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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OLTP] human gut metagenome; faeces
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183307782
OLTP01002453
[OLTP] human gut metagenome; faeces
111
26
-
Ser
TGA
[ENA]
¢þ
>WENV183307761
OLTP01000001
[OLTP] human gut metagenome; faeces
140
216
+
Arg
CCT
[ENA]
¢þ
>WENV183307777
OLTP01001225
[OLTP] human gut metagenome; faeces
155
64
-
Ser
CGA
[ENA]
¢þ
>WENV183307762
OLTP01000015
[OLTP] human gut metagenome; faeces
194
269
+
Ala
TGC
[ENA]
¢þ
>WENV183307778
OLTP01001289
[OLTP] human gut metagenome; faeces
209
133
-
Ile
TAT
[ENA]
¢þ
>WENV183307780
OLTP01001760
[OLTP] human gut metagenome; faeces
239
314
+
Thr
CGT
[ENA]
¢þ
>WENV183307783
OLTP01002495
[OLTP] human gut metagenome; faeces
249
174
-
Gly
CCC
[ENA]
¢þ
>WENV183307779
OLTP01001513
[OLTP] human gut metagenome; faeces
269
345
+
Val
CAC
[ENA]
¢þ
>WENV183307784
OLTP01002500
[OLTP] human gut metagenome; faeces
270
344
+
Glu
CTC
[ENA]
¢þ
>WENV183307763
OLTP01000015
[OLTP] human gut metagenome; faeces
273
349
+
Ile
GAT
[ENA]
¢þ
>WENV183307776
OLTP01001225
[OLTP] human gut metagenome; faeces
316
225
-
Ser
GGA
[ENA]
¢þ
>WENV183307781
OLTP01002379
[OLTP] human gut metagenome; faeces
436
350
-
Leu
AAG
[ENA]
¢þ
>WENV183307773
OLTP01000689
[OLTP] human gut metagenome; faeces
575
649
+
His
GTG
[ENA]
¢þ
>WENV183307772
OLTP01000336
[OLTP] human gut metagenome; faeces
614
542
-
Met
CAT
[ENA]
¢þ
>WENV183307774
OLTP01000689
[OLTP] human gut metagenome; faeces
657
731
+
Gln
TTG
[ENA]
¢þ
>WENV183307775
OLTP01000689
[OLTP] human gut metagenome; faeces
739
813
+
Lys
TTT
[ENA]
¢þ
>WENV183307771
OLTP01000336
[OLTP] human gut metagenome; faeces
888
817
-
Gln
TTG
[ENA]
¢þ
>WENV183307766
OLTP01000089
[OLTP] human gut metagenome; faeces
1658
1733
+
Asn
GTT
[ENA]
¢þ
>WENV183307767
OLTP01000089
[OLTP] human gut metagenome; faeces
1734
1807
+
Glu
TTC
[ENA]
¢þ
>WENV183307768
OLTP01000089
[OLTP] human gut metagenome; faeces
1841
1913
+
Thr
TGT
[ENA]
¢þ
>WENV183307769
OLTP01000089
[OLTP] human gut metagenome; faeces
1917
1992
+
Ile2
CAT
[ENA]
¢þ
>WENV183307770
OLTP01000089
[OLTP] human gut metagenome; faeces
2006
2081
+
Asp
GTC
[ENA]
¢þ
>WENV183307765
OLTP01000050
[OLTP] human gut metagenome; faeces
2538
2467
-
Thr
TGT
[ENA]
¢þ
>WENV183307764
OLTP01000015
[OLTP] human gut metagenome; faeces
3673
3748
+
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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