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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLSU] human gut metagenome; faeces
HIT:
68 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183304765
OLSU01001293
[OLSU] human gut metagenome; faeces
46
120
+
Pro
GGG
[ENA]
¢þ
>WENV183304787
OLSU01003094
[OLSU] human gut metagenome; faeces
56
143
+
Leu
TAA
[ENA]
¢þ
>WENV183304795
OLSU01004408
[OLSU] human gut metagenome; faeces
72
147
+
Asn
GTT
[ENA]
¢þ
>WENV183304756
OLSU01000839
[OLSU] human gut metagenome; faeces
78
151
+
Gly
CCC
[ENA]
¢þ
>WENV183304782
OLSU01002298
[OLSU] human gut metagenome; faeces
85
12
-
Lys
TTT
[ENA]
¢þ
>WENV183304764
OLSU01001243
[OLSU] human gut metagenome; faeces
101
182
+
Leu
TAA
[ENA]
¢þ
>WENV183304779
OLSU01002158
[OLSU] human gut metagenome; faeces
155
69
-
Leu
AAG
[ENA]
¢þ
>WENV183304770
OLSU01001616
[OLSU] human gut metagenome; faeces
161
89
-
Glu
TTC
[ENA]
¢þ
>WENV183304784
OLSU01002311
[OLSU] human gut metagenome; faeces
170
88
-
Tyr
GTA
[ENA]
¢þ
>WENV183304741
OLSU01000116
[OLSU] human gut metagenome; faeces
178
96
-
Leu
TAG
[ENA]
¢þ
>WENV183304785
OLSU01002694
[OLSU] human gut metagenome; faeces
202
275
+
Val
CAC
[ENA]
¢þ
>WENV183304794
OLSU01004264
[OLSU] human gut metagenome; faeces
215
288
+
Glu
CTC
[ENA]
¢þ
>WENV183304792
OLSU01003732
[OLSU] human gut metagenome; faeces
218
144
-
Phe
GAA
[ENA]
¢þ
>WENV183304759
OLSU01000874
[OLSU] human gut metagenome; faeces
242
316
+
Ile
GAT
[ENA]
¢þ
>WENV183304774
OLSU01001939
[OLSU] human gut metagenome; faeces
243
159
-
Leu
CAA
[ENA]
¢þ
>WENV183304783
OLSU01002309
[OLSU] human gut metagenome; faeces
265
190
-
Trp
CCA
[ENA]
¢þ
>WENV183304791
OLSU01003732
[OLSU] human gut metagenome; faeces
296
221
-
fMet
CAT
[ENA]
¢þ
>WENV183304786
OLSU01002694
[OLSU] human gut metagenome; faeces
308
383
+
Gly
GCC
[ENA]
¢þ
>WENV183304767
OLSU01001426
[OLSU] human gut metagenome; faeces
345
274
-
Arg
CCG
[ENA]
¢þ
>WENV183304747
OLSU01000372
[OLSU] human gut metagenome; faeces
347
421
+
Pro
CGG
[ENA]
¢þ
>WENV183304740
OLSU01000116
[OLSU] human gut metagenome; faeces
348
274
-
Lys
TTT
[ENA]
¢þ
>WENV183304760
OLSU01000874
[OLSU] human gut metagenome; faeces
355
428
+
Ala
TGC
[ENA]
¢þ
>WENV183304788
OLSU01003364
[OLSU] human gut metagenome; faeces
368
439
+
Gln
TTG
[ENA]
¢þ
>WENV183304730
OLSU01000085
[OLSU] human gut metagenome; faeces
377
302
-
Arg
CCG
[ENA]
¢þ
>WENV183304790
OLSU01003732
[OLSU] human gut metagenome; faeces
389
317
-
Thr
TGT
[ENA]
¢þ
>WENV183304769
OLSU01001517
[OLSU] human gut metagenome; faeces
416
342
-
Glu
CTC
[ENA]
¢þ
>WENV183304758
OLSU01000869
[OLSU] human gut metagenome; faeces
417
491
+
Val
TAC
[ENA]
¢þ
>WENV183304739
OLSU01000116
[OLSU] human gut metagenome; faeces
429
355
-
Gln
TTG
[ENA]
¢þ
>WENV183304761
OLSU01000874
[OLSU] human gut metagenome; faeces
429
502
+
Ala
GGC
[ENA]
¢þ
>WENV183304793
OLSU01003894
[OLSU] human gut metagenome; faeces
494
403
-
Ser
GGA
[ENA]
¢þ
>WENV183304789
OLSU01003732
[OLSU] human gut metagenome; faeces
510
437
-
Glu
TTC
[ENA]
¢þ
>WENV183304738
OLSU01000116
[OLSU] human gut metagenome; faeces
511
437
-
His
GTG
[ENA]
¢þ
>WENV183304778
OLSU01002023
[OLSU] human gut metagenome; faeces
534
459
-
Ile
GAT
[ENA]
¢þ
>WENV183304768
OLSU01001517
[OLSU] human gut metagenome; faeces
561
486
-
Lys
CTT
[ENA]
¢þ
>WENV183304772
OLSU01001739
[OLSU] human gut metagenome; faeces
562
489
-
Asn
GTT
[ENA]
¢þ
>WENV183304773
OLSU01001852
[OLSU] human gut metagenome; faeces
571
645
+
Arg
ACG
[ENA]
¢þ
>WENV183304737
OLSU01000116
[OLSU] human gut metagenome; faeces
591
516
-
Arg
TCT
[ENA]
¢þ
>WENV183304777
OLSU01002023
[OLSU] human gut metagenome; faeces
629
556
-
Ala
TGC
[ENA]
¢þ
>WENV183304776
OLSU01002016
[OLSU] human gut metagenome; faeces
642
571
-
Trp
CCA
[ENA]
¢þ
>WENV183304763
OLSU01001143
[OLSU] human gut metagenome; faeces
668
744
+
fMet
CAT
[ENA]
¢þ
>WENV183304736
OLSU01000116
[OLSU] human gut metagenome; faeces
682
612
-
Gly
TCC
[ENA]
¢þ
>WENV183304780
OLSU01002162
[OLSU] human gut metagenome; faeces
704
789
+
Leu
CAG
[ENA]
¢þ
>WENV183304771
OLSU01001689
[OLSU] human gut metagenome; faeces
713
640
-
Arg
CCT
[ENA]
¢þ
>WENV183304749
OLSU01000384
[OLSU] human gut metagenome; faeces
714
803
+
Ser
GCT
[ENA]
¢þ
>WENV183304781
OLSU01002190
[OLSU] human gut metagenome; faeces
740
813
+
Gly
TCC
[ENA]
¢þ
>WENV183304775
OLSU01002015
[OLSU] human gut metagenome; faeces
756
845
+
Ser
GCT
[ENA]
¢þ
>WENV183304735
OLSU01000116
[OLSU] human gut metagenome; faeces
792
717
-
Pro
TGG
[ENA]
¢þ
>WENV183304762
OLSU01001096
[OLSU] human gut metagenome; faeces
858
932
+
Ile2
CAT
[ENA]
¢þ
>WENV183304766
OLSU01001315
[OLSU] human gut metagenome; faeces
1092
1016
-
Arg
CCT
[ENA]
¢þ
>WENV183304728
OLSU01000053
[OLSU] human gut metagenome; faeces
1135
1217
+
Tyr
GTA
[ENA]
¢þ
>WENV183304757
OLSU01000862
[OLSU] human gut metagenome; faeces
1235
1321
+
Ser
TGA
[ENA]
¢þ
>WENV183304755
OLSU01000719
[OLSU] human gut metagenome; faeces
1284
1200
-
Tyr
GTA
[ENA]
¢þ
>WENV183304729
OLSU01000053
[OLSU] human gut metagenome; faeces
1295
1369
+
Met
CAT
[ENA]
¢þ
>WENV183304732
OLSU01000104
[OLSU] human gut metagenome; faeces
1337
1264
-
Lys
CTT
[ENA]
¢þ
>WENV183304754
OLSU01000719
[OLSU] human gut metagenome; faeces
1362
1288
-
Val
TAC
[ENA]
¢þ
>WENV183304745
OLSU01000253
[OLSU] human gut metagenome; faeces
1435
1361
-
Gln
CTG
[ENA]
¢þ
>WENV183304752
OLSU01000492
[OLSU] human gut metagenome; faeces
1441
1354
-
Ser
GGA
[ENA]
¢þ
>WENV183304731
OLSU01000088
[OLSU] human gut metagenome; faeces
1447
1373
-
Pro
CGG
[ENA]
¢þ
>WENV183304753
OLSU01000719
[OLSU] human gut metagenome; faeces
1473
1398
-
Asp
GTC
[ENA]
¢þ
>WENV183304744
OLSU01000253
[OLSU] human gut metagenome; faeces
1546
1473
-
Glu
CTC
[ENA]
¢þ
>WENV183304746
OLSU01000331
[OLSU] human gut metagenome; faeces
1609
1535
-
Thr
TGT
[ENA]
¢þ
>WENV183304748
OLSU01000378
[OLSU] human gut metagenome; faeces
1754
1844
+
Leu
GAG
[ENA]
¢þ
>WENV183304743
OLSU01000225
[OLSU] human gut metagenome; faeces
1769
1841
+
Gln
CTG
[ENA]
¢þ
>WENV183304751
OLSU01000392
[OLSU] human gut metagenome; faeces
1871
1799
-
Cys
GCA
[ENA]
¢þ
>WENV183304734
OLSU01000111
[OLSU] human gut metagenome; faeces
1922
1841
-
Leu
TAG
[ENA]
¢þ
>WENV183304750
OLSU01000392
[OLSU] human gut metagenome; faeces
1980
1907
-
Asn
GTT
[ENA]
¢þ
>WENV183304733
OLSU01000111
[OLSU] human gut metagenome; faeces
2065
1990
-
Thr
CGT
[ENA]
¢þ
>WENV183304742
OLSU01000186
[OLSU] human gut metagenome; faeces
2871
2797
-
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK