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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLTU] human gut metagenome; faeces
HIT:
70 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183307993
OLTU01003067
[OLTU] human gut metagenome; faeces
3
95
+
Ser
CGA
[ENA]
¢þ
>WENV183307973
OLTU01001861
[OLTU] human gut metagenome; faeces
19
105
+
Leu
CAG
[ENA]
¢þ
>WENV183307968
OLTU01001112
[OLTU] human gut metagenome; faeces
39
113
+
Val
GAC
[ENA]
¢þ
>WENV183308012
OLTU01005450
[OLTU] human gut metagenome; faeces
71
147
+
Arg
TCT
[ENA]
¢þ
>WENV183308009
OLTU01005282
[OLTU] human gut metagenome; faeces
77
151
+
Ala
GGC
[ENA]
¢þ
>WENV183307982
OLTU01002241
[OLTU] human gut metagenome; faeces
99
25
-
Lys
TTT
[ENA]
¢þ
>WENV183307992
OLTU01002910
[OLTU] human gut metagenome; faeces
106
19
-
Ser
TGA
[ENA]
¢þ
>WENV183307986
OLTU01002404
[OLTU] human gut metagenome; faeces
114
190
+
Pro
TGG
[ENA]
¢þ
>WENV183307970
OLTU01001283
[OLTU] human gut metagenome; faeces
127
209
+
Leu
CAA
[ENA]
¢þ
>WENV183307989
OLTU01002452
[OLTU] human gut metagenome; faeces
153
63
-
Ser
GCT
[ENA]
¢þ
>WENV183308011
OLTU01005389
[OLTU] human gut metagenome; faeces
161
71
-
Ser
GGA
[ENA]
¢þ
>WENV183307981
OLTU01002241
[OLTU] human gut metagenome; faeces
176
104
-
Gln
TTG
[ENA]
¢þ
>WENV183307999
OLTU01004090
[OLTU] human gut metagenome; faeces
179
253
+
Arg
CCG
[ENA]
¢þ
>WENV183307985
OLTU01002338
[OLTU] human gut metagenome; faeces
181
108
-
Gly
CCC
[ENA]
¢þ
>WENV183307995
OLTU01003407
[OLTU] human gut metagenome; faeces
182
97
-
Leu
AAG
[ENA]
¢þ
>WENV183308006
OLTU01004675
[OLTU] human gut metagenome; faeces
207
132
-
His
GTG
[ENA]
¢þ
>WENV183307963
OLTU01000632
[OLTU] human gut metagenome; faeces
218
292
+
His
GTG
[ENA]
¢þ
>WENV183307997
OLTU01003744
[OLTU] human gut metagenome; faeces
243
318
+
Ile2
CAT
[ENA]
¢þ
>WENV183308000
OLTU01004093
[OLTU] human gut metagenome; faeces
262
335
+
Ala
GGC
[ENA]
¢þ
>WENV183307988
OLTU01002452
[OLTU] human gut metagenome; faeces
271
183
-
Ser
TGA
[ENA]
¢þ
>WENV183307980
OLTU01002241
[OLTU] human gut metagenome; faeces
299
226
-
His
GTG
[ENA]
¢þ
>WENV183308010
OLTU01005366
[OLTU] human gut metagenome; faeces
306
379
+
Gly
TCC
[ENA]
¢þ
>WENV183308005
OLTU01004675
[OLTU] human gut metagenome; faeces
318
236
-
Leu
TAG
[ENA]
¢þ
>WENV183307996
OLTU01003558
[OLTU] human gut metagenome; faeces
327
253
-
Gly
GCC
[ENA]
¢þ
>WENV183308002
OLTU01004375
[OLTU] human gut metagenome; faeces
331
257
-
Val
CAC
[ENA]
¢þ
>WENV183307949
OLTU01000138
[OLTU] human gut metagenome; faeces
333
406
+
Thr
CGT
[ENA]
¢þ
>WENV183307972
OLTU01001425
[OLTU] human gut metagenome; faeces
345
418
+
Val
CAC
[ENA]
¢þ
>WENV183307956
OLTU01000519
[OLTU] human gut metagenome; faeces
355
281
-
Thr
TGT
[ENA]
¢þ
>WENV183308007
OLTU01005122
[OLTU] human gut metagenome; faeces
376
450
+
Thr
CGT
[ENA]
¢þ
>WENV183307979
OLTU01002241
[OLTU] human gut metagenome; faeces
379
305
-
Arg
TCT
[ENA]
¢þ
>WENV183307987
OLTU01002428
[OLTU] human gut metagenome; faeces
389
305
-
Leu
GAG
[ENA]
¢þ
>WENV183307974
OLTU01002061
[OLTU] human gut metagenome; faeces
408
482
+
Val
TAC
[ENA]
¢þ
>WENV183307998
OLTU01003820
[OLTU] human gut metagenome; faeces
415
340
-
Thr
GGT
[ENA]
¢þ
>WENV183308004
OLTU01004675
[OLTU] human gut metagenome; faeces
450
374
-
Glu
TTC
[ENA]
¢þ
>WENV183308008
OLTU01005270
[OLTU] human gut metagenome; faeces
470
398
-
Asn
GTT
[ENA]
¢þ
>WENV183308001
OLTU01004235
[OLTU] human gut metagenome; faeces
471
544
+
Asn
GTT
[ENA]
¢þ
>WENV183307975
OLTU01002061
[OLTU] human gut metagenome; faeces
487
559
+
Thr
TGT
[ENA]
¢þ
>WENV183307961
OLTU01000608
[OLTU] human gut metagenome; faeces
546
620
+
Cys
GCA
[ENA]
¢þ
>WENV183308003
OLTU01004675
[OLTU] human gut metagenome; faeces
549
474
-
Met
CAT
[ENA]
¢þ
>WENV183307976
OLTU01002061
[OLTU] human gut metagenome; faeces
578
654
+
Met
CAT
[ENA]
¢þ
>WENV183307984
OLTU01002289
[OLTU] human gut metagenome; faeces
599
675
+
Arg
CCT
[ENA]
¢þ
>WENV183307990
OLTU01002507
[OLTU] human gut metagenome; faeces
602
517
-
Ser
GCT
[ENA]
¢þ
>WENV183307945
OLTU01000067
[OLTU] human gut metagenome; faeces
612
538
-
Asn
GTT
[ENA]
¢þ
>WENV183307991
OLTU01002863
[OLTU] human gut metagenome; faeces
621
534
-
Leu
CAG
[ENA]
¢þ
>WENV183307962
OLTU01000608
[OLTU] human gut metagenome; faeces
644
719
+
Glu
TTC
[ENA]
¢þ
>WENV183307955
OLTU01000511
[OLTU] human gut metagenome; faeces
664
589
-
Arg
CCT
[ENA]
¢þ
>WENV183307994
OLTU01003241
[OLTU] human gut metagenome; faeces
723
649
-
Gln
TTG
[ENA]
¢þ
>WENV183307983
OLTU01002275
[OLTU] human gut metagenome; faeces
735
662
-
Arg
GCG
[ENA]
¢þ
>WENV183307977
OLTU01002139
[OLTU] human gut metagenome; faeces
773
848
+
Lys
CTT
[ENA]
¢þ
>WENV183307954
OLTU01000420
[OLTU] human gut metagenome; faeces
810
726
-
Leu
GAG
[ENA]
¢þ
>WENV183307957
OLTU01000584
[OLTU] human gut metagenome; faeces
821
892
+
Gln
CTG
[ENA]
¢þ
>WENV183307978
OLTU01002139
[OLTU] human gut metagenome; faeces
850
924
+
Glu
CTC
[ENA]
¢þ
>WENV183307958
OLTU01000584
[OLTU] human gut metagenome; faeces
897
970
+
Glu
CTC
[ENA]
¢þ
>WENV183307967
OLTU01000873
[OLTU] human gut metagenome; faeces
917
842
-
Ala
TGC
[ENA]
¢þ
>WENV183307952
OLTU01000187
[OLTU] human gut metagenome; faeces
966
891
-
Trp
CCA
[ENA]
¢þ
>WENV183307971
OLTU01001411
[OLTU] human gut metagenome; faeces
1031
955
-
Pro
GGG
[ENA]
¢þ
>WENV183307966
OLTU01000863
[OLTU] human gut metagenome; faeces
1063
986
-
Asp
GTC
[ENA]
¢þ
>WENV183307964
OLTU01000834
[OLTU] human gut metagenome; faeces
1250
1323
+
Phe
GAA
[ENA]
¢þ
>WENV183307969
OLTU01001133
[OLTU] human gut metagenome; faeces
1278
1204
-
Met
CAT
[ENA]
¢þ
>WENV183307948
OLTU01000085
[OLTU] human gut metagenome; faeces
1367
1452
+
Tyr
GTA
[ENA]
¢þ
>WENV183307965
OLTU01000834
[OLTU] human gut metagenome; faeces
1420
1494
+
Cys
GCA
[ENA]
¢þ
>WENV183307959
OLTU01000589
[OLTU] human gut metagenome; faeces
1427
1352
-
Ala
CGC
[ENA]
¢þ
>WENV183307960
OLTU01000604
[OLTU] human gut metagenome; faeces
1644
1569
-
Glu
CTC
[ENA]
¢þ
>WENV183307950
OLTU01000157
[OLTU] human gut metagenome; faeces
1968
1893
-
Lys
CTT
[ENA]
¢þ
>WENV183307953
OLTU01000260
[OLTU] human gut metagenome; faeces
2091
2166
+
Lys
TTT
[ENA]
¢þ
>WENV183307951
OLTU01000187
[OLTU] human gut metagenome; faeces
2364
2290
-
Thr
GGT
[ENA]
¢þ
>WENV183307946
OLTU01000074
[OLTU] human gut metagenome; faeces
2952
3026
+
Thr
CGT
[ENA]
¢þ
>WENV183307947
OLTU01000074
[OLTU] human gut metagenome; faeces
3070
3143
+
Lys
CTT
[ENA]
¢þ
>WENV183307944
OLTU01000003
[OLTU] human gut metagenome; faeces
4279
4203
-
Ile
GAT
[ENA]
¢þ
>WENV183307943
OLTU01000003
[OLTU] human gut metagenome; faeces
4379
4304
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK