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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[OLNA] human gut metagenome; human gut
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183093609
OLNA01002545
[OLNA] human gut metagenome; human gut
8
80
+
Arg
CCT
[ENA]
¢þ
>WENV183093605
OLNA01001463
[OLNA] human gut metagenome; human gut
43
118
+
Ala
TGC
[ENA]
¢þ
>WENV183093593
OLNA01000313
[OLNA] human gut metagenome; human gut
94
181
+
Leu
TAA
[ENA]
¢þ
>WENV183093598
OLNA01000580
[OLNA] human gut metagenome; human gut
95
21
-
Pro
TGG
[ENA]
¢þ
>WENV183093600
OLNA01000748
[OLNA] human gut metagenome; human gut
110
182
+
Glu
CTC
[ENA]
¢þ
>WENV183093606
OLNA01001463
[OLNA] human gut metagenome; human gut
123
199
+
Ile
GAT
[ENA]
¢þ
>WENV183093610
OLNA01003005
[OLNA] human gut metagenome; human gut
162
88
-
Asp
GTC
[ENA]
¢þ
>WENV183093608
OLNA01002259
[OLNA] human gut metagenome; human gut
210
285
+
Pro
CGG
[ENA]
¢þ
>WENV183093599
OLNA01000679
[OLNA] human gut metagenome; human gut
257
184
-
Phe
GAA
[ENA]
¢þ
>WENV183093607
OLNA01001463
[OLNA] human gut metagenome; human gut
321
396
+
Val
TAC
[ENA]
¢þ
>WENV183093601
OLNA01000883
[OLNA] human gut metagenome; human gut
383
456
+
Glu
TTC
[ENA]
¢þ
>WENV183093602
OLNA01000883
[OLNA] human gut metagenome; human gut
462
533
+
Gln
TTG
[ENA]
¢þ
>WENV183093603
OLNA01000883
[OLNA] human gut metagenome; human gut
563
648
+
Tyr
GTA
[ENA]
¢þ
>WENV183093597
OLNA01000470
[OLNA] human gut metagenome; human gut
580
651
+
Gln
CTG
[ENA]
¢þ
>WENV183093594
OLNA01000328
[OLNA] human gut metagenome; human gut
813
740
-
Lys
TTT
[ENA]
¢þ
>WENV183093604
OLNA01001214
[OLNA] human gut metagenome; human gut
904
820
-
Leu
TAG
[ENA]
¢þ
>WENV183093583
OLNA01000039
[OLNA] human gut metagenome; human gut
988
1061
+
fMet
CAT
[ENA]
¢þ
>WENV183093591
OLNA01000181
[OLNA] human gut metagenome; human gut
1131
1205
+
Thr
TGT
[ENA]
¢þ
>WENV183093590
OLNA01000160
[OLNA] human gut metagenome; human gut
1153
1082
-
Gln
TTG
[ENA]
¢þ
>WENV183093588
OLNA01000117
[OLNA] human gut metagenome; human gut
1671
1744
+
Lys
CTT
[ENA]
¢þ
>WENV183093587
OLNA01000100
[OLNA] human gut metagenome; human gut
1996
1925
-
Gly
CCC
[ENA]
¢þ
>WENV183093586
OLNA01000100
[OLNA] human gut metagenome; human gut
2101
2028
-
Thr
CGT
[ENA]
¢þ
>WENV183093595
OLNA01000336
[OLNA] human gut metagenome; human gut
2310
2225
-
Ser
TGA
[ENA]
¢þ
>WENV183093584
OLNA01000046
[OLNA] human gut metagenome; human gut
2509
2425
-
Leu
CAA
[ENA]
¢þ
>WENV183093592
OLNA01000212
[OLNA] human gut metagenome; human gut
2531
2615
+
Leu
TAG
[ENA]
¢þ
>WENV183093596
OLNA01000342
[OLNA] human gut metagenome; human gut
2577
2665
+
Ser
GGA
[ENA]
¢þ
>WENV183093585
OLNA01000090
[OLNA] human gut metagenome; human gut
2897
2969
+
Arg
CCT
[ENA]
¢þ
>WENV183093581
OLNA01000017
[OLNA] human gut metagenome; human gut
5934
5859
-
His
GTG
[ENA]
¢þ
>WENV183093589
OLNA01000151
[OLNA] human gut metagenome; human gut
6453
6382
-
Cys
GCA
[ENA]
¢þ
>WENV183093576
OLNA01000003
[OLNA] human gut metagenome; human gut
8134
8208
+
Met
CAT
[ENA]
¢þ
>WENV183093580
OLNA01000008
[OLNA] human gut metagenome; human gut
12564
12638
+
Asn
GTT
[ENA]
¢þ
>WENV183093582
OLNA01000024
[OLNA] human gut metagenome; human gut
13058
13133
+
Val
TAC
[ENA]
¢þ
>WENV183093579
OLNA01000007
[OLNA] human gut metagenome; human gut
16554
16481
-
Trp
CCA
[ENA]
¢þ
>WENV183093578
OLNA01000007
[OLNA] human gut metagenome; human gut
17954
17882
-
Thr
GGT
[ENA]
¢þ
>WENV183093577
OLNA01000007
[OLNA] human gut metagenome; human gut
18136
18054
-
Tyr
GTA
[ENA]
¢þ
>WENV183093575
OLNA01000002
[OLNA] human gut metagenome; human gut
19756
19682
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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