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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OLST] human gut metagenome; faeces
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183304713
OLST01000610
[OLST] human gut metagenome; faeces
82
168
+
Leu
AAG
[ENA]
¢þ
>WENV183304722
OLST01001418
[OLST] human gut metagenome; faeces
125
198
+
Lys
CTT
[ENA]
¢þ
>WENV183304723
OLST01001463
[OLST] human gut metagenome; faeces
282
207
-
Thr
GGT
[ENA]
¢þ
>WENV183304712
OLST01000549
[OLST] human gut metagenome; faeces
352
280
-
Glu
CTC
[ENA]
¢þ
>WENV183304726
OLST01001624
[OLST] human gut metagenome; faeces
410
336
-
Met
CAT
[ENA]
¢þ
>WENV183304707
OLST01000326
[OLST] human gut metagenome; faeces
442
518
+
Arg
CCT
[ENA]
¢þ
>WENV183304717
OLST01000826
[OLST] human gut metagenome; faeces
454
381
-
Lys
TTT
[ENA]
¢þ
>WENV183304725
OLST01001624
[OLST] human gut metagenome; faeces
499
425
-
Val
TAC
[ENA]
¢þ
>WENV183304716
OLST01000826
[OLST] human gut metagenome; faeces
558
484
-
Phe
GAA
[ENA]
¢þ
>WENV183304727
OLST01001813
[OLST] human gut metagenome; faeces
591
504
-
Leu
TAA
[ENA]
¢þ
>WENV183304724
OLST01001624
[OLST] human gut metagenome; faeces
610
535
-
Asp
GTC
[ENA]
¢þ
>WENV183304720
OLST01000969
[OLST] human gut metagenome; faeces
625
698
+
Ile
GAT
[ENA]
¢þ
>WENV183304704
OLST01000124
[OLST] human gut metagenome; faeces
692
766
+
Pro
CGG
[ENA]
¢þ
>WENV183304721
OLST01001284
[OLST] human gut metagenome; faeces
790
718
-
Arg
CCG
[ENA]
¢þ
>WENV183304719
OLST01000942
[OLST] human gut metagenome; faeces
820
748
-
Cys
GCA
[ENA]
¢þ
>WENV183304714
OLST01000611
[OLST] human gut metagenome; faeces
924
994
+
Gly
TCC
[ENA]
¢þ
>WENV183304718
OLST01000942
[OLST] human gut metagenome; faeces
929
856
-
Asn
GTT
[ENA]
¢þ
>WENV183304715
OLST01000611
[OLST] human gut metagenome; faeces
998
1071
+
Gly
GCC
[ENA]
¢þ
>WENV183304709
OLST01000349
[OLST] human gut metagenome; faeces
1201
1110
-
Ser
GGA
[ENA]
¢þ
>WENV183304708
OLST01000349
[OLST] human gut metagenome; faeces
1447
1361
-
Ser
TGA
[ENA]
¢þ
>WENV183304710
OLST01000387
[OLST] human gut metagenome; faeces
1507
1578
+
Thr
GGT
[ENA]
¢þ
>WENV183304711
OLST01000444
[OLST] human gut metagenome; faeces
1581
1506
-
Ala
TGC
[ENA]
¢þ
>WENV183304706
OLST01000218
[OLST] human gut metagenome; faeces
1957
1882
-
Ile
GAT
[ENA]
¢þ
>WENV183304705
OLST01000218
[OLST] human gut metagenome; faeces
2052
1979
-
Ala
TGC
[ENA]
¢þ
>WENV183304703
OLST01000010
[OLST] human gut metagenome; faeces
8316
8390
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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