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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OLTS] human gut metagenome; faeces
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183307881
OLTS01001209
[OLTS] human gut metagenome; faeces
60
130
+
Gly
TCC
[ENA]
¢þ
>WENV183307889
OLTS01001566
[OLTS] human gut metagenome; faeces
62
137
+
Asp
GTC
[ENA]
¢þ
>WENV183307894
OLTS01002545
[OLTS] human gut metagenome; faeces
72
158
+
Leu
CAG
[ENA]
¢þ
>WENV183307882
OLTS01001209
[OLTS] human gut metagenome; faeces
134
207
+
Gly
GCC
[ENA]
¢þ
>WENV183307890
OLTS01001566
[OLTS] human gut metagenome; faeces
173
247
+
Val
TAC
[ENA]
¢þ
>WENV183307893
OLTS01002424
[OLTS] human gut metagenome; faeces
199
274
+
Val
TAC
[ENA]
¢þ
>WENV183307867
OLTS01000087
[OLTS] human gut metagenome; faeces
239
312
+
Ala
TGC
[ENA]
¢þ
>WENV183307878
OLTS01000984
[OLTS] human gut metagenome; faeces
249
323
+
Pro
GGG
[ENA]
¢þ
>WENV183307891
OLTS01001566
[OLTS] human gut metagenome; faeces
249
336
+
Leu
TAA
[ENA]
¢þ
>WENV183307873
OLTS01000547
[OLTS] human gut metagenome; faeces
333
417
+
Leu
GAG
[ENA]
¢þ
>WENV183307868
OLTS01000087
[OLTS] human gut metagenome; faeces
335
411
+
Ile
GAT
[ENA]
¢þ
>WENV183307887
OLTS01001399
[OLTS] human gut metagenome; faeces
351
278
-
Lys
TTT
[ENA]
¢þ
>WENV183307888
OLTS01001552
[OLTS] human gut metagenome; faeces
360
436
+
Arg
CCT
[ENA]
¢þ
>WENV183307895
OLTS01003032
[OLTS] human gut metagenome; faeces
382
308
-
Ala
GGC
[ENA]
¢þ
>WENV183307886
OLTS01001399
[OLTS] human gut metagenome; faeces
434
360
-
Gln
TTG
[ENA]
¢þ
>WENV183307869
OLTS01000131
[OLTS] human gut metagenome; faeces
494
569
+
Lys
CTT
[ENA]
¢þ
>WENV183307885
OLTS01001399
[OLTS] human gut metagenome; faeces
516
442
-
His
GTG
[ENA]
¢þ
>WENV183307871
OLTS01000201
[OLTS] human gut metagenome; faeces
521
595
+
Arg
ACG
[ENA]
¢þ
>WENV183307880
OLTS01001160
[OLTS] human gut metagenome; faeces
528
437
-
Ser
GGA
[ENA]
¢þ
>WENV183307892
OLTS01002255
[OLTS] human gut metagenome; faeces
554
468
-
Leu
AAG
[ENA]
¢þ
>WENV183307884
OLTS01001399
[OLTS] human gut metagenome; faeces
595
521
-
Arg
TCT
[ENA]
¢þ
>WENV183307879
OLTS01001160
[OLTS] human gut metagenome; faeces
622
535
-
Ser
TGA
[ENA]
¢þ
>WENV183307870
OLTS01000131
[OLTS] human gut metagenome; faeces
628
702
+
Glu
CTC
[ENA]
¢þ
>WENV183307883
OLTS01001399
[OLTS] human gut metagenome; faeces
687
617
-
Gly
TCC
[ENA]
¢þ
>WENV183307877
OLTS01000677
[OLTS] human gut metagenome; faeces
798
723
-
Arg
CCT
[ENA]
¢þ
>WENV183307876
OLTS01000659
[OLTS] human gut metagenome; faeces
812
741
-
Cys
GCA
[ENA]
¢þ
>WENV183307875
OLTS01000659
[OLTS] human gut metagenome; faeces
923
850
-
Glu
TTC
[ENA]
¢þ
>WENV183307874
OLTS01000659
[OLTS] human gut metagenome; faeces
1000
926
-
Asn
GTT
[ENA]
¢þ
>WENV183307872
OLTS01000250
[OLTS] human gut metagenome; faeces
1273
1345
+
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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