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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLTX] human gut metagenome; faeces
HIT:
49 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183308133
OLTX01000175
[OLTX] human gut metagenome; faeces
87
161
+
Pro
CGG
[ENA]
¢þ
>WENV183308151
OLTX01000836
[OLTX] human gut metagenome; faeces
97
26
-
Cys
GCA
[ENA]
¢þ
>WENV183308162
OLTX01001686
[OLTX] human gut metagenome; faeces
129
53
-
Glu
CTC
[ENA]
¢þ
>WENV183308115
OLTX01000029
[OLTX] human gut metagenome; faeces
147
222
+
Thr
CGT
[ENA]
¢þ
>WENV183308160
OLTX01001558
[OLTX] human gut metagenome; faeces
165
91
-
Asn
GTT
[ENA]
¢þ
>WENV183308153
OLTX01001151
[OLTX] human gut metagenome; faeces
194
120
-
Val
GAC
[ENA]
¢þ
>WENV183308150
OLTX01000836
[OLTX] human gut metagenome; faeces
200
127
-
Gly
GCC
[ENA]
¢þ
>WENV183308158
OLTX01001499
[OLTX] human gut metagenome; faeces
218
146
-
Thr
TGT
[ENA]
¢þ
>WENV183308161
OLTX01001686
[OLTX] human gut metagenome; faeces
220
147
-
Gln
CTG
[ENA]
¢þ
>WENV183308138
OLTX01000259
[OLTX] human gut metagenome; faeces
252
326
+
Arg
CCG
[ENA]
¢þ
>WENV183308140
OLTX01000353
[OLTX] human gut metagenome; faeces
262
335
+
Gly
TCC
[ENA]
¢þ
>WENV183308149
OLTX01000752
[OLTX] human gut metagenome; faeces
294
367
+
Lys
TTT
[ENA]
¢þ
>WENV183308116
OLTX01000029
[OLTX] human gut metagenome; faeces
315
396
+
Leu
TAG
[ENA]
¢þ
>WENV183308146
OLTX01000454
[OLTX] human gut metagenome; faeces
320
393
+
Asn
GTT
[ENA]
¢þ
>WENV183308152
OLTX01001095
[OLTX] human gut metagenome; faeces
378
303
-
Arg
CCT
[ENA]
¢þ
>WENV183308159
OLTX01001524
[OLTX] human gut metagenome; faeces
390
464
+
Arg
ACG
[ENA]
¢þ
>WENV183308137
OLTX01000214
[OLTX] human gut metagenome; faeces
410
497
+
Ser
GGA
[ENA]
¢þ
>WENV183308147
OLTX01000454
[OLTX] human gut metagenome; faeces
420
493
+
Asn
GTT
[ENA]
¢þ
>WENV183308157
OLTX01001487
[OLTX] human gut metagenome; faeces
434
361
-
Arg
CCT
[ENA]
¢þ
>WENV183308136
OLTX01000211
[OLTX] human gut metagenome; faeces
442
516
+
Lys
CTT
[ENA]
¢þ
>WENV183308155
OLTX01001179
[OLTX] human gut metagenome; faeces
453
528
+
Arg
CCT
[ENA]
¢þ
>WENV183308154
OLTX01001155
[OLTX] human gut metagenome; faeces
455
535
+
Leu
TAA
[ENA]
¢þ
>WENV183308156
OLTX01001295
[OLTX] human gut metagenome; faeces
490
566
+
Ala
CGC
[ENA]
¢þ
>WENV183308130
OLTX01000104
[OLTX] human gut metagenome; faeces
718
790
+
Glu
TTC
[ENA]
¢þ
>WENV183308143
OLTX01000391
[OLTX] human gut metagenome; faeces
759
685
-
Thr
TGT
[ENA]
¢þ
>WENV183308131
OLTX01000104
[OLTX] human gut metagenome; faeces
815
889
+
Asp
GTC
[ENA]
¢þ
>WENV183308139
OLTX01000333
[OLTX] human gut metagenome; faeces
900
826
-
Ile
TAT
[ENA]
¢þ
>WENV183308148
OLTX01000472
[OLTX] human gut metagenome; faeces
913
988
+
Pro
TGG
[ENA]
¢þ
>WENV183308142
OLTX01000391
[OLTX] human gut metagenome; faeces
914
830
-
Leu
CAA
[ENA]
¢þ
>WENV183308144
OLTX01000442
[OLTX] human gut metagenome; faeces
934
1006
+
Val
GAC
[ENA]
¢þ
>WENV183308145
OLTX01000442
[OLTX] human gut metagenome; faeces
1051
1125
+
Val
CAC
[ENA]
¢þ
>WENV183308141
OLTX01000391
[OLTX] human gut metagenome; faeces
1108
1036
-
Trp
CCA
[ENA]
¢þ
>WENV183308120
OLTX01000036
[OLTX] human gut metagenome; faeces
1262
1188
-
fMet
CAT
[ENA]
¢þ
>WENV183308122
OLTX01000054
[OLTX] human gut metagenome; faeces
1418
1344
-
Thr
TGT
[ENA]
¢þ
>WENV183308125
OLTX01000060
[OLTX] human gut metagenome; faeces
1571
1644
+
Glu
CTC
[ENA]
¢þ
>WENV183308126
OLTX01000060
[OLTX] human gut metagenome; faeces
1682
1756
+
Gln
CTG
[ENA]
¢þ
>WENV183308128
OLTX01000082
[OLTX] human gut metagenome; faeces
1688
1763
+
Trp
CCA
[ENA]
¢þ
>WENV183308135
OLTX01000201
[OLTX] human gut metagenome; faeces
1931
1857
-
Met
CAT
[ENA]
¢þ
>WENV183308134
OLTX01000201
[OLTX] human gut metagenome; faeces
2091
2009
-
Tyr
GTA
[ENA]
¢þ
>WENV183308132
OLTX01000152
[OLTX] human gut metagenome; faeces
2125
2199
+
Leu
CAA
[ENA]
¢þ
>WENV183308123
OLTX01000055
[OLTX] human gut metagenome; faeces
2298
2222
-
Arg
TCT
[ENA]
¢þ
>WENV183308127
OLTX01000075
[OLTX] human gut metagenome; faeces
2599
2514
-
Ser
TGA
[ENA]
¢þ
>WENV183308129
OLTX01000102
[OLTX] human gut metagenome; faeces
2638
2724
+
Ser
CGA
[ENA]
¢þ
>WENV183308117
OLTX01000031
[OLTX] human gut metagenome; faeces
3311
3385
+
Ile
GAT
[ENA]
¢þ
>WENV183308118
OLTX01000031
[OLTX] human gut metagenome; faeces
3427
3500
+
Ala
TGC
[ENA]
¢þ
>WENV183308119
OLTX01000031
[OLTX] human gut metagenome; faeces
3501
3574
+
Ala
GGC
[ENA]
¢þ
>WENV183308124
OLTX01000057
[OLTX] human gut metagenome; faeces
3523
3449
-
His
GTG
[ENA]
¢þ
>WENV183308121
OLTX01000038
[OLTX] human gut metagenome; faeces
4266
4355
+
Ser
GCT
[ENA]
¢þ
>WENV183308114
OLTX01000006
[OLTX] human gut metagenome; faeces
8642
8569
-
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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