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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OLPJ] human gut metagenome; faeces
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183182087
OLPJ01000273
[OLPJ] human gut metagenome; faeces
57
132
+
fMet
CAT
[ENA]
¢þ
>WENV183182088
OLPJ01000373
[OLPJ] human gut metagenome; faeces
60
151
+
Ser
GGA
[ENA]
¢þ
>WENV183182084
OLPJ01000154
[OLPJ] human gut metagenome; faeces
102
177
+
Ala
TGC
[ENA]
¢þ
>WENV183182090
OLPJ01000509
[OLPJ] human gut metagenome; faeces
178
103
-
Trp
CCA
[ENA]
¢þ
>WENV183182086
OLPJ01000198
[OLPJ] human gut metagenome; faeces
214
140
-
Glu
CTC
[ENA]
¢þ
>WENV183182085
OLPJ01000154
[OLPJ] human gut metagenome; faeces
219
295
+
Ile
GAT
[ENA]
¢þ
>WENV183182091
OLPJ01000518
[OLPJ] human gut metagenome; faeces
349
424
+
Pro
TGG
[ENA]
¢þ
>WENV183182089
OLPJ01000374
[OLPJ] human gut metagenome; faeces
420
492
+
Asn
GTT
[ENA]
¢þ
>WENV183182092
OLPJ01000518
[OLPJ] human gut metagenome; faeces
429
502
+
Arg
TCT
[ENA]
¢þ
>WENV183182082
OLPJ01000001
[OLPJ] human gut metagenome; faeces
8349
8275
-
Ile2
CAT
[ENA]
¢þ
>WENV183182083
OLPJ01000002
[OLPJ] human gut metagenome; faeces
13799
13871
+
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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