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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLTH] human gut metagenome; faeces
HIT:
60 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183307479
OLTH01003750
[OLTH] human gut metagenome; faeces
79
152
+
Gly
GCC
[ENA]
¢þ
>WENV183307443
OLTH01000211
[OLTH] human gut metagenome; faeces
97
25
-
Glu
TTC
[ENA]
¢þ
>WENV183307465
OLTH01001732
[OLTH] human gut metagenome; faeces
101
176
+
Val
TAC
[ENA]
¢þ
>WENV183307441
OLTH01000122
[OLTH] human gut metagenome; faeces
119
43
-
Arg
CCG
[ENA]
¢þ
>WENV183307463
OLTH01001469
[OLTH] human gut metagenome; faeces
121
45
-
Pro
TGG
[ENA]
¢þ
>WENV183307457
OLTH01001002
[OLTH] human gut metagenome; faeces
135
50
-
Leu
CAG
[ENA]
¢þ
>WENV183307475
OLTH01002644
[OLTH] human gut metagenome; faeces
145
236
+
Ser
GGA
[ENA]
¢þ
>WENV183307470
OLTH01002093
[OLTH] human gut metagenome; faeces
151
226
+
Ala
GGC
[ENA]
¢þ
>WENV183307450
OLTH01000799
[OLTH] human gut metagenome; faeces
166
93
-
Asn
GTT
[ENA]
¢þ
>WENV183307466
OLTH01001732
[OLTH] human gut metagenome; faeces
179
254
+
Lys
TTT
[ENA]
¢þ
>WENV183307480
OLTH01003750
[OLTH] human gut metagenome; faeces
182
253
+
Cys
GCA
[ENA]
¢þ
>WENV183307469
OLTH01001976
[OLTH] human gut metagenome; faeces
199
115
-
Tyr
GTA
[ENA]
¢þ
>WENV183307460
OLTH01001154
[OLTH] human gut metagenome; faeces
227
301
+
Arg
CCG
[ENA]
¢þ
>WENV183307485
OLTH01004065
[OLTH] human gut metagenome; faeces
227
303
+
Val
GAC
[ENA]
¢þ
>WENV183307477
OLTH01003014
[OLTH] human gut metagenome; faeces
230
305
+
Ile2
CAT
[ENA]
¢þ
>WENV183307474
OLTH01002449
[OLTH] human gut metagenome; faeces
240
164
-
Glu
CTC
[ENA]
¢þ
>WENV183307483
OLTH01004036
[OLTH] human gut metagenome; faeces
241
316
+
Gly
GCC
[ENA]
¢þ
>WENV183307456
OLTH01001002
[OLTH] human gut metagenome; faeces
256
184
-
Lys
TTT
[ENA]
¢þ
>WENV183307449
OLTH01000799
[OLTH] human gut metagenome; faeces
266
193
-
Asn
GTT
[ENA]
¢þ
>WENV183307426
OLTH01000002
[OLTH] human gut metagenome; faeces
282
355
+
Glu
CTC
[ENA]
¢þ
>WENV183307468
OLTH01001976
[OLTH] human gut metagenome; faeces
283
208
-
Thr
TGT
[ENA]
¢þ
>WENV183307481
OLTH01003750
[OLTH] human gut metagenome; faeces
293
365
+
Val
GAC
[ENA]
¢þ
>WENV183307484
OLTH01004036
[OLTH] human gut metagenome; faeces
320
394
+
Val
GAC
[ENA]
¢þ
>WENV183307473
OLTH01002449
[OLTH] human gut metagenome; faeces
331
258
-
Gln
CTG
[ENA]
¢þ
>WENV183307459
OLTH01001114
[OLTH] human gut metagenome; faeces
335
262
-
Gly
CCC
[ENA]
¢þ
>WENV183307472
OLTH01002401
[OLTH] human gut metagenome; faeces
364
279
-
Ser
GGA
[ENA]
¢þ
>WENV183307455
OLTH01001002
[OLTH] human gut metagenome; faeces
365
291
-
Phe
GAA
[ENA]
¢þ
>WENV183307478
OLTH01003565
[OLTH] human gut metagenome; faeces
371
446
+
Asn
GTT
[ENA]
¢þ
>WENV183307462
OLTH01001389
[OLTH] human gut metagenome; faeces
375
302
-
Gly
CCC
[ENA]
¢þ
>WENV183307452
OLTH01000923
[OLTH] human gut metagenome; faeces
388
313
-
Ile
GAT
[ENA]
¢þ
>WENV183307427
OLTH01000002
[OLTH] human gut metagenome; faeces
393
467
+
Gln
CTG
[ENA]
¢þ
>WENV183307482
OLTH01003750
[OLTH] human gut metagenome; faeces
410
483
+
Val
CAC
[ENA]
¢þ
>WENV183307464
OLTH01001494
[OLTH] human gut metagenome; faeces
426
502
+
Pro
CGG
[ENA]
¢þ
>WENV183307467
OLTH01001852
[OLTH] human gut metagenome; faeces
434
521
+
Ser
GGA
[ENA]
¢þ
>WENV183307454
OLTH01001002
[OLTH] human gut metagenome; faeces
458
385
-
fMet
CAT
[ENA]
¢þ
>WENV183307451
OLTH01000923
[OLTH] human gut metagenome; faeces
483
410
-
Ala
TGC
[ENA]
¢þ
>WENV183307476
OLTH01002674
[OLTH] human gut metagenome; faeces
499
581
+
Tyr
GTA
[ENA]
¢þ
>WENV183307471
OLTH01002192
[OLTH] human gut metagenome; faeces
553
637
+
Leu
TAA
[ENA]
¢þ
>WENV183307448
OLTH01000574
[OLTH] human gut metagenome; faeces
674
601
-
Gly
TCC
[ENA]
¢þ
>WENV183307445
OLTH01000468
[OLTH] human gut metagenome; faeces
738
662
-
Arg
TCT
[ENA]
¢þ
>WENV183307461
OLTH01001354
[OLTH] human gut metagenome; faeces
801
876
+
Phe
GAA
[ENA]
¢þ
>WENV183307458
OLTH01001011
[OLTH] human gut metagenome; faeces
840
914
+
His
GTG
[ENA]
¢þ
>WENV183307453
OLTH01000963
[OLTH] human gut metagenome; faeces
1036
961
-
Trp
CCA
[ENA]
¢þ
>WENV183307446
OLTH01000475
[OLTH] human gut metagenome; faeces
1045
1134
+
Ser
GCT
[ENA]
¢þ
>WENV183307447
OLTH01000523
[OLTH] human gut metagenome; faeces
1124
1200
+
Pro
GGG
[ENA]
¢þ
>WENV183307435
OLTH01000039
[OLTH] human gut metagenome; faeces
1288
1363
+
Glu
TTC
[ENA]
¢þ
>WENV183307438
OLTH01000041
[OLTH] human gut metagenome; faeces
1517
1591
+
Ile
TAT
[ENA]
¢þ
>WENV183307442
OLTH01000200
[OLTH] human gut metagenome; faeces
1799
1873
+
Thr
TGT
[ENA]
¢þ
>WENV183307444
OLTH01000274
[OLTH] human gut metagenome; faeces
2002
1929
-
Arg
CCT
[ENA]
¢þ
>WENV183307428
OLTH01000013
[OLTH] human gut metagenome; faeces
2147
2221
+
Val
TAC
[ENA]
¢þ
>WENV183307439
OLTH01000068
[OLTH] human gut metagenome; faeces
2328
2255
-
Lys
TTT
[ENA]
¢þ
>WENV183307440
OLTH01000086
[OLTH] human gut metagenome; faeces
3610
3536
-
Ala
GGC
[ENA]
¢þ
>WENV183307431
OLTH01000021
[OLTH] human gut metagenome; faeces
3613
3540
-
Ala
GGC
[ENA]
¢þ
>WENV183307430
OLTH01000021
[OLTH] human gut metagenome; faeces
3687
3614
-
Ala
TGC
[ENA]
¢þ
>WENV183307429
OLTH01000021
[OLTH] human gut metagenome; faeces
3803
3729
-
Ile
GAT
[ENA]
¢þ
>WENV183307434
OLTH01000028
[OLTH] human gut metagenome; faeces
4409
4335
-
Pro
CGG
[ENA]
¢þ
>WENV183307436
OLTH01000039
[OLTH] human gut metagenome; faeces
4726
4802
+
Asp
GTC
[ENA]
¢þ
>WENV183307437
OLTH01000039
[OLTH] human gut metagenome; faeces
4811
4886
+
Trp
CCA
[ENA]
¢þ
>WENV183307432
OLTH01000023
[OLTH] human gut metagenome; faeces
5580
5655
+
Thr
CGT
[ENA]
¢þ
>WENV183307433
OLTH01000023
[OLTH] human gut metagenome; faeces
5748
5829
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK