Ser
GGA
[ENA]
¢þ
>WENV183093477
OLMX01000967
[OLMX] human gut metagenome; human gut
168
240
+
Thr
TGT
[ENA]
¢þ
>WENV183093476
OLMX01000908
[OLMX] human gut metagenome; human gut
186
261
+
Ala
TGC
[ENA]
¢þ
>WENV183093457
OLMX01000173
[OLMX] human gut metagenome; human gut
207
133
-
Ile2
CAT
[ENA]
¢þ
>WENV183093456
OLMX01000144
[OLMX] human gut metagenome; human gut
210
285
+
Pro
CGG
[ENA]
¢þ
>WENV183093478
OLMX01000967
[OLMX] human gut metagenome; human gut
261
344
+
Tyr
GTA
[ENA]
¢þ
>WENV183093479
OLMX01000967
[OLMX] human gut metagenome; human gut
400
474
+
fMet
CAT
[ENA]
¢þ
>WENV183093461
OLMX01000305
[OLMX] human gut metagenome; human gut
401
316
-
Ser
TGA
[ENA]
¢þ
>WENV183093480
OLMX01000967
[OLMX] human gut metagenome; human gut
505
579
+
Phe
GAA
[ENA]
¢þ
>WENV183093481
OLMX01000967
[OLMX] human gut metagenome; human gut
603
677
+
Lys
TTT
[ENA]
¢þ
>WENV183093446
OLMX01000004
[OLMX] human gut metagenome; human gut
1051
1124
+
fMet
CAT
[ENA]
¢þ
>WENV183093474
OLMX01000679
[OLMX] human gut metagenome; human gut
1313
1388
+
Arg
TCT
[ENA]
¢þ
>WENV183093470
OLMX01000381
[OLMX] human gut metagenome; human gut
1405
1334
-
Gln
TTG
[ENA]
¢þ
>WENV183093451
OLMX01000022
[OLMX] human gut metagenome; human gut
1447
1363
-
Leu
CAA
[ENA]
¢þ
>WENV183093450
OLMX01000014
[OLMX] human gut metagenome; human gut
2156
2083
-
Lys
TTT
[ENA]
¢þ
>WENV183093455
OLMX01000137
[OLMX] human gut metagenome; human gut
2266
2339
+
Lys
CTT
[ENA]
¢þ
>WENV183093468
OLMX01000349
[OLMX] human gut metagenome; human gut
2471
2398
-
His
GTG
[ENA]
¢þ
>WENV183093467
OLMX01000349
[OLMX] human gut metagenome; human gut
2548
2477
-
Sup
TCA
[ENA]
¢þ
>WENV183093466
OLMX01000349
[OLMX] human gut metagenome; human gut
2633
2562
-
Gln
TTG
[ENA]
¢þ
>WENV183093471
OLMX01000402
[OLMX] human gut metagenome; human gut
2677
2760
+
Leu
TAG
[ENA]
¢þ
>WENV183093465
OLMX01000349
[OLMX] human gut metagenome; human gut
2722
2640
-
Tyr
GTA
[ENA]
¢þ
>WENV183093464
OLMX01000349
[OLMX] human gut metagenome; human gut
2804
2731
-
Phe
GAA
[ENA]
¢þ
>WENV183093463
OLMX01000349
[OLMX] human gut metagenome; human gut
2884
2813
-
Gln
CTG
[ENA]
¢þ
>WENV183093460
OLMX01000259
[OLMX] human gut metagenome; human gut
3195
3121
-
Thr
TGT
[ENA]
¢þ
>WENV183093459
OLMX01000217
[OLMX] human gut metagenome; human gut
3247
3173
-
Met
CAT
[ENA]
¢þ
>WENV183093453
OLMX01000053
[OLMX] human gut metagenome; human gut
4834
4909
+
His
GTG
[ENA]
¢þ
>WENV183093458
OLMX01000203
[OLMX] human gut metagenome; human gut
5192
5105
-
Leu
TAA
[ENA]
¢þ
>WENV183093452
OLMX01000045
[OLMX] human gut metagenome; human gut
5288
5360
+
Arg
CCT
[ENA]
¢þ
>WENV183093454
OLMX01000082
[OLMX] human gut metagenome; human gut
8323
8407
+
Leu
GAG
[ENA]
¢þ
>WENV183093449
OLMX01000011
[OLMX] human gut metagenome; human gut
11386
11313
-
Trp
CCA
[ENA]
¢þ
>WENV183093448
OLMX01000011
[OLMX] human gut metagenome; human gut
12786
12714
-
Thr
GGT
[ENA]
¢þ
>WENV183093447
OLMX01000011
[OLMX] human gut metagenome; human gut
12968
12886
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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