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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OLTN] human gut metagenome; faeces
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183307730
OLTN01000727
[OLTN] human gut metagenome; faeces
69
143
+
Phe
GAA
[ENA]
¢þ
>WENV183307734
OLTN01001266
[OLTN] human gut metagenome; faeces
92
168
+
Asp
GTC
[ENA]
¢þ
>WENV183307735
OLTN01001266
[OLTN] human gut metagenome; faeces
172
247
+
Thr
GGT
[ENA]
¢þ
>WENV183307731
OLTN01000727
[OLTN] human gut metagenome; faeces
173
246
+
Lys
TTT
[ENA]
¢þ
>WENV183307728
OLTN01000218
[OLTN] human gut metagenome; faeces
173
249
+
Pro
TGG
[ENA]
¢þ
>WENV183307729
OLTN01000218
[OLTN] human gut metagenome; faeces
254
324
+
Gly
TCC
[ENA]
¢þ
>WENV183307738
OLTN01001325
[OLTN] human gut metagenome; faeces
279
204
-
Val
GAC
[ENA]
¢þ
>WENV183307739
OLTN01001656
[OLTN] human gut metagenome; faeces
334
405
+
Thr
GGT
[ENA]
¢þ
>WENV183307737
OLTN01001308
[OLTN] human gut metagenome; faeces
380
452
+
Lys
CTT
[ENA]
¢þ
>WENV183307720
OLTN01000119
[OLTN] human gut metagenome; faeces
405
479
+
Asn
GTT
[ENA]
¢þ
>WENV183307736
OLTN01001307
[OLTN] human gut metagenome; faeces
425
500
+
Arg
ACG
[ENA]
¢þ
>WENV183307733
OLTN01001063
[OLTN] human gut metagenome; faeces
431
518
+
Ser
TGA
[ENA]
¢þ
>WENV183307732
OLTN01001060
[OLTN] human gut metagenome; faeces
488
397
-
Ser
GGA
[ENA]
¢þ
>WENV183307721
OLTN01000119
[OLTN] human gut metagenome; faeces
523
594
+
Glu
TTC
[ENA]
¢þ
>WENV183307716
OLTN01000020
[OLTN] human gut metagenome; faeces
623
698
+
Ala
TGC
[ENA]
¢þ
>WENV183307719
OLTN01000103
[OLTN] human gut metagenome; faeces
623
698
+
Lys
CTT
[ENA]
¢þ
>WENV183307727
OLTN01000143
[OLTN] human gut metagenome; faeces
636
560
-
Arg
CCG
[ENA]
¢þ
>WENV183307722
OLTN01000119
[OLTN] human gut metagenome; faeces
643
715
+
Thr
TGT
[ENA]
¢þ
>WENV183307717
OLTN01000020
[OLTN] human gut metagenome; faeces
702
778
+
Ile
GAT
[ENA]
¢þ
>WENV183307723
OLTN01000119
[OLTN] human gut metagenome; faeces
719
794
+
Ile2
CAT
[ENA]
¢þ
>WENV183307724
OLTN01000119
[OLTN] human gut metagenome; faeces
808
883
+
Asp
GTC
[ENA]
¢þ
>WENV183307725
OLTN01000119
[OLTN] human gut metagenome; faeces
924
998
+
Val
TAC
[ENA]
¢þ
>WENV183307718
OLTN01000092
[OLTN] human gut metagenome; faeces
980
1066
+
Leu
AAG
[ENA]
¢þ
>WENV183307726
OLTN01000119
[OLTN] human gut metagenome; faeces
1013
1087
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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